My complex disease trait mapping, genome mapping, linkage analysis journal watch - year 2004 [ this week | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 ]


General
Linkage & whole genome mapping
Sibpair
Linkage disequilibrium
Quantitative Trait Loci (QTL)
Theoretical development
Software
Database
Genetic map development
 

 Can't find the complex disease trait mapping, genome mapping or linkage analysis article published in 2003 in my site?
Try a Google search!
Google

General

  1. Churchill GA, Airey DC, Allayee H, Angel JM, Attie AD, Beatty J, Beavis WD, Belknap JK, Bennett B, Berrettini W, Bleich A, Bogue M, Broman KW, Buck KJ, Buckler E, Burmeister M, Chesler EJ, Cheverud JM, Clapcote S, Cook MN, Cox RD, Crabbe JC, Crusio WE, Darvasi A, Deschepper CF, Doerge RW, Farber CR, Forejt J, Gaile D, Garlow SJ, Geiger H, Gershenfeld H, Gordon T, Gu J, Gu W, de Haan G, Hayes NL, Heller C, Himmelbauer H, Hitzemann R, Hunter K, Hsu HC, Iraqi FA, Ivandic B, Jacob HJ, Jansen RC, Jepsen KJ, Johnson DK, Johnson TE, Kempermann G, Kendziorski C, Kotb M, Kooy RF, Llamas B, Lammert F, Lassalle JM, Lowenstein PR, Lu L, Lusis A, Manly KF, Marcucio R, Matthews D, Medrano JF, Miller DR, Mittleman G, Mock BA, Mogil JS, Montagutelli X, Morahan G, Morris DG, Mott R, Nadeau JH, Nagase H, Nowakowski RS, O'Hara BF, Osadchuk AV, Page GP, Paigen B, Paigen K, Palmer AA, Pan HJ, Peltonen-Palotie L, Peirce J, Pomp D, Pravenec M, Prows DR, Qi Z, Reeves RH, Roder J, Rosen GD, Schadt EE, Schalkwyk LC, Seltzer Z, Shimomura K, Shou S, Sillanpaa MJ, Siracusa LD, Snoeck HW, Spearow JL, Svenson K, Tarantino LM, Threadgill D, Toth LA, Valdar W, de Villena FP, Warden C, Whatley S, Williams RW, Wiltshire T, Yi N, Zhang D, Zhang M, Zou F; Complex Trait Consortium. The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nat Genet. 2004 Nov;36(11):1133-7. [PubMed]
  2. Evans DM, Cardon LR. Guidelines for Genotyping in Genomewide Linkage Studies: Single-Nucleotide-Polymorphism Maps Versus Microsatellite Maps. Am J Hum Genet. 2004 Aug 13 [Epub ahead of print] [PubMed]
  3. Bamshad M, Wooding S, Salisbury BA, Stephens JC. Deconstructing the relationship between genetics and race. Nat Rev Genet. 2004 Aug;5(8):598-609. [PubMed]
  4. Bjornsson HT, Daniele Fallin M, Feinberg AP. An integrated epigenetic and genetic approach to common human disease. Trends Genet. 2004 Aug;20(8):350-8. [PubMed]
  5. Ma CX. FunMap: functional mapping of complex traits. Bioinformatics 2004 Jul 27; 20: 1808-1811. [PubMed]
  6. Wang NJ, Liu D, Parokonny AS, Schanen NC. High-Resolution Molecular Characterization of 15q11-q13 Rearrangements by Array Comparative Genomic Hybridization (Array CGH) with Detection of Gene Dosage. Am J Hum Genet. 2004 Jun 11 [Epub ahead of print] [PubMed]
  7. Varilo T, Peltonen L. Isolates and their potential use in complex gene mapping efforts. Curr Opin Genet Dev. 2004 Jun;14(3):316-23. [PubMed]
  8. Hoh J, Ott J. Genetic dissection of diseases: design and methods. Curr Opin Genet Dev. 2004 Jun;14(3):229-32. [PubMed]
  9. Singer JB, Hill AE, Burrage LC, Olszens KR, Song J, Justice M, O'Brien WE, Conti DV, Witte JS, Lander ES, Nadeau JH. Genetic dissection of complex traits with chromosome substitution strains of mice. Science. 2004 Apr 16;304(5669):445-8.[PubMed] [Supporting Online Material]
  10. Hao K, Wang X, Niu T, Xu X, Li A, Chang W, Wang L, Li G, Laird N, Xu X. A candidate gene association study on preterm delivery: application of high-throughput genotyping technology and advanced statistical methods. Hum Mol Genet. 2004 Apr 1;13(7):683-91.[PubMed]
  11. Beaumont MA. et al., THE BAYESIAN REVOLUTION IN GENETICS. Nat Rev Genet. 2004 Apr [PubMed]
  12. Andersson L, Georges M. Domestic-animal genomics: deciphering the genetics of complex traits. Nat Rev Genet. 2004 Mar;5(3):202-212. [PubMed]
  13. Funalot B, Varenne O, Mas JL. A call for accurate phenotype definition in the study of complex disorders. Nat Genet. 2004 Jan;36(1):3 [PubMed]
  14. Gulcher JR, Gretarsdottir S, Kong A, Stefansson K. Reply to "A call for accurate phenotype definition in the study of complex disorders". Nat Genet. 2004 Jan;36(1):3-4. [PubMed]

Linkage & whole genome mapping

  1. Freimer N, Sabatti C. The use of pedigree, sib-pair and association studies of common diseases for genetic mapping and epidemiology. Nat Genet. 2004 Oct;36(10):1045-51. [PubMed]
  2. Furman I, Rieder MJ, Da Ponte S, Carrington DP, Nickerson DA, Kruglyak L, Markianos K. Sequence-Based Linkage Analysis. Am J Hum Genet. 2004 Aug 25 [Epub ahead of print] [PubMed]
  3. John S, Shephard N, Liu G, Zeggini E, Cao M, Chen W, Vasavda N, Mills T, Barton A, Hinks A, Eyre S, Jones KW, Ollier W, Silman A, Gibson N, Worthington J, Kennedy GC. Whole-genome scan, in a complex disease, using 11,245 single-nucleotide polymorphisms: comparison with microsatellites. Am J Hum Genet. 2004 Jul;75(1):54-64. [PubMed]
  4. Carlson CS, Eberle MA, Kruglyak L, Nickerson DA. Mapping complex disease loci in whole-genome association studies. Nature. 2004 May 27;429(6990):446-52. [PubMed]

Sibpair

  1. Freimer N, Sabatti C. The use of pedigree, sib-pair and association studies of common diseases for genetic mapping and epidemiology. Nat Genet. 2004 Oct;36(10):1045-51. [PubMed]
  2. Szatkiewicz JP, Feingold E. A Powerful and Robust New Linkage Statistic for Discordant Sibling Pairs. Am J Hum Genet. 2004 Sep 13 [Epub ahead of print] [PubMed]
  3. Smirnov D, Bruzel A, Morley M, Cheung VG. Direct IBD mapping: identical-by-descent mapping without genotyping. Genomics. 2004 Feb; 83(2): 335-45.  [PubMed]

Linkage disequilibrium

  1. Lin S, Chakravarti A, Cutler DJ.  Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies. Nat Genet. 2004 Nov;36(11):1181-8. [PubMed]
  2. Freimer N, Sabatti C. The use of pedigree, sib-pair and association studies of common diseases for genetic mapping and epidemiology. Nat Genet. 2004 Oct;36(10):1045-51. [PubMed]
  3. Tsunoda T, Lathrop GM, Sekine A, Yamada R, Takahashi A, Ohnishi Y, Tanaka T, Nakamura Y. Variation of gene-based SNPs and linkage disequilibrium patterns in the human genome. Hum Mol Genet. 2004 Aug 1;13(15):1623-32. [PubMed]
  4. Nejentsev S, Godfrey L, Snook H, Rance H, Nutland S, Walker NM, Lam AC, Guja C, Ionescu-Tirgoviste C, Undlien DE, Ronningen KS, Tuomilehto-Wolf E, Tuomilehto J, Newport MJ, Clayton DG, Todd JA. Comparative high-resolution analysis of linkage disequilibrium and tag single nucleotide polymorphisms between populations in the vitamin D receptor gene. Hum Mol Genet. 2004 Aug 1;13(15):1633-9. [PubMed]
  5. Moeller S, Koczan D, Serrano-Fernandez P, Zettl UK, Thiesen HJ, Ibrahim SM. Selecting SNPs for association studies based on population frequencies: A novel interactive tool and its application to polygenic diseases. In Silico Biol. 2004 Jul 26;4(3):0035. [Epub ahead of print][PubMed]
  6. Durrant C, Zondervan KT, Cardon LR, Hunt S, Deloukas P, Morris AP. Linkage Disequilibrium Mapping via Cladistic Analysis of Single-Nucleotide Polymorphism Haplotypes. Am J Hum Genet. 2004 Jul;75(1):35-43. [PubMed]
  7. Kamatani N, Sekine A, Kitamoto T, Iida A, Saito S, Kogame A, Inoue E, Kawamoto M, Harigai M, Nakamura Y. Large-Scale Single-Nucleotide Polymorphism (SNP) and Haplotype Analyses, Using Dense SNP Maps, of 199 Drug-Related Genes in 752 Subjects: the Analysis of the Association between Uncommon SNPs within Haplotype Blocks and the Haplotypes Constructed with Haplotype-Tagging SNPs. Am J Hum Genet. 2004 Jun 16 [Epub ahead of print] [PubMed]
  8. Zhao JH. 2LD, GENECOUNTING and HAP: computer programs for linkage disequilibrium analysis. Bioinformatics. 2004 May 22;20(8):1325-6. [PubMed]
  9. Morris AP, Whittaker JC, Balding DJ. Little loss of information due to unknown phase for fine-scale linkage-disequilibrium mapping with single-nucleotide-polymorphism genotype data. Am J Hum Genet. 2004 May;74(5):945-53. [PubMed]
  10. Maniatis N, Collins A, Gibson J, Zhang W, Tapper W, Morton NE. Positional cloning by linkage disequilibrium. Am J Hum Genet. 2004 May;74(5):846-55.  [PubMed]
  11. Ke X, Hunt S, Tapper W, Lawrence R, Stavrides G, Ghori J, Whittaker P, Collins A, Morris AP, Bentley D, Cardon LR, Deloukas P. The impact of SNP density on fine-scale patterns of linkage disequilibrium. Hum Mol Genet. 2004 Mar 15;13(6):577-88. [PubMed]
  12. Gorelick R, Laubichler MD.  Decomposing multilocus linkage disequilibrium. Genetics. 2004 Mar;166(3):1581-3. [PubMed]
  13. Grapes L, Dekkers JC, Rothschild MF, Fernando RL. Comparing linkage disequilibrium-based methods for fine mapping quantitative trait Loci. Genetics. 2004 Mar;166(3):1561-70. [PubMed]
  14. Carlson CS, Eberle MA, Rieder MJ, Yi Q, Kruglyak L, Nickerson DA. Selecting a Maximally Informative Set of Single-Nucleotide Polymorphisms for Association Analyses Using Linkage Disequilibrium. Am J Hum Genet. 2004 Jan;74(1):106-20. [PubMed]

Quantitative Trait Loci (QTL)

  1. Zhao W, Ma C, Cheverud JM, Wu R. A unifying statistical model for QTL mapping of genotype x sex interaction for developmental trajectories. Physiol Genomics. 2004 Oct 4;19(2):218-27. [PubMed]
  2. Wang X, Korstanje R, Higgins D, Paigen B. Haplotype analysis in multiple crosses to identify a QTL gene. Genome Res. 2004 Sep;14(9):1767-72. [PubMed]
  3. Jourjon MF, Jasson S, Marcel J, Ngom B, Mangin B. MCQTL: multi-allelic QTL mapping in multi-cross design. Bioinformatics. 2004 Aug 19;. [Epub ahead of print] [PubMed]
  4. Blangero J. Localization and identification of human quantitative trait loci: King Harvest has surely come. Curr Opin Genet Dev. 2004 Jun;14(3):233-40. [PubMed]
  5. Grapes L, Dekkers JC, Rothschild MF, Fernando RL. Comparing linkage disequilibrium-based methods for fine mapping quantitative trait Loci. Genetics. 2004 Mar;166(3):1561-70. [PubMed]

Theoretical development

  1. Becker T, Knapp M. A Powerful Strategy to Account for Multiple Testing in the Context of Haplotype Analysis. Am J Hum Genet. 2004 Oct;75(4):561-70. [PubMed]
  2. Lu Y, Liu P, Liu Y, Xu F, Deng HW. Quantifying the relationship between gene expressions and trait values in general pedigrees. Genetics. 2004 Sep 15;. [Epub ahead of print][PubMed]
  3. Sawcer SJ, Maranian M, Singlehurst S, Yeo T, Compston A, Daly MJ, De Jager PL, Gabriel S, Hafler DA, Lander ES, Rioux JD, Walsh E, Gregory SG, Schmidt S, Pericak-Vance MA, Barcellos L, Hauser SL, Oksenberg JR, Kenealy SJ, Haines JL. Enhancing linkage analysis of complex disorders: An evaluation of high-density genotyping. Hum Mol Genet. 2004 Sep 1;13(17):1943-1949.  [PubMed]
  4. Yu X, Knott SA, Visscher PM. Theoretical and empirical power of regression and maximum-likelihood methods to map quantitative trait Loci in general pedigrees. Am J Hum Genet. 2004 Jul;75(1):17-26. [PubMed]
  5. Carlson CS, Eberle MA, Kruglyak L, Nickerson DA. Mapping complex disease loci in whole-genome association studies. Nature. 2004 May 27;429(6990):446-52. [PubMed]
  6. Morris AP, Whittaker JC, Balding DJ. Little loss of information due to unknown phase for fine-scale linkage-disequilibrium mapping with single-nucleotide-polymorphism genotype data. Am J Hum Genet. 2004 May;74(5):945-53. [PubMed]
  7. Hoggart CJ, Shriver MD, Kittles RA, Clayton DG, McKeigue PM. Design and analysis of admixture mapping studies. Am J Hum Genet. 2004 May;74(5):965-78. [PubMed]
  8. Patterson N, Hattangadi N, Lane B, Lohmueller KE, Hafler DA, Oksenberg JR, Hauser SL, Smith MW, O'Brien SJ, Altshuler D, Daly MJ, Reich D. Methods for high-density admixture mapping of disease genes. Am J Hum Genet. 2004 May;74(5):979-1000.  [PubMed]
  9. Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, Charcosset A, Joets J. BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics. 2004 Apr 1 [Epub ahead of print] [PubMed]
  10. Nyholt DR. A Simple Correction for Multiple Testing for Single-Nucleotide Polymorphisms in Linkage Disequilibrium with Each Other. Am J Hum Genet. 2004 Apr;74(4):765-9. [PubMed]
  11. Fingerlin TE, Boehnke M, Abecasis GR. Increasing the Power and Efficiency of Disease-Marker Case-Control Association Studies through Use of Allele-Sharing Information.Am J Hum Genet. 2004 Mar;74(3):432-43. [PubMed]
  12. Grapes L, Dekkers JC, Rothschild MF, Fernando RL. Comparing linkage disequilibrium-based methods for fine mapping quantitative trait Loci. Genetics. 2004 Mar;166(3):1561-70. [PubMed]
  13. Kang H, Qin ZS, Niu T, Liu JS. Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms. Am J Hum Genet. 2004 Mar;74(3):495-510. [PubMed
  14. Zondervan KT, Cardon LR. The complex interplay among factors that influence allelic association. Nat Rev Genet. 2004 Feb;5(2):89-100. [PubMed]
  15. Jim K, Parmar K, Singh M, Tavazoie S. A cross-genomic approach for systematic mapping of phenotypic traits to genes. Genome Res. 2004 Jan; 14(1): 109-15. [PubMed][Supplemental Research Data]

Software

  1. Zhao JH. 2LD, GENECOUNTING and HAP: computer programs for linkage disequilibrium analysis. Bioinformatics. 2004 May 22;20(8):1325-6. [PubMed]
  2. Chesler EJ, Lu L, Wang J, Williams RW, Manly KF. WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior. Nat Neurosci. 2004 May;7(5):485-486. [PubMed]

Database

  1. Becker KG, Barnes KC, Bright TJ, Wang SA. The genetic association database. Nat Genet. 2004 May;36(5):431-2. [PubMed]

Genetic map development

  1. Kong X, Murphy K, Raj T, He C, White PS, Matise TC. A Combined Linkage-Physical Map of the Human Genome. Am J Hum Genet. Am J Hum Genet. 2004 Dec;75(6):1143-8. [PubMed]
  2. Nievergelt CM, Smith DW, Kohlenberg JB, Schork NJ. Large-scale integration of human genetic and physical maps. Genome Res. 2004 Jun;14(6):1199-205. [PubMed]
  3. Smith MW, Patterson N, Lautenberger JA, Truelove AL, McDonald GJ, Waliszewska A, Kessing BD, Malasky MJ, Scafe C, Le E, De Jager PL, Mignault AA, Yi Z, De The G, Essex M, Sankale JL, Moore JH, Poku K, Phair JP, Goedert JJ, Vlahov D, Williams SM, Tishkoff SA, Winkler CA, De La Vega FM, Woodage T, Sninsky JJ, Hafler DA, Altshuler D, Gilbert DA, O'Brien SJ, Reich D. A high-density admixture map for disease gene discovery in african americans. Am J Hum Genet. 2004 May;74(5):1001-13. [PubMed]
  4. Petkov PM, Cassell MA, Sargent EE, Donnelly CJ, Robinson P, Crew V, Asquith S, Haar RV, Wiles MV. Development of a SNP genotyping panel for genetic monitoring of the laboratory mouse. Genomics. 2004 May;83(5):902-11. [PubMed]
  5. Wu C, Sun S, Nimmakayala P, Santos FA, Meksem K, Springman R, Ding K, Lightfoot DA, Zhang HB. A BAC- and BIBAC-based physical map of the soybean genome. Genome Res. 2004 Feb;14(2):319-26. [PubMed][Supplemental Research Data]
  6. Riethman H, Ambrosini A, Castaneda C, Finklestein J, Hu XL, Mudunuri U, Paul S, Wei J. Mapping and initial analysis of human subtelomeric sequence assemblies. Genome Res. 2004 Jan;14(1):18-28. [PubMed]
last updated: 6 Dec 2004
home