My microarray journal watch - year 2003 Oct-Dec  [ this week | 2004 Oct-Dec | 2004 Jul-Sep | 2004 Apr-Jun | 2004 Jan-Mar | 2003 Oct-Dec | 2003 Jul-Sep | 2003 Apr-Jun | 2003 Jan-Mar | 2002 Jul-Dec | 2002 Jan-Jun | 2001 Jul-Dec | 2001 Jan-Jun | 2000 | 1999 | 1998 | 1997 | 1996 & before ]

General
Human disease studies
   Disease screening, profiling and classification
   Diagnosis, prognosis and clinical applications
   Animal model studies
   In vitro studies
Basic science studies
   Gene product function
   General physiology
   Development & differentiation
   Neurobiology
   Signal transduction
   Apoptosis
   Human
   Animal
   Plant
   Microbiology
Genome scale studies
   Comparative Genomics
   Network/pathway reconstruction and analysis
Genetic analysis
   ArrayCGH

Pharmacogenomics and pharmacogenetics
Toxicogenomics
Technical development
Other related technical issue; microdissection; linear amplification of RNA (aRNA)
Experimental design, sample size & power
Data analysis
   Oligo design for array manufacturing
   Image analysis
   Normalization
   Pattern recognition, classification & data mining by unsupervised methods
   Pattern recognition, classification & data mining by supervised methods
   Network/pathway reconstruction and analysis
   Statistical significance of analysis
   Software
Database
Tissue microarray
Protein array
Biochip/lab-on-a-chip/micro-Total Analysis System (uTAS)
Cell microarray
Other array platforms
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General

  1. Kaiser J. Intellectual property. Patent sprawl: from genes to gene interpretation. Science. 2003 Dec 12;302(5652):1878.[PubMed]
  2. Gibson G. Microarray Analysis: Genome-scale hypothesis scanning. PLoS Biol. 2003 Oct;1(1):E15. [PubMed]
  3. Ng JH, Ilag LL. Biochips beyond DNA: technologies and applications. Biotechnol Annu Rev. 2003;9:1-149. [PubMed]

Human disease studies

  1. Hauser P, Schwarz C, Mitterbauer C, Regele HM, Muhlbacher F, Mayer G, Perco P, Mayer B, Meyer TW, Oberbauer R. Genome-wide gene-expression patterns of donor kidney biopsies distinguish primary allograft function. Lab Invest. 2003 Dec 29 [Epub ahead of print] [PubMed]
  2. Sanchez-Carbayo M, Cordon-Cardo C. Applications of array technology: identification of molecular targets in bladder cancer. Br J Cancer. 2003 Dec 15;89(12):2172-7. [PubMed]
  3. Qin H, Yamada M, Tian L, Stewart DM, Gulino AV, Nelson DL. Tracking gene expression in primary immunodeficiencies. Curr Opin Allergy Clin Immunol. 2003 Dec;3(6):437-42. [PubMed]
  4. Hayashi Y. Gene expression profiling in childhood acute leukemia: progress and perspectives. Int J Hematol. 2003 Dec; 78(5): 414-20. [PubMed]
  5. Lock CB, Heller RA. Gene microarray analysis of multiple sclerosis lesions. Trends Mol Med. 2003 Dec;9(12):535-41. [PubMed]
  6. New Microarray Detects Antigen-Specific T Cells and Immune Responses. PLoS Biol. 2003 Dec;1(3):E76. [PubMed]
  7. Zeng X. The Making of a Portrait - Bringing it into Focus. Curr Pharm Biotechnol. 2003 Dec;4(6):397-9. [PubMed]
  8. Moir S, Donoghue ET, Pickeral OK, Malaspina A, Planta MA, Chun TW, Krishnan SR, Kottilil S, Birse CE, Leitman SF, Fauci AS. Continuous flow leukapheresis induces expression of stress genes in lymphocytes: impact on microarray analyses. Blood. 2003 Nov 15;102(10):3852-3. [PubMed]
  9. Erle DJ, Yang YH. Asthma investigators begin to reap the fruits of genomics. Genome Biol. 2003;4(11):232. [PubMed]
  10. Waukau J, Jailwala P, Wang Y, Khoo HJ, Ghosh S, Wang X, Hessner MJ. The design of a gene chip for functional immunological studies on a high-quality control platform. Ann N Y Acad Sci. 2003 Nov;1005:284-7. [PubMed]
  11. Albertson DG, Pinkel D. Genomic Microarrays in Human Genetic Disease and Cancer. Hum Mol Genet. 2003 Oct 15;12 Suppl 2:R145-52. [PubMed]
  12. Velden PA, Nieuwpoort FA, Out-Luiting C, Smit NP, Pavel S, Snoo FA, Bergman W, Tensen CP, Frants RR, Willemze R, Gruis NA. IL-17 Genetics of the FAMMM Syndrome. Pigment Cell Res. 2003 Oct;16(5):579. [PubMed]
  13. Marcotte ER, Srivastava LK, Quirion R. cDNA microarray and proteomic approaches in the study of brain diseases: focus on schizophrenia and Alzheimer's disease. Pharmacol Ther. 2003 Oct;100(1):63-74. [PubMed]
  14. Baker M, Gillanders WE, Mikhitarian K, Mitas M, Cole DJ. The molecular detection of micrometastatic breast cancer. Am J Surg. 2003 Oct;186(4):351-8. [PubMed]
  15. Levy-Nissenbaum O, Sagi-Assif O, Raanani P, Avigdor A, Ben-Bassat I, Witz IP. cDNA microarray analysis reveals an overexpression of the dual-specificity MAPK phosphatase PYST2 in acute leukemia. Methods Enzymol. 2003;366:103-13. [PubMed]
  16. Luo J, Isaacs WB, Trent JM, Duggan DJ. Looking beyond morphology: cancer gene expression profiling using DNA microarrays. Cancer Invest. 2003; 21(6): 937-49. [PubMed]

Disease screening, profiling and classification

  1. Tian E, Zhan F, Walker R, Rasmussen E, Ma Y, Barlogie B, Shaughnessy JD Jr. The Role of the Wnt-Signaling Antagonist DKK1 in the Development of Osteolytic Lesions in Multiple Myeloma. N Engl J Med. 2003 Dec 25;349(26):2483-2494. [PubMed]
  2. Hiyama E, Hiyama K, Yamaoka H, Sueda T, Reynolds CP, Yokoyama T. Expression profiling of favorable and unfavorable neuroblastomas. Pediatr Surg Int. 2003 Dec 23 [Epub ahead of print] [PubMed]
  3. Okada T, Iizuka N, Yamada-Okabe H, Mori N, Tamesa T, Takemoto N, Tangoku A, Hamada K, Nakayama H, Miyamoto T, Uchimura S, Hamamoto Y, Oka M. Gene expression profile linked to p53 status in hepatitis C virus-related hepatocellular carcinoma. FEBS Lett. 2003 Dec 18;555(3):583-90.  [PubMed]
  4. Skotheim RI, Kallioniemi A, Bjerkhagen B, Mertens F, Brekke HR, Monni O, Mousses S, Mandahl N, Soeter G, Nesland JM, Smeland S, Kallioniemi OP, Lothe RA. Topoisomerase-II{alpha} Is Upregulated in Malignant Peripheral Nerve Sheath Tumors and Associated With Clinical Outcome. J Clin Oncol. 2003 Dec 15;21(24):4586-4591. [PubMed]
  5. Huh SJ, Paik DJ, Chung HS, Youn J. Regulation of GRB2 and FLICE2 expression by TNF-alpha in rheumatoid synovium. Immunol Lett. 2003 Dec 15;90(2-3):93-6. [PubMed]
  6. Cromer A, Carles A, Millon R, Ganguli G, Chalmel F, Lemaire F, Young J, Dembele D, Thibault C, Muller D, Poch O, Abecassis J, Wasylyk B. Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis. Oncogene. 2003 Dec 15 [Epub ahead of print] [PubMed]
  7. Luo A, Kong J, Hu G, Liew CC, Xiong M, Wang X, Ji J, Wang T, Zhi H, Wu M, Liu Z. Discovery of Ca(2+)-relevant and differentiation-associated genes downregulated in esophageal squamous cell carcinoma using cDNA microarray. Oncogene. 2003 Dec 1 [Epub ahead of print] [PubMed]
  8. Maitra A, Hansel DE, Argani P, Ashfaq R, Rahman A, Naji A, Deng S, Geradts J, Hawthorne L, House MG, Yeo CJ. Global Expression Analysis of Well-Differentiated Pancreatic Endocrine Neoplasms Using Oligonucleotide Microarrays. Clin Cancer Res. 2003 Dec 1;9(16):5988-5995. [PubMed]
  9. Kim B, Bang S, Lee S, Kim S, Jung Y, Lee C, Choi K, Lee SG, Lee K, Lee Y, Kim SS, Yeom YI, Kim YS, Yoo HS, Song K, Lee I. Expression Profiling and Subtype-Specific Expression of Stomach Cancer. Cancer Res. 2003 Dec 1;63(23):8248-8255. [PubMed]
  10. Martinez N, Camacho FI, Algara P, Rodriguez A, Dopazo A, Ruiz-Ballesteros E, Martin P, Martinez-Climent JA, Garcia-Conde J, Menarguez J, Solano F, Mollejo M, Piris MA. The Molecular Signature of Mantle Cell Lymphoma Reveals Multiple Signals Favoring Cell Survival. Cancer Res. 2003 Dec 1;63(23):8226-8232. [PubMed]
  11. Lim EH, Aggarwal A, Agasthian T, Wong PS, Tan C, Sim E, Tan L, Goh PS, Wang SC, Khoo KL, Mukherjee A, Khoo SM, Chua G, Nilsson B, Lee KH, Tan P. Feasibility of using low-volume tissue samples for gene expression profiling of advanced non-small cell lung cancers. Clin Cancer Res. 2003 Dec 1;9(16):5980-7. [PubMed]
  12. Smith MW, Yue ZN, Korth MJ, Do HA, Boix L, Fausto N, Bruix J, Carithers RL Jr, Katze MG. Hepatitis C virus and liver disease: global transcriptional profiling and identification of potential markers. Hepatology. 2003 Dec;38(6):1458-67. [PubMed]
  13. Nomura I, Gao B, Boguniewicz M, Darst MA, Travers JB, Leung DY. Distinct patterns of gene expression in the skin lesions of atopic dermatitis and psoriasis: A gene microarray analysis. J Allergy Clin Immunol. 2003 Dec;112(6):1195-202. [PubMed]
  14. D'ambrosio C, Akin C, Wu Y, Magnusson MK, Metcalfe DD. Gene expression analysis in mastocytosis reveals a highly consistent profile with candidate molecular markers. J Allergy Clin Immunol. 2003 Dec;112(6):1162-70.[PubMed]
  15. Ahn WS, Kim KW, Bae SM, Yoon JH, Lee JM, Namkoong SE, Kim JH, Kim CK, Lee YJ, Kim YW. Targeted cellular process profiling approach for uterine leiomyoma using cDNA microarray, proteomics and gene ontology analysis. Int J Exp Pathol. 2003 Dec;84(6):267-279. [PubMed]
  16. Ernst RK, D'Argenio DA, Ichikawa JK, Bangera MG, Selgrade S, Burns JL, Hiatt P, McCoy K, Brittnacher M, Kas A, Spencer DH, Olson MV, Ramsey BW, Lory S, Miller SI. Genome mosaicism is conserved but not unique in Pseudomonas aeruginosa isolates from the airways of young children with cystic fibrosis. Environ Microbiol. 2003 Dec;5(12):1341-1349. [PubMed]
  17. Okada K, Katagiri T, Tsunoda T, Mizutani Y, Suzuki Y, Kamada M, Fujioka T, Shuin T, Miki T, Nakamura Y. Analysis of gene-expression profiles in testicular seminomas using a genome-wide cDNA microarray. Int J Oncol. 2003 Dec;23(6):1615-35. [PubMed]
  18. Stamey TA, Caldwell MC, Fan Z, Zhang Z, McNeal JE, Nolley R, Chen Z, Mahadevappa M, Warrington JA. Genetic profiling of Gleason grade 4/5 prostate cancer: which is the best prostatic control tissue? J Urol. 2003 Dec;170(6 Pt 1):2263-8. [PubMed]
  19. Linn SC, West RB, Pollack JR, Zhu S, Hernandez-Boussard T, Nielsen TO, Rubin BP, Patel R, Goldblum JR, Siegmund D, Botstein D, Brown PO, Gilks CB, Van De Rijn M. Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans. Am J Pathol. 2003 Dec;163(6):2383-95. [PubMed]
  20. Sanchez-Carbayo M, Saint F, Lozano JJ, Viale A, Cordon-Cardo C. Comparison of Gene Expression Profiles in Laser-Microdissected, Nonembedded, and OCT-Embedded Tumor Samples by Oligonucleotide Microarray Analysis. Clin Chem. 2003 Dec;49(12):2096-100. [PubMed]
  21. Nomura I, Gao B, Boguniewicz M, Darst MA, Travers JB, Leung DY. Distinct patterns of gene expression in the skin lesions of atopic dermatitis and psoriasis: A gene microarray analysis. J Allergy Clin Immunol. 2003 Dec;112(6):1195-202. [PubMed]
  22. Hiyama E, Hiyama K, Nishiyama M, Reynolds CP, Shay JW, Yokoyama T. Differential gene expression profiles between neuroblastomas with high telomerase activity and low telomerase activity. J Pediatr Surg. 2003 Dec;38(12):1730-1734. [PubMed]
  23. Liu LX, Jiang HC, Liu ZH, Zhu AL, Zhang WH, Wu LF, Zhou J, Wang XQ, Wu M. Expression of cell cycle/growth regulator genes in human hepatocellular carcinoma and adjacent normal liver tissues. Oncol Rep. 2003 Nov-Dec;10(6):1771-5. [PubMed]
  24. Lenburg ME, Liou LS, Gerry NP, Frampton GM, Cohen HT, Christman MF. Previously unidentified changes in renal cell carcinoma gene expression identified by parametric analysis of microarray data. BMC Cancer. 2003 Nov 27 [Epub ahead of print][PubMed]
  25. Tajouri L, Mellick AS, Ashton KJ, Tannenberg AE, Nagra RM, Tourtellotte WW, Griffiths LR. Quantitative and qualitative changes in gene expression patterns characterize the activity of plaques in multiple sclerosis. Brain Res Mol Brain Res. 2003 Nov 26;119(2):170-83.  [PubMed]
  26. Dangond F, Hwang D, Camelo S, Pasinelli P, Frosch MP, Stephanopoulos G, Stephanopoulos G, Brown Jr RH, Gullans SR. The molecular signature of late-stage human ALS revealed by expression profiling of post-mortem spinal cord gray matter. Physiol Genomics. 2003 Nov 25 [Epub ahead of print] [PubMed]
  27. Gomez-Ambrosi J, Catalan V, Diez-Caballero A, Martinez-Cruz LA, Gil MJ, Garcia-Foncillas J, Cienfuegos JA, Salvador J, Mato JM, Fruhbeck G. Gene expression profile of omental adipose tissue in human obesity. FASEB J. 2003 Nov 20 [Epub ahead of print] [PubMed]
  28. Erickson RP, Skinner S, Jacquet H, Campion D, Buckley PG, Mantripragada KK, Dumanski JP. Does chromosome 22 have anything to do with sex determination: Further studies on a 46,XX,22q11.2 del male. Am J Med Genet. 2003 Nov 15;123A(1):64-7. [PubMed]
  29. Wong YF, Selvanayagam ZE, Wei N, Porter J, Vittal R, Hu R, Lin Y, Liao J, Shih JW, Cheung TH, Lo KW, Yim SF, Yip SK, Ngong DT, Siu N, Chan LK, Chan CS, Kong T, Kutlina E, McKinnon RD, Denhardt DT, Chin KV, Chung TK. Expression genomics of cervical cancer: molecular classification and prediction of radiotherapy response by DNA microarray. Clin Cancer Res. 2003 Nov 15;9(15):5486-92. [PubMed]
  30. Nasedkina TV, Zharinov VS, Isaeva EA, Mityaeva ON, Yurasov RN, Surzhikov SA, Turigin AY, Rubina AY, Karachunskii AI, Gartenhaus RB, Mirzabekov AD. Clinical screening of gene rearrangements in childhood leukemia by using a multiplex polymerase chain reaction-microarray approach. Clin Cancer Res. 2003 Nov 15;9(15):5620-9. [PubMed]
  31. Banerjee AG, Bhattacharyya I, Lydiatt WM, Vishwanatha JK. Aberrant expression and localization of decorin in human oral dysplasia and squamous cell carcinoma. Cancer Res. 2003 Nov 15;63(22):7769-76. [PubMed]
  32. Biberthaler P, Neth P, Bach B, Mayer V, Mussack T, Mutschler W, Jochum M. Initial RNA expression in human monocytes after multiple injury: a screening pilot study on potentially trauma-sensitive factors by using the microarray-technique. Eur J Med Res. 2003 Nov 12;8(11):473-84. [PubMed]
  33. Kohlmann A, Schoch C, Schnittger S, Dugas M, Hiddemann W, Kern W, Haferlach T. Pediatric acute lymphoblastic leukemia (ALL) gene expression signatures classify an independent cohort of adult ALL patients. Leukemia. 2003 Nov 6 [Epub ahead of print] [PubMed]
  34. Korkola JE, DeVries S, Fridlyand J, Hwang ES, Estep AL, Chen YY, Chew KL, Dairkee SH, Jensen RM, Waldman FM. Differentiation of Lobular versus Ductal Breast Carcinomas by Expression Microarray Analysis. Cancer Res. 2003 Nov 1;63(21):7167-7175. [PubMed]
  35. Guadalupe M, Reay E, Sankaran S, Prindiville T, Flamm J, McNeil A, Dandekar S. Severe CD4(+) T-Cell Depletion in Gut Lymphoid Tissue during Primary Human Immunodeficiency Virus Type 1 Infection and Substantial Delay in Restoration following Highly Active Antiretroviral Therapy. J Virol. 2003 Nov;77(21):11708-17. [PubMed]
  36. Kanamori T, Takakura K, Mandai M, Kariya M, Fukuhara K, Kusakari T, Momma C, Shime H, Yagi H, Konishi M, Suzuki A, Matsumura N, Nanbu K, Fujita J, Fujii S. PEP-19 overexpression in human uterine leiomyoma. Mol Hum Reprod. 2003 Nov;9(11):709-17. [PubMed]
  37. Kim YH, Lee JH, Lim do S, Shim WJ, Ro YM, Park GH, Becker KG, Cho-Chung YS, Kim MK. Gene expression profiling of oxidative stress on atrial fibrillation in humans. Exp Mol Med. 2003 Oct 31;35(5):336-49. [PubMed]
  38. Linder K, Arner P, Flores-Morales A, Tollet-Egnell P, Norstedt G. Differentially expressed genes in visceral or subcutaneous adipose tissue of obese men and women. J Lipid Res. 2003 Oct 16 [Epub ahead of print] [PubMed]
  39. Hawse JR, Hejtmancik JF, Huang Q, Sheets NL, Hosack DA, Lempicki RA, Horwitz J, Kantorow M. Identification and functional clustering of global gene expression differences between human age-related cataract and clear lenses. Mol Vis. 2003 Oct 7;9:515-37. [PubMed]
  40. Takahashi M, Yang XJ, Sugimura J, Backdahl J, Tretiakova M, Qian CN, Gray SG, Knapp R, Anema J, Kahnoski R, Nicol D, Vogelzang NJ, Furge KA, Kanayama H, Kagawa S, Teh BT. Molecular subclassification of kidney tumors and the discovery of new diagnostic markers. Oncogene. 2003 Oct 2;22(43):6810-8. [PubMed]
  41. Luo J, Dunn TA, Ewing CM, Walsh PC, Isaacs WB. Decreased gene expression of steroid 5 alpha-reductase 2 in human prostate cancer: Implications for finasteride therapy of prostate carcinoma. Prostate. 2003 Oct 1;57(2):134-9. [PubMed]
  42. Yan PS, Shi H, Rahmatpanah F, Hsiau TH, Hsiau AH, Leu YW, Liu JC, Huang TH. Differential Distribution of DNA Methylation within the RASSF1A CpG Island in Breast Cancer. Cancer Res. 2003 Oct 1;63(19):6178-6186. [PubMed]
  43. Chung C, Tallerico T, Seeman P. Schizophrenia hippocampus has elevated expression of chondrex glycoprotein gene. Synapse. 2003 Oct;50(1):29-34. [PubMed]
  44. Kakiuchi C, Iwamoto K, Ishiwata M, Bundo M, Kasahara T, Kusumi I, Tsujita T, Okazaki Y, Nanko S, Kunugi H, Sasaki T, Kato T. Impaired feedback regulation of XBP1 as a genetic risk factor for bipolar disorder. Nat Genet. 2003 Oct;35(2):171-5. [PubMed]
  45. Terracciano LM, Glatz K, Mhawech P, Vasei M, Lehmann FS, Vecchione R, Tornillo L. Hepatoid adenocarcinoma with liver metastasis mimicking hepatocellular carcinoma: an immunohistochemical and molecular study of eight cases. Am J Surg Pathol. 2003 Oct;27(10):1302-12. [PubMed]
  46. Oshima Y, Ueda M, Yamashita Y, Choi YL, Ota J, Ueno S, Ohki R, Koinuma K, Wada T, Ozawa K, Fujimura A, Mano H. DNA microarray analysis of hematopoietic stem cell-like fractions from individuals with the M2 subtype of acute myeloid leukemia. Leukemia. 2003 Oct;17(10):1990-7. [PubMed]
  47. Roesch A, Vogt T, Stolz W, Dugas M, Landthaler M, Becker B. Discrimination between gene expression patterns in the invasive margin and the tumour core of malignant melanomas. Melanoma Res. 2003 Oct;13(5):503-509. [PubMed]
  48. Miyahara T, Kikuchi T, Akimoto M, Kurokawa T, Shibuki H, Yoshimura N. Gene microarray analysis of experimental glaucomatous retina from cynomologous monkey. Invest Ophthalmol Vis Sci. 2003 Oct;44(10):4347-56. [PubMed]
  49. Ueda M, Ota J, Yamashita Y, Choi YL, Ohki R, Wada T, Koinuma K, Kano Y, Ozawa K, Mano H. DNA microarray analysis of stage progression mechanism in myelodysplastic syndrome. Br J Haematol. 2003 Oct;123(2):288-96. [PubMed]
  50. Sung JC, Boulware D, Eschrich S, Gonzalez F, Yeatman TJ, Lee H. Genetic heterogeneity of colorectal cancer liver metastases. J Surg Res. 2003 Oct;114(2):251. [PubMed]
  51. Lubec G, Sohn SY. RNA microarray analysis of channels and transporters in normal and fetal Down Syndrome (trisomy 21) brain. J Neural Transm Suppl. 2003;(67):215-24. [PubMed]

Diagnosis, prognosis and clinical applications

  1. Wright PK, Raine C. Molecular heterogeneity in acute renal allograft rejection and DNA microarrays. N Engl J Med. 2003 Dec 4;349(23):2269. [PubMed]
  2. Febbo PG, Sellers WR. Use of expression analysis to predict outcome after radical prostatectomy. J Urol. 2003 Dec;170(6 Pt 2):S11-9; [PubMed]
  3. Striebel HM, Birch-Hirschfeld E, Egerer R, Foldes-Papp Z. Virus diagnostics on microarrays. Curr Pharm Biotechnol. 2003 Dec;4(6):401-15. [PubMed]
  4. Zeng X. The Making of a Portrait - Bringing it into Focus. Curr Pharm Biotechnol. 2003 Dec;4(6):397-9. [PubMed]
  5. Schulte JH, Schramm A, Pressel T, Klein-Hitpass L, Kremens B, Eils J, Havers W, Eggert A. Microarray-analysis: a new approach to study the molecular mechanisms of thermo-chemotherapy. Klin Padiatr. 2003 Nov-Dec;215(6):298-302. [PubMed]
  6. Dudda-Subramanya R, Lucchese G, Kanduc D, Sinha AA. Clinical applications of DNA microarray analysis. J Exp Ther Oncol. 2003 Nov-Dec;3(6):297-304. [PubMed]
  7. Ng YY, Van Kessel B, Lokhorst HM, Baert MR, Van Den Burg CM, Bloem AC, Staal FJ. Gene-expression profiling of CD34+ cells from various hematopoietic stem-cell sources reveals functional differences in stem-cell activity. J Leukoc Biol. 2003 Nov 21 [Epub ahead of print] [PubMed]
  8. Ntzani EE, Ioannidis JP. Predictive ability of DNA microarrays for cancer outcomes and correlates: an empirical assessment. Lancet. 2003 Nov 1;362(9394):1439-44. [PubMed]
  9. Winegarden N. Microarrays in cancer: moving from hype to clinical reality. Lancet. 2003 Nov 1;362(9394):1428. [PubMed]
  10. Ruel M, Bianchi C, Khan TA, Xu S, Liddicoat JR, Voisine P, Araujo E, Lyon H, Kohane IS, Libermann TA, Sellke FW. Gene expression profile after cardiopulmonary bypass and cardioplegic arrest. J Thorac Cardiovasc Surg. 2003 Nov;126(5):1521-1530. [PubMed]
  11. Nevins JR, Huang ES, Dressman H, Pittman J, Huang AT, West M. Towards Integrated Clinico-Genomic Models for Personalized Medicine: Combining Gene Expression Signatures and Clinical Factors in Breast Cancer Outcomes Prediction. Hum Mol Genet. 2003 Oct 15;12 Suppl 2:R153-7. [PubMed]
  12. Baker M, Gillanders WE, Mikhitarian K, Mitas M, Cole DJ. The molecular detection of micrometastatic breast cancer. Am J Surg. 2003 Oct;186(4):351-8. [PubMed]
  13. Randall RL, Wade M, Albritton KH, Coffin CM, Joyner DE. Validation of cDNA microarray analysis to distinguish tumor type ex vivo. Clin Orthop. 2003 Oct;(415):S110-9. [PubMed]
  14. Takahashi M, Sugimura J, Yang X, Vogelzang N, Teh BS, Furge K, Teh BT. Gene expression profiling of renal cell carcinoma and its implications in diagnosis, prognosis, and therapeutics. Adv Cancer Res. 2003;89:157-81. [PubMed]
  15. Carinci F, Pezzetti F, Volinia S, Francioso F, Arcelli D, Marchesini J, Scapoli L, Piattelli A. Analysis of osteoblast-like MG63 cells' response to a rough implant surface by means of DNA microarray. J Oral Implantol. 2003;29(5):215-20. [PubMed]

Animal model studies

  1. Holtzclaw JD, Jack D, Aguayo SM, Eckman JR, Roman J, Hsu LL. Enhanced pulmonary and systemic response to endotoxin in transgenic sickle mice. Am J Respir Crit Care Med. 2003 Dec 18 [Epub ahead of print] [PubMed]
  2. Zingarelli B, Hake PW, O'Connor M, Denenberg A, Wong HR, Kong S, Aronow BJ. Differential regulation of activator protein-1 and heat shock factor-1 in myocardial ischemia and reperfusion injury: role of poly(ADP-ribose) polymerase-1. Am J Physiol Heart Circ Physiol. 2003 Dec 11 [Epub ahead of print] [PubMed]
  3. Suzuki S, Asamoto M, Tsujimura K, Shirai T. Specific differences in gene expression profile revealed by cDNA microarray analysis of glutathione S-transferase placental form (GST-P) immunohistochemically positive rat liver foci and surrounding tissue. Carcinogenesis. 2003 Dec 4 [Epub ahead of print] [PubMed]
  4. Hohlweg U, Hosel M, Dorn A, Webb D, Hilger-Eversheim K, Remus R, Schmitz B, Buettner R, Schramme A, Corzilius L, Niemann A, Doerfler W. Intraperitoneal dissemination of Ad12-induced undifferentiated neuroectodermal hamster tumors: de novo methylation and transcription patterns of integrated viral and of cellular genes. Virus Res. 2003 Dec;98(1):45-56. [PubMed]
  5. Ito E, Honma R, Imai J, Azuma S, Kanno T, Mori S, Yoshie O, Nishio J, Iwasaki H, Yoshida K, Gohda J, Inoue J, Watanabe S, Semba K. A Tetraspanin-Family Protein, T-Cell Acute Lymphoblastic Leukemia-Associated Antigen 1, Is Induced by the Ewing's Sarcoma-Wilms' Tumor 1 Fusion Protein of Desmoplastic Small Round-Cell Tumor. Am J Pathol. 2003 Dec;163(6):2165-72. [PubMed]
  6. Higgins DF, Lappin DW, Kieran NE, Anders HJ, Watson RW, Strutz F, Schlondorff D, Haase VH, Fitzpatrick JM, Godson C, Brady HR. DNA oligonucleotide microarray technology identifies fisp-12 among other potential fibrogenic genes following murine unilateral ureteral obstruction (UUO): Modulation during epithelial-mesenchymal transition. Kidney Int. 2003 Dec;64(6):2079-2091. [PubMed]
  7. Pfaffl MW, Gerstmayer B, Bosio A, Windisch W. Effect of zinc deficiency on the mRNA expression pattern in liver and jejunum of adult rats: monitoring gene expression using cDNA microarrays combined with real-time RT-PCR. J Nutr Biochem. 2003 Dec;14(12):691-702. [PubMed]
  8. Kurokawa Y, Matoba R, Takemasa I, Nakamori S, Tsujie M, Nagano H, Dono K, Umeshita K, Sakon M, Ueno N, Kita H, Oba S, Ishii S, Kato K, Monden M. Molecular features of non-B, non-C hepatocellular carcinoma: a PCR-array gene expression profiling study. J Hepatol. 2003 Dec;39(6):1004-12. [PubMed]
  9. Niculescu T, Weerth S, Soane L, Niculescu F, Rus V, Raine CS, Shin ML, Rus H.  Effects of membrane attack complex of complement on apoptosis in experimental autoimmune encephalomyelitis. Ann N Y Acad Sci. 2003 Dec;1010:530-3. [PubMed]
  10. Rybicki AC, Fabry ME, Does MD, Kaul DK, Nagel RL. Differential gene expression in the kidney of sickle cell transgenic mice: upregulated genes. Blood Cells Mol Dis. 2003 Nov-Dec;31(3):370-80. [PubMed]
  11. Newton SS, Collier EF, Hunsberger J, Adams D, Terwilliger R, Selvanayagam E, Duman RS. Gene profile of electroconvulsive seizures: induction of neurotrophic and angiogenic factors. J Neurosci. 2003 Nov 26;23(34):10841-51. [PubMed]
  12. Coser KR, Chesnes J, Hur J, Ray S, Isselbacher KJ, Shioda T. Global analysis of ligand sensitivity of estrogen inducible and suppressible genes in MCF7/BUS breast cancer cells by DNA microarray. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):13994-9.[PubMed]
  13. Matsui Y, Saiura A, Sugawara Y, Sata M, Naruse K, Yagita H, Kohro T, Mataki C, Izumi A, Yamaguchi T, Minami T, Sakihama T, Ihara S, Aburatani H, Hamakubo T, Kodama T, Makuuchi M. Identification of gene expression profile in tolerizing murine cardiac allograft by costimulatory blockade. Physiol Genomics. 2003 Nov 11;15(3):199-208. [PubMed]
  14. Paoni NF, Feldman MW, Gutierrez LS, Ploplis VA, Castellino FJ. Transcriptional profiling of the transition from normal intestinal epithelia to adenomas and carcinomas in the APCMin/+ mouse. Physiol Genomics. 2003 Nov 11;15(3):228-35. [PubMed]
  15. Nguyen VT, Arredondo J, Chernyavsky AI, Kitajima Y, Pittelkow MR, Grando SA. Pemphigus vulgaris IgG and methylprednisolone exhibit reciprocal effects on keratinocytes. J Biol Chem. 2003 Nov 4 [Epub ahead of print] [PubMed]
  16. Valder CR, Liu JJ, Song YH, Luo ZD. Coupling gene chip analyses and rat genetic variances in identifying potential target genes that may contribute to neuropathic allodynia development. J Neurochem. 2003 Nov;87(3):560-73. [PubMed]
  17. Edil BH, Tuggle DW, Puffinbarger NK, Mantor PC, Palmer And BW, Knutson ZA. The Impact of Intra-abdominal Hypertension on Gene Expression in the Kidney. J Trauma. 2003 Nov;55(5):857-9. [PubMed]
  18. Bataller R, Schwabe RF, Choi YH, Yang L, Paik YH, Lindquist J, Qian T, Schoonhoven R, Hagedorn CH, Lemasters JJ, Brenner DA. NADPH oxidase signal transduces angiotensin II in hepatic stellate cells and is critical in hepatic fibrosis. J Clin Invest. 2003 Nov;112(9):1383-94. [PubMed]
  19. Patel SK, Ma N, Monks TJ, Lau SS. Changes in gene expression during chemical-induced nephrocarcinogenicity in the Eker rat. Mol Carcinog. 2003 Nov;38(3):141-54. [PubMed]
  20. Yoshiya K, Tanaka H, Kasai K, Irisawa T, Shiozaki T, Sugimoto H. Profile of gene expression in the subventricular zone after traumatic brain injury. J Neurotrauma. 2003 Nov;20(11):1147-62. [PubMed]
  21. Gris P, Murphy S, Jacob JE, Atkinson I, Brown A. Differential gene expression profiles in embryonic, adult-injured and adult-uninjured rat spinal cords. Mol Cell Neurosci. 2003 Nov;24(3):555-567. [PubMed]
  22. Blaxall BC, Spang R, Rockman HA, Koch WJ. Differential Myocardial Gene Expression in the Development and Rescue of Murine Heart Failure. Physiol Genomics. 2003 Oct 17; [PubMed][web supplement]
  23. Ferrante RJ, Kubilus JK, Lee J, Ryu H, Beesen A, Zucker B, Smith K, Kowall NW, Ratan RR, Luthi-Carter R, Hersch SM. Histone deacetylase inhibition by sodium butyrate chemotherapy ameliorates the neurodegenerative phenotype in Huntington's disease mice. J Neurosci. 2003 Oct 15;23(28):9418-27. [PubMed]
  24. Mirnics ZK, Mirnics K, Terrano D, Lewis DA, Sisodia SS, Schor NF. DNA microarray profiling of developing PS1-deficient mouse brain reveals complex and coregulated expression changes. Mol Psychiatry. 2003 Oct;8(10):863-78. [PubMed]
  25. Spears R, Oakes R, Moore C, Bellinger LL, Hutchins B. A determination of tumor necrosis factor expression in TMJ inflammation with the use of microarray analysis. J Dent Res. 2003 Oct;82(10):807-13. [PubMed]
  26. Tsutsumi T, Suzuki T, Moriya K, Shintani Y, Fujie H, Miyoshi H, Matsuura Y, Koike K, Miyamura T. Hepatitis C virus core protein activates ERK and p38 MAPK in cooperation with ethanol in transgenic mice. Hepatology. 2003 Oct;38(4):820-8. [PubMed]
  27. Gilbert RW, Costain WJ, Blanchard ME, Mullen KL, Currie RW, Robertson HA. DNA microarray analysis of hippocampal gene expression measured twelve hours after hypoxia-ischemia in the mouse. J Cereb Blood Flow Metab. 2003 Oct;23(10):1195-211. [PubMed]
  28. Shah G, Middleton F, Bruch D, Kittur D. Gene expression profile in laser dissected endothelial cells from vascularised heart transplant subjected to ischemia/reperfusion injury. J Surg Res. 2003 Oct;114(2):278. [PubMed]
  29. Hammamieh R, Bi S, Mani S, Chakraborty N, Mendis C, Das R, Jett M. Genetic variations in peripheral blood mononuclear cells in piglets used as an animal model for staphylococcal enterotoxin exposures. OMICS. 2003 Winter;7(4):401-9. [PubMed]

In vitro studies

  1. Black EJ, Clair T, Delrow J, Neiman P, Gillespie DA. Microarray analysis identifies Autotaxin, a tumour cell motility and angiogenic factor with lysophospholipase D activity, as a specific target of cell transformation by v-Jun. Oncogene. 2003 Dec 22 [Epub ahead of print] [PubMed]
  2. Fukai K, Yokosuka O, Chiba T, Hirasawa Y, Tada M, Imazeki F, Kataoka H, Saisho H. Hepatocyte Growth Factor Activator Inhibitor 2/Placental Bikunin (HAI-2/PB) Gene Is Frequently Hypermethylated in Human Hepatocellular Carcinoma. Cancer Res. 2003 Dec 15;63(24):8674-8679. [PubMed] 
  3. Futaki S, Hayashi Y, Yamashita M, Yagi K, Bono H, Hayashizaki Y, Okazaki Y, Sekiguchi K. Molecular basis of constitutive production of basement membrane components: Gene expression profiles of engelbreth-holm-swarm tumor and F9 embryonal carcinoma cells. J Biol Chem. 2003 Dec 12; [PubMed]
  4. Hu L, Lau SH, Tzang CH, Wen JM, Wang W, Xie D, Huang M, Wang Y, Wu MC, Huang JF, Zeng WF, Sham JS, Yang M, Guan XY. Association of Vimentin overexpression and hepatocellular carcinoma metastasis. Oncogene. 2003 Dec 1 [Epub ahead of print] [PubMed]
  5. Ballestar E, Paz MF, Valle L, Wei S, Fraga MF, Espada J, Cigudosa JC, Huang TH, Esteller M. Methyl-CpG binding proteins identify novel sites of epigenetic inactivation in human cancer. EMBO J. 2003 Dec 1;22(23):6335-6345. [PubMed]
  6. Stuart RO, Bush KT, Nigam SK. Changes in gene expression patterns in the ureteric bud and metanephric mesenchyme in models of kidney development. Kidney Int. 2003 Dec;64(6):1997-2008. [PubMed]
  7. Kim CH, Kim do K, Choi SJ, Choi KH, Song KS, Chi J, Koo JS, Hwang SY, Yoon JH, Seong JK. Proteomic and transcriptomic analysis of interleukin-1ss treated lung carcinoma cell line. Proteomics. 2003 Dec;3(12):2454-71. [PubMed]
  8. Rasschaert J, Liu D, Kutlu B, Cardozo AK, Kruhoffer M, ORntoft TF, Eizirik DL. Global profiling of double stranded RNA- and IFN-gamma-induced genes in rat pancreatic beta cells. Diabetologia. 2003 Dec;46(12):1641-57. [PubMed]
  9. Mori M, Benotmane MA, Verheyde J, Van Hummelen P, Hooghe-Peters EL, Desaintes C. Gene expression induced by X-ray irradiation in human blood cell lines. Ann N Y Acad Sci. 2003 Dec;1010:339-41. [PubMed]
  10. Kitadai Y, Sasaki A, Ito M, Tanaka S, Oue N, Yasui W, Aihara M, Imagawa K, Haruma K, Chayama K. Helicobacter pylori infection influences expression of genes related to angiogenesis and invasion in human gastric carcinoma cells. Biochem Biophys Res Commun. 2003 Nov 28;311(4):809-14. [PubMed]
  11. Wang JP, Rought SE, Corbeil J, Guiney DG. Gene expression profiling detects patterns of human macrophage responses following Mycobacterium tuberculosis infection. FEMS Immunol Med Microbiol. 2003 Nov 28;39(2):163-72. [PubMed]
  12. Schwamborn J, Lindecke A, Elvers M, Horejschi V, Kerick M, Rafigh M, Pfeiffer J, Pruellage M, Kaltschmidt B, Kaltschmidt C. Microarray analysis of tumor necrosis factor a induced gene expression in U373 human glioblastoma cells. BMC Genomics. 2003 Nov 25 [Epub ahead of print] [PubMed]
  13. Kammanadiminti SJ, Mann BJ, Dutil L, Chadee K. Regulation of Toll-like receptor-2 expression by the Gal-lectin of Entamoeba histolytica. FASEB J. 2003 Nov 20 [Epub ahead of print] [PubMed]
  14. Fromigue O, Louis K, Dayem M, Milanini J, Pages G, Tartare-Deckert S, Ponzio G, Hofman P, Barbry P, Auberger P, Mari B. Gene expression profiling of normal human pulmonary fibroblasts following coculture with non-small-cell lung cancer cells reveals alterations related to matrix degradation, angiogenesis, cell growth and survival. Oncogene. 2003 Nov 20;22(52):8487-97. [PubMed]
  15. Zuidervaart W, Van Der Velden PA, Hurks MH, Van Nieuwpoort FA, Out-Luiting CJ, Singh AD, Frants RR, Jager MJ, Gruis NA. Gene expression profiling identifies tumour markers potentially playing a role in uveal melanoma development. Br J Cancer. 2003 Nov 17;89(10):1914-9. [PubMed]
  16. Banerjee AG, Bhattacharyya I, Lydiatt WM, Vishwanatha JK. Aberrant expression and localization of decorin in human oral dysplasia and squamous cell carcinoma. Cancer Res. 2003 Nov 15;63(22):7769-76. [PubMed]
  17. Gan L, Ye S, Chu A, Anton KE, Yi S, Vincent VA, Von Schack D, Chin D, Murray J, Lohr S, Patthy L, Gonzalez-Zulueta M, Nikolich K, Urfer R. Identification of cathepsin B as a mediator of neuronal death induced by abeta-activated microglial cells using a functional genomics approach. J Biol Chem. 2003 Nov 10 [Epub ahead of print] [PubMed]
  18. Warke RV, Xhaja K, Martin KJ, Fournier MF, Shaw SK, Brizuela N, De Bosch N, Lapointe D, Ennis FA, Rothman AL, Bosch I. Dengue Virus Induces Novel Changes in Gene Expression of Human Umbilical Vein Endothelial Cells. J Virol. 2003 Nov 1;77(21):11822-11832. [PubMed]
  19. Guadalupe M, Reay E, Sankaran S, Prindiville T, Flamm J, McNeil A, Dandekar S. Severe CD4(+) T-Cell Depletion in Gut Lymphoid Tissue during Primary Human Immunodeficiency Virus Type 1 Infection and Substantial Delay in Restoration following Highly Active Antiretroviral Therapy. J Virol. 2003 Nov;77(21):11708-17. [PubMed]
  20. Ulger C, Toruner GA, Alkan M, Mohammed M, Damani S, Kang J, Galante A, Aviv H, Soteropoulos P, Tolias PP, Schwalb MN, Dermody JJ. Comprehensive genome-wide comparison of DNA and RNA level scan using microarray technology for identification of candidate cancer-related genes in the HL-60 cell line. Cancer Genet Cytogenet. 2003 Nov;147(1):28-35. [PubMed]
  21. Kutlu B, Cardozo AK, Darville MI, Kruhoffer M, Magnusson N, Orntoft T, Eizirik DL. Discovery of gene networks regulating cytokine-induced dysfunction and apoptosis in insulin-producing INS-1 cells. Diabetes. 2003 Nov;52(11):2701-19. [PubMed]
  22. Weinstein JN, Pommier Y. Transcriptomic analysis of the NCI-60 cancer cell lines. C R Biol. 2003 Oct-Nov;326(10-11):909-20. [PubMed]
  23. Kim JR, Lee SR, Chung HJ, Kim S, Baek SH, Kim JH, Kim YS. Identification of amyloid beta-peptide responsive genes by cDNA microarray technology: involvement of RTP801 in amyloid beta-peptide toxicity. Exp Mol Med. 2003 Oct 31;35(5):403-11. [PubMed]
  24. Bertrand FE, Spengeman JD, Shah N, LeBien TW. B-cell development in the presence of the MLL/AF4 oncoprotein proceeds in the absence of HOX A7 and HOX A9 expression. Leukemia. 2003 Oct 16 [Epub ahead of print][PubMed]
  25. Sato M, Girard L, Sekine I, Sunaga N, Ramirez RD, Kamibayashi C, Minna JD. Increased expression and no mutation of the Flap endonuclease (FEN1) gene in human lung cancer. Oncogene. 2003 Oct 16;22(46):7243-6. [PubMed]
  26. Galindo CL, Sha J, Ribardo DA, Fadl AA, Pillai L, Chopra AK. Identification of Aeromonas hydrophila cytotoxic enterotoxin-induced genes in macrophages using microarrays. J Biol Chem. 2003 Oct 10;278(41):40198-212. [PubMed]
  27. Ohnami S, Aoki K, Yoshida K, Ohnami S, Hatanaka K, Suzuki K, Sasaki H, Yoshida T. Expression profiles of pancreatic cancer cell lines infected with antisense K-ras-expressing adenoviral vector. Biochem Biophys Res Commun. 2003 Oct 3;309(4):798-803. [PubMed]
  28. Radhakrishnan S, Otte J, Enam S, Del Valle L, Khalili K, Gordon J. JC Virus-Induced Changes in Cellular Gene Expression in Primary Human Astrocytes. J Virol. 2003 Oct;77(19):10638-44. [PubMed]
  29. Moriya T, Seki N, Shimada K, Kato M, Yakushiji T, Nimura Y, Uzawa K, Takiguchi M, Tanzawa H. In-house cDNA microarray analysis of gene expression profiles involved in SCC cell lines. Int J Mol Med. 2003 Oct;12(4):429-35. [PubMed]
  30. Frasor J, Danes JM, Komm B, Chang KC, Richard Lyttle C, Katzenellenbogen BS. Profiling of Estrogen Up- and Down-Regulated Gene Expression in Human Breast Cancer Cells: Insights into Gene Networks and Pathways Underlying Estrogenic Control of Proliferation and Cell Phenotype. Endocrinology. Endocrinology. 2003 Oct;144(10):4562-74.[PubMed]
  31. Zhao H, Granberg F, Elfineh L, Pettersson U, Svensson C. Strategic attack on host cell gene expression during adenovirus infection. J Virol. 2003 Oct;77(20):11006-15. [PubMed]
  32. Mitchell R, Chiang CY, Berry C, Bushman F. Global analysis of cellular transcription following infection with an hiv-based vector. Mol Ther. 2003 Oct;8(4):674-87. [PubMed]
  33. Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu J, DeRisi JL. The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum. PLoS Biol. 2003 Oct;1(1):E5. [PubMed]
  34. Xu J, Moatamed F, Caldwell JS, Walker JR, Kraiem Z, Taki K, Brent GA, Hershman JM. Enhanced expression of nicotinamide N-methyltransferase in human papillary thyroid carcinoma cells. J Clin Endocrinol Metab. 2003 Oct;88(10):4990-6. [PubMed]
  35. Nakano T, Tani M, Ishibashi Y, Kimura K, Park YB, Imaizumi N, Tsuda H, Aoyagi K, Sasaki H, Ohwada S, Yokota J. Biological properties and gene expression associated with metastatic potential of human osteosarcoma. Clin Exp Metastasis. 2003;20(7):665-74. [PubMed]
  36. Moschella F, Catanzaro RP, Bisikirska B, Sawczuk IS, Papadapoulos KP, Ferrante AW Jr, McKiernan JM, Hesdorffer CS, Harris PE, Maffei A. Shifting gene expression profiles during ex vivo culture of renal tumor cells: implications for cancer immunotherapy. Oncol Res. 2003;14(3):133-45. [PubMed]

Basic science studies

  1. Abraham NG, Scapagnini G, Kappas A. Human heme oxygenase: Cell cycle-dependent expression and DNA microarray identification of multiple gene responses after transduction of endothelial cells. J Cell Biochem. 2003 Dec 15;90(6):1098-111. [PubMed]
  2. Oh MK, Scoles DR, Haipek C, Strand AD, Gutmann DH, Olson JM, Pulst SM. Genetic heterogeneity of stably transfected cell lines revealed by expression profiling with oligonucleotide microarrays. J Cell Biochem. 2003 Dec 1;90(5):1068-78.  [PubMed]
  3. Preiss T, Baron-Benhamou J, Ansorge W, Hentze MW. Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock. Nat Struct Biol. 2003 Dec;10(12):1039-1047. [PubMed]
  4. Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, Stahl E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES, Mann M. Integrated Analysis of Protein Composition, Tissue Diversity, and Gene Regulation in Mouse Mitochondria. Cell. 2003 Nov 26;115(5):629-40.  [PubMed]
  5. Sperger JM, Chen X, Draper JS, Antosiewicz JE, Chon CH, Jones SB, Brooks JD, Andrews PW, Brown PO, Thomson JA. Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors. Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13350-5. [PubMed]
  6. Genter MB, Van Veldhoven PP, Jegga A, Sakthivel B, Kong S, Stanley K, Witte DP, Ebert CL, Aronow BJ. Microarray-based discovery of highly-expressed olfactory mucosal genes: Potential roles in the various functions of the olfactory system. Physiol Genomics. 2003 Oct 21 [Epub ahead of print] [PubMed]
  7. Whitfield CW, Cziko AM, Robinson GE. Gene expression profiles in the brain predict behavior in individual honey bees. Science. 2003 Oct 10;302(5643):296-9. [PubMed][web supplement]
  8. Urbanczyk-Wochniak E, Luedemann A, Kopka J, Selbig J, Roessner-Tunali U, Willmitzer L, Fernie AR. Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep. 2003 Oct;4(10):989-93. [PubMed]
  9. Duffield GE. DNA microarray analyses of circadian timing: the genomic basis of biological time. J Neuroendocrinol. 2003 Oct;15(10):991-1002. [PubMed]

Gene product function

  1. Kian Tee M, Rogatsky I, Tzagarakis-Foster C, Cvoro A, An J, Christy RJ, Yamamoto KR, Leitman DC. Estradiol and Selective Estrogen Receptor Modulators Differentially Regulate Target Genes with Estrogen Receptors {alpha} and {beta} Mol Biol Cell. 2003 Dec 29 [Epub ahead of print] [PubMed]
  2. Li Q, Cheon YP, Kannan A, Shankar S, Bagchi IC, Bagchi MK. A novel pathway involving progesterone receptor, 12/15-lipoxygenase-derived Eicosanoids, and peroxisome proliferator-activated receptor gamma regulates implantation in mice. J Biol Chem. 2003 Dec 19 [Epub ahead of print] [PubMed]
  3. Frederiksen KS, Wulff EM, Sauerberg P, Mogensen JP, Jeppesen L, Fleckner J. Prediction of PPAR-alpha ligand-mediated physiological changes using gene expression profiles. J Lipid Res. 2003 Dec 16 [Epub ahead of print] [PubMed]
  4. Peng Y, Kang Q, Cheng H, Li X, Sun MH, Jiang W, Luu HH, Park JY, Haydon RC, He TC. Transcriptional characterization of bone morphogenetic proteins (BMPs)-mediated osteogenic signaling. J Cell Biochem. 2003 Dec 15;90(6):1149-65. [PubMed]
  5. Hoshino J, Aruga J, Ishiguro A, Mikoshiba K. Dorz1, a novel gene expressed in differentiating cerebellar granule neurons, is down-regulated in Zic1-deficient mouse. Brain Res Mol Brain Res. 2003 Dec 12;120(1):57-64. [PubMed]
  6. Balkovetz DF, Gerrard Jr ER, Li S, Johnson D, Lee J, Tobias JW, Rogers KK, Snyder RW, Lipschutz JH. Gene Expression Alterations During HGF-Induced Dedifferentiation of a Renal Tubular Epithelial Cell Line (MDCK) Using a Novel Canine DNA Microarray. Am J Physiol Renal Physiol. 2003 Dec 9 [Epub ahead of print] [PubMed]
  7. Herceg Z, Li H, Cuenin C, Shukla V, Radolf M, Steinlein P, Wang ZQ. Genome-wide analysis of gene expression regulated by the HAT cofactor Trrap in conditional knockout cells. Nucleic Acids Res. 2003 Dec 1;31(23):7011-23. [PubMed]
  8. Paglinawan R, Malipiero U, Schlapbach R, Frei K, Reith W, Fontana A. TGFbeta directs gene expression of activated microglia to an anti-inflammatory phenotype strongly focusing on chemokine genes and cell migratory genes. Glia. 2003 Dec;44(3):219-31. [PubMed]
  9. McConnell MJ, Chevallier N, Berkofsky-Fessler W, Giltnane JM, Malani RB, Staudt LM, Licht JD. Growth Suppression by Acute Promyelocytic Leukemia-Associated Protein PLZF Is Mediated by Repression of c-myc Expression. Mol Cell Biol. 2003 Dec;23(24):9375-88. [PubMed]
  10. Hu CJ, Wang LY, Chodosh LA, Keith B, Simon MC. Differential Roles of Hypoxia-Inducible Factor 1alpha (HIF-1alpha) and HIF-2alpha in Hypoxic Gene Regulation. Mol Cell Biol. 2003 Dec;23(24):9361-74. [PubMed]
  11. Kloeker S, Major MB, Calderwood DA, Ginsberg MH, Jones DA, Beckerle MC. The Kindler syndrome protein is regulated by TGFbeta and involved in integrin-mediated adhesion. J Biol Chem. 2003 Nov 21 [Epub ahead of print] [PubMed]
  12. Iacobas DA, Urban-Maldonado M, Iacobas S, Scemes E, Spray DC. Array analysis of gene expression in connexin-43 null astrocytes. Physiol Genomics. 2003 Nov 11;15(3):177-90. [PubMed][web supplement]
  13. Dorsam ST, Ferrell CM, Dorsam GP, Derynck MK, Vijapurkar U, Khodabakhsh D, Pau B, Bernstein H, Haqq CM, Largman C, Lawrence HJ. The transcriptome of the leukemogenic homeoprotein HOXA9 in human hematopoietic cells. Blood. 2003 Nov 6 [Epub ahead of print] [PubMed]
  14. Xu ZX, Zhao RX, Ding T, Tran TT, Zhang W, Pandolfi PP, Chang KS. PML4 induces apoptosis by inhibition of survivin expression. J Biol Chem. 2003 Nov 3 [Epub ahead of print] [PubMed]
  15. McClung CA, Nestler EJ. Regulation of gene expression and cocaine reward by CREB and DeltaFosB. Nat Neurosci. 2003 Nov;6(11):1208-15. [PubMed]
  16. Zhang A, Wassarman KM, Rosenow C, Tjaden BC, Storz G, Gottesman S. Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol. 2003 Nov;50(4):1111-1124. [PubMed]
  17. Li T, Chen YH, Liu TJ, Jia J, Hampson S, Shan YX, Kibler D, Wang PH. Using DNA Microarray to Identify Sp1 as a Transcriptional Regulatory Element of Insulin-Like Growth Factor 1 in Cardiac Muscle Cells. Circ Res. 2003 Oct 30 [Epub ahead of print] [PubMed]
  18. Tomaru Y, Kondo S, Suzuki M, Hayashizaki Y. A comprehensive search for HNF-3alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis. Biochem Biophys Res Commun. 2003 Oct 17;310(2):667-74. [PubMed]
  19. Goffard JC, Jin L, Mircescu H, Van Hummelen P, Ledent C, Emile Dumont J, Corvilain B. Gene Expression Profile in thyroid of Transgenic Mice over-expressing the Adenosine Receptor 2a. Mol Endocrinol. 2003 Oct 16 [Epub ahead of print] [PubMed]
  20. Jassim OW, Fink JL, Cagan RL. Dmp53 protects the Drosophila retina during a developmentally regulated DNA damage response. EMBO J. 2003 Oct 15;22(20):5622-32. [PubMed]
  21. Horton JD, Shah NA, Warrington JA, Anderson NN, Park SW, Brown MS, Goldstein JL. Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12027-32. [PubMed]
  22. Iourgenko V, Zhang W, Mickanin C, Daly I, Jiang C, Hexham JM, Orth AP, Miraglia L, Meltzer J, Garza D, Chirn GW, McWhinnie E, Cohen D, Skelton J, Terry R, Yu Y, Bodian D, Buxton FP, Zhu J, Song C, Labow MA. Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12147-52. [PubMed][pdf][web supplement]
  23. Chanda SK, White S, Orth AP, Reisdorph R, Miraglia L, Thomas RS, DeJesus P, Mason DE, Huang Q, Vega R, Yu DH, Nelson CG, Smith BM, Terry R, Linford AS, Yu Y, Chirn GW, Song C, Labow MA, Cohen D, King FJ, Peters EC, Schultz PG, Vogt PK, Hogenesch JB, Caldwell JS. Genome-scale functional profiling of the mammalian AP-1 signaling pathway. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12153-8. [PubMed][pdf][web supplement]
  24. Li Y, Altman S. A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs. Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13213-8. [PubMed]
  25. Russo G, Claudio PP, Fu Y, Stiegler P, Yu Z, Macaluso M, Giordano A. pRB2/p130 target genes in non-small lung cancer cells identified by microarray analysis. Oncogene. 2003 Oct 9;22(44):6959-69. [PubMed]
  26. Chen J, Newton SS, Zeng L, Adams DH, Dow AL, Madsen TM, Nestler EJ, Duman RS. Downregulation of the CCAAT-Enhancer Binding Protein beta in DeltaFosB Transgenic Mice and by Electroconvulsive Seizures. Neuropsychopharmacology. 2003 Oct 8 [Epub ahead of print] [PubMed]
  27. Wu K, Yang Y, Wang C, Davoli MA, D'Amico M, Li A, Cveklova K, Kozmik Z, Lisanti MP, Russell RG, Cvekl A, Pestell RG. DACH1 inhibits TGF-beta signaling through binding Smad4. J Biol Chem. 2003 Oct 2 [Epub ahead of print] [PubMed]
  28. Bystrom J, Wynn TA, Domachowske JB, Rosenberg HF. Gene microarray analysis reveals interleukin-5-dependent transcriptional targets in mouse bone marrow. Blood. 2003 Oct 2 [Epub ahead of print] [PubMed]  
  29. Fu M, Zhu X, Zhang J, Liang J, Lin Y, Zhao L, Ehrengruber MU, Chen YE. Egr-1 target genes in human endothelial cells identified by microarray analysis. Gene. 2003 Oct 2;315:33-41. [PubMed]
  30. Leu YW, Rahmatpanah F, Shi H, Wei SH, Liu JC, Yan PS, Huang TH. Double RNA Interference of DNMT3b and DNMT1 Enhances DNA Demethylation and Gene Reactivation. Cancer Res. 2003 Oct 1;63(19):6110-6115. [PubMed]
  31. Ognjanovic S, Tashima LS, Bryant-Greenwood GD. The effects of pre-B-cell colony-enhancing factor on the human fetal membranes by microarray analysis. Am J Obstet Gynecol. 2003 Oct;189(4):1187-95. [PubMed]
  32. Giles ED, Singh G. Role of insulin-like growth factor binding proteins (IGFBPs) in breast cancer proliferation and metastasis. Clin Exp Metastasis. 2003;20(6):481-7.[PubMed]

General physiology

  1. Ahluwalia A, Clodfelter KH, Waxman DJ. Sexual Dimorphism of Rat Liver Gene Expression: Regulatory Role of Growth Hormone Revealed by DNA Microarray Analysis. Mol Endocrinol. 2003 Dec 18 [Epub ahead of print] [PubMed]
  2. Bortoli S, Renault V, Eveno E, Auffray C, Butler-Browne G, Pietu G. Gene expression profiling of human satellite cells during muscular aging using cDNA arrays. Gene. 2003 Dec 4;321:145-54. [PubMed]
  3. Watanabe H, Suzuki A, Kobayashi M, Lubahn DB, Handa H, Iguchi T. Similarities and differences in uterine gene expression patterns caused by treatment with physiological and non-physiological estrogens. J Mol Endocrinol. 2003 Dec;31(3):487-497. [PubMed]
  4. Lin KH, Lee HY, Shih CH, Yen CC, Chen SL, Yang RC, Wang CS. Plasma protein regulation by thyroid hormone. J Endocrinol. 2003 Dec;179(3):367-77. [PubMed]
  5. Crow MK, Kirou KA, Wohlgemuth J. Microarray analysis of interferon-regulated genes in SLE. Autoimmunity. 2003 Dec;36(8):481-90. [PubMed]
  6. Ida H, Boylan SA, Weigel AL, Hjelmeland LM. Age-related changes in the transcriptional profile of mouse RPE/choroid. Physiol Genomics. 2003 Nov 11;15(3):258-62. [PubMed]
  7. Wang DY, Fulthorpe R, Liss SN, Edwards EA. Identification of Estrogen Responsive Genes by cDNA Microarray and Characterization of a Novel Early Estrogen-Induced Gene: EEIG1. Mol Endocrinol. 2003 Nov 6 [Epub ahead of print] [PubMed]
  8. Sadate-Ngatchou PI, Pouchnik DJ, Griswold MD. Identification of Testosterone Regulated Genes in Testes of Hypogonadal Mice Using Oligonucleotide Microarray. Mol Endocrinol. 2003 Nov 6 [Epub ahead of print] [PubMed]
  9. Abe T, Oue N, Yasui W, Ryoji M. Rapid and preferential induction of ATF3 transcription in response to low doses of UVA light. Biochem Biophys Res Commun. 2003 Oct 31;310(4):1168-74. [PubMed]
  10. Ring RH, Valo Z, Gao C, Barish ME, Singer-Sam J. The Cdkn1a gene (p21(Waf1/Cip1)) is an inflammatory response gene in the mouse central nervous system. Neurosci Lett. 2003 Oct 23;350(2):73-6. [PubMed]
  11. Dobson Jr JG, Fray J, Leonard JL, Pratt RE. MOLECULAR MECHANISMS OF REDUCED {beta}-ADRENERGIC SIGNALING IN THE AGED HEART AS REVEALED BY GENOMIC PROFILING. Physiol Genomics. 2003 Oct 17; [PubMed][web supplement]
  12. Fertuck KC, Eckel JE, Gennings C, Zacharewski TR. Identification of temporal patterns of gene expression in the uteri of immature, ovariectomized mice following exposure to ethynylestradiol. Physiol Genomics. 2003 Oct 17; [PubMed][web supplement]
  13. Weitzel JM, Hamann S, Jauk M, Lacey M, Filbry A, Radtke C, Iwen KA, Kutz S, Harneit A, Lizardi PM, Seitz HJ. Hepatic gene expression patterns in thyroid hormone-treated hypothyroid rats. J Mol Endocrinol. 2003 Oct;31(2):291-303. [PubMed]
  14. Seiler P, Aichele P, Bandermann S, Hauser AE, Lu B, Gerard NP, Gerard C, Ehlers S, Mollenkopf HJ, Kaufmann SH. Early granuloma formation after aerosol Mycobacterium tuberculosis infection is regulated by neutrophils via CXCR3-signaling chemokines. Eur J Immunol. 2003 Oct;33(10):2676-86.  [PubMed]
  15. Bugert P, Dugrillon A, Gunaydin A, Eichler H, Kluter H. Messenger RNA profiling of human platelets by microarray hybridization. Thromb Haemost. 2003 Oct;90(4):738-48. [PubMed]
  16. Vengellur A, Woods BG, Ryan HE, Johnson RS, LaPres JJ. Gene expression profiling of the hypoxia signaling pathway in hypoxia-inducible factor 1alpha null mouse embryonic fibroblasts. Gene Expr. 2003;11(3-4):181-97. [PubMed]
  17. Ohura N, Yamamoto K, Ichioka S, Sokabe T, Nakatsuka H, Baba A, Shibata M, Nakatsuka T, Harii K, Wada Y, Kohro T, Kodama T, Ando J. Global analysis of shear stress-responsive genes in vascular endothelial cells. J Atheroscler Thromb. 2003; 10(5): 304-13. [PubMed]

Development & differentiation

  1. Araki H, Katayama N, Yamashita Y, Mano H, Fujieda A, Usui E, Mitani H, Ohishi K, Nishii K, Masuya M, Minami N, Nobori T, Shiku H. Reprogramming of human post-mitotic neutrophils into macrophages by growth factors. Blood. 2003 Dec 30 [Epub ahead of print] [PubMed]
  2. Tomczak KK, Marinescu VD, Ramoni MF, Sanoudou D, Montanaro F, Han M, Kunkel LM, Kohane IS, Beggs AH. Expression profiling and identification of novel genes involved in myogenic differentiation. FASEB J. 2003 Dec 19 [Epub ahead of print] [PubMed]
  3. Easterday MC, Dougherty JD, Jackson RL, Ou J, Nakano I, Paucar AA, Roobini B, Dianati M, Irvin DK, Weissman IL, Terskikh AV, Geschwind DH, Kornblum HI. Neural progenitor genes. Germinal zone expression and analysis of genetic overlap in stem cell populations. Dev Biol. 2003 Dec 15;264(2):309-22. [PubMed]
  4. Balkovetz DF, Gerrard Jr ER, Li S, Johnson D, Lee J, Tobias JW, Rogers KK, Snyder RW, Lipschutz JH. Gene Expression Alterations During HGF-Induced Dedifferentiation of a Renal Tubular Epithelial Cell Line (MDCK) Using a Novel Canine DNA Microarray. Am J Physiol Renal Physiol. 2003 Dec 9 [Epub ahead of print] [PubMed]
  5. Schmid M, Uhlenhaut NH, Godard F, Demar M, Bressan R, Weigel D, Lohmann JU. Dissection of floral induction pathways using global expression analysis. Development. 2003 Dec;130(24):6001-12. [PubMed][web supplement]
  6. Li L, Akashi K. Unraveling the molecular components and genetic blueprints of stem cells. Biotechniques. 2003 Dec;35(6):1233-9. [PubMed]
  7. Pochampally RR, Smith JR, Ylostalo J, Prockop DJ. Serum deprivation of human marrow stromal cells (hMSCs) selects for a sub-population of early progenitor cells with enhanced expression of Oct-4 and other embryonic genes. Blood. 2003 Nov 26 [Epub ahead of print] [PubMed]
  8. Jones MR, Ravid K. Vascular smooth muscle polyploidization as a biomarker for aging and its impact on differential gene expression. J Biol Chem. 2003 Nov 22 [Epub ahead of print] [PubMed]
  9. Sperger JM, Chen X, Draper JS, Antosiewicz JE, Chon CH, Jones SB, Brooks JD, Andrews PW, Brown PO, Thomson JA. Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors. Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13350-5. [PubMed]
  10. Clerch LB, Baras AS, Massaro GD, Hoffman EP, Massaro D. DNA Microarray Analysis of Neonatal Mouse Lung Connects Regulation of KDR with Dexamethasone-Induced Inhibition of Alveolar Formation. Am J Physiol Lung Cell Mol Physiol. 2003 Nov 7 [Epub ahead of print] [PubMed]
  11. Salim A, Nacamuli RP, Giaccia AJ, Longaker MT. Changes in oxygen tension modulate osteoblast gene expression and long-term differentiation. J Surg Res. 2003 Oct;114(2):309. [PubMed]

Neurobiology

  1. Redmond DE, Zhao JL, Randall JD, Eklund AC, Eusebi LO, Roth RH, Gullans SR, Jensen RV. Spatiotemporal patterns of gene expression during fetal monkey brain development. Brain Res Dev Brain Res. 2003 Dec 19;146(1-2):99-106. [PubMed]
  2. Genter MB, Van Veldhoven PP, Jegga AG, Sakthivel B, Kong S, Stanley K, Witte DP, Ebert CL, Aronow BJ. Microarray-based discovery of highly expressed olfactory mucosal genes: potential roles in the various functions of the olfactory system. Physiol Genomics. 2003 Dec 16;16(1):67-81.  [PubMed]
  3. Kaiser S, Nisenbaum LK. Evaluation of common gene expression patterns in the rat nervous system. Physiol Genomics. 2003 Dec 16;16(1):1-7. [PubMed]
  4. Matsumoto I, Emori Y, Nakamura S, Shimizu K, Arai S, Abe K. DNA microarray cluster analysis reveals tissue similarity and potential neuron-specific genes expressed in cranial sensory ganglia. J Neurosci Res. 2003 Dec 15;74(6):818-28. [PubMed]
  5. Zirlinger M. Selection and validation of microarray candidate genes from subregions and subnuclei of the brain. Methods. 2003 Dec;31(4):290-300. [PubMed]
  6. Mayfield RD, Liu J, Randall PK, Lewohl JM, Dodd PR, Harris RA. Methods for the identification of differentially expressed genes in human post-mortem brain. Methods. 2003 Dec;31(4):301-5. [PubMed]
  7. D'Agata V, Cavallaro S. Hippocampal gene expression profiles in passive avoidance conditioning. Eur J Neurosci. 2003 Nov;18(10):2835-41. [PubMed]
  8. Arnett HA, Wang Y, Matsushima GK, Suzuki K, Ting JP. Functional genomic analysis of remyelination reveals importance of inflammation in oligodendrocyte regeneration. J Neurosci. 2003 Oct 29;23(30):9824-32. [PubMed]
  9. Vawter MP, Evans S, Choudary P, Tomita H, Meador-Woodruff J, Molnar M, Li J, Lopez JF, Myers R, Cox D, Watson SJ, Akil H, Jones EG, Bunney WE. Gender-Specific Gene Expression in Post-Mortem Human Brain: Localization to Sex Chromosomes. Neuropsychopharmacology. 2003 Oct 29 [PubMed]
  10. Whitfield CW, Cziko AM, Robinson GE. Gene expression profiles in the brain predict behavior in individual honey bees. Science. 2003 Oct 10;302(5643):296-9. [PubMed]
  11. Verheijen MH, Chrast R, Burrola P, Lemke G. Local regulation of fat metabolism in peripheral nerves. Genes Dev. 2003 Oct 1;17(19):2450-64. [PubMed]
  12. Fukuhara C, Dirden JC, Tosini G. Analysis of gene expression following norepinephrine stimulation in the rat pineal gland using DNA microarray technique. J Pineal Res. 2003 Oct;35(3):196-203. [PubMed]
  13. Nacamuli RP, Fong KD, Song HM, Fang TD, Salim A, Shi Y, Longaker MT. Microarray analysis of regional dura mater and identification of a transcription factor regulating epithelial to mesenchymal cell transitions. J Surg Res. 2003 Oct;114(2):308. [PubMed]
  14. Henry GL, Zito K, Dubnau J. Chipping away at brain function: mining for insights with microarrays. Curr Opin Neurobiol. 2003 Oct;13(5):570-6. [PubMed]

Signal transduction

  1. Reinoso-Martin C, Schuller C, Schuetzer-Muehlbauer M, Kuchler K. The Yeast Protein Kinase C Cell Integrity Pathway Mediates Tolerance to the Antifungal Drug Caspofungin through Activation of Slt2p Mitogen-Activated Protein Kinase Signaling. Eukaryot Cell. 2003 Dec;2(6):1200-1210. [PubMed]
  2. Lora JM, Al-Garawi A, Pickard MD, Price KS, Bagga S, Sicoli J, Hodge MR, Gutierrez-Ramos JC, Briskin MJ, Boyce JA. FcepsilonRI-dependent gene expression in human mast cells is differentially controlled by T helper type 2 cytokines. J Allergy Clin Immunol. 2003 Dec;112(6):1119-26. [PubMed]
  3. Lin KH, Lee HY, Shih CH, Yen CC, Chen SL, Yang RC, Wang CS. Plasma protein regulation by thyroid hormone. J Endocrinol. 2003 Dec;179(3):367-77. [PubMed]
  4. Wang DY, Fulthorpe R, Liss SN, Edwards EA. Identification of Estrogen Responsive Genes by cDNA Microarray and Characterization of a Novel Early Estrogen-Induced Gene: EEIG1. Mol Endocrinol. 2003 Nov 6 [Epub ahead of print] [PubMed]
  5. Sadate-Ngatchou PI, Pouchnik DJ, Griswold MD. Identification of Testosterone Regulated Genes in Testes of Hypogonadal Mice Using Oligonucleotide Microarray. Mol Endocrinol. 2003 Nov 6 [Epub ahead of print] [PubMed]
  6. Ruddy MJ, Wong GC, Liu XK, Yamamoto H, Kasayama S, Kirkwood KL, Gaffen SL. Functional cooperation between interleukin-17 and TNFalpha is mediated by C/EBP family members. J Biol Chem. 2003 Nov 4 [Epub ahead of print] [PubMed]
  7. Young AP, Nagarajan R, Longmore GD. Mechanisms of transcriptional regulation by Rb-E2F segregate by biological pathway. Oncogene. 2003 Oct 16;22(46):7209-17. [PubMed]
  8. Chanda SK, White S, Orth AP, Reisdorph R, Miraglia L, Thomas RS, DeJesus P, Mason DE, Huang Q, Vega R, Yu DH, Nelson CG, Smith BM, Terry R, Linford AS, Yu Y, Chirn GW, Song C, Labow MA, Cohen D, King FJ, Peters EC, Schultz PG, Vogt PK, Hogenesch JB, Caldwell JS. Genome-scale functional profiling of the mammalian AP-1 signaling pathway. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12153-8. [PubMed][pdf][web supplement]
  9. Tierney EP, Tulac S, Huang ST, Giudice LC. ACTIVATION OF THE PROTEIN KINASE A PATHWAY IN HUMAN ENDOMETRIAL STROMAL CELLS REVEALS SEQUENTIAL CATEGORICAL GENE REGULATION. Physiol Genomics. 2003 Oct 7 [Epub ahead of print] [PubMed]
  10. Burns KH, Owens GE, Ogbonna SC, Nilson JH, Matzuk MM. Expression profiling analyses of gonadotropin responses and tumor development in the absence of inhibins. Endocrinology. 2003 Oct;144(10):4492-507. [PubMed]
  11. Weitzel JM, Hamann S, Jauk M, Lacey M, Filbry A, Radtke C, Iwen KA, Kutz S, Harneit A, Lizardi PM, Seitz HJ. Hepatic gene expression patterns in thyroid hormone-treated hypothyroid rats. J Mol Endocrinol. 2003 Oct;31(2):291-303. [PubMed]

Apoptosis

  1. Rajpal A, Cho YA, Yelent B, Koza-Taylor PH, Li D, Chen E, Whang M, Kang C, Turi TG, Winoto A. Transcriptional activation of known and novel apoptotic pathways by Nur77 orphan steroid receptor. EMBO J. 2003 Dec 15;22(24):6526-6536. [PubMed]
  2. Kutlu B, Cardozo AK, Darville MI, Kruhoffer M, Magnusson N, Orntoft T, Eizirik DL. Discovery of gene networks regulating cytokine-induced dysfunction and apoptosis in insulin-producing INS-1 cells. Diabetes. 2003 Nov;52(11):2701-19. [PubMed]
  3. Zhang Y, Berger SA. Increased calcium influx and ribosomal content correlate with resistance to endoplasmic reticulum stress-induced cell death in mutant leukemia cell lines. J Biol Chem. 2003 Dec 1 [Epub ahead of print] [PubMed]
  4. Xu ZX, Zhao RX, Ding T, Tran TT, Zhang W, Pandolfi PP, Chang KS. PML4 induces apoptosis by inhibition of survivin expression. J Biol Chem. 2003 Nov 3 [Epub ahead of print] [PubMed]
  5. Eizirik DL, Kutlu B, Rasschaert J, Darville M, Cardozo AK. Use of microarray analysis to unveil transcription factor and gene networks contributing to Beta cell dysfunction and apoptosis. Ann N Y Acad Sci. 2003 Nov;1005:55-74. [PubMed]

Human

  1. Abraham NG, Scapagnini G, Kappas A. Human heme oxygenase: Cell cycle-dependent expression and DNA microarray identification of multiple gene responses after transduction of endothelial cells. J Cell Biochem. 2003 Dec 15;90(6):1098-111. [PubMed]
  2. Higgins JP, Wang L, Kambham N, Montgomery K, Mason V, Vogelmann SU, Lemley KV, Brown PO, Brooks JD, Van De Rijn M. Gene Expression In the Normal Adult Human Kidney Assessed By Complementary DNA Microarray. Mol Biol Cell. 2003 Dec 2 [Epub ahead of print][PubMed]
  3. Chowers I, Liu D, Farkas RH, Gunatilaka TL, Hackam AS, Bernstein S, Campochiaro PA, Parmigiani G, Zack DJ. Gene Expression Variation in the Adult Human Retina. Hum Mol Genet. 2003 Nov 15;12(22):2881-93.  [PubMed]
  4. Rehman KS, Yin S, Mayhew BA, Word RA, Rainey WE. Human myometrial adaptation to pregnancy: cDNA microarray gene expression profiling of myometrium from non-pregnant and pregnant women. Mol Hum Reprod. 2003 Nov;9(11):681-700. [PubMed]
  5. Koopman LA, Kopcow HD, Rybalov B, Boyson JE, Orange JS, Schatz F, Masch R, Lockwood CJ, Schachter AD, Park PJ, Strominger JL. Human Decidual Natural Killer Cells Are a Unique NK Cell Subset with Immunomodulatory Potential. J Exp Med. 2003 Oct 20;198(8):1201-1212. [PubMed]
  6. Bugert P, Dugrillon A, Gunaydin A, Eichler H, Kluter H. Messenger RNA profiling of human platelets by microarray hybridization. Thromb Haemost. 2003 Oct;90(4):738-48. [PubMed]

Animal

  1. Ahluwalia A, Clodfelter KH, Waxman DJ. Sexual Dimorphism of Rat Liver Gene Expression: Regulatory Role of Growth Hormone Revealed by DNA Microarray Analysis. Mol Endocrinol. 2003 Dec 18 [Epub ahead of print] [PubMed]
  2. Kaiser S, Nisenbaum LK. Evaluation of common gene expression patterns in the rat nervous system. Physiol Genomics. 2003 Dec 16;16(1):1-7. [PubMed]
  3. Suchyta SP, Sipkovsky S, Halgren RG, Kruska R, Elftman M, Weber-Nielsen M, Vandehaar MJ, Xiao L, Tempelman RJ, Coussens PM. Bovine mammary gene expression profiling using a cDNA microarray enhanced for mammary-specific transcripts. Physiol Genomics. 2003 Dec 16;16(1):8-18. [PubMed]
  4. Nobis W, Ren X, Suchyta SP, Suchyta TR, Zanella AJ, Coussens PM. Development of a porcine brain cDNA library, EST database, and microarray resource. Physiol Genomics. 2003 Dec 16;16(1):153-9. [PubMed]
  5. Moran NA, Plague GR, Sandstrom JP, Wilcox JL. A genomic perspective on nutrient provisioning by bacterial symbionts of insects. Proc Natl Acad Sci U S A. 2003 Nov 25;100 Suppl 2:14543-8. [PubMed]
  6. van Hemert S, Ebbelaar BH, Smits MA, Rebel JM. Generation of EST and microarray resources for functional genomic studies on chicken intestinal health. Anim Biotechnol. 2003 Nov;14(2):133-43. [PubMed]
  7. Neal SJ, Gibson ML, So AK, Westwood JT. Construction of a cDNA-based microarray for Drosophila melanogaster: a comparison of gene transcription profiles from SL2 and Kc167 cells. Genome. 2003 Oct;46(5):879-92. [PubMed]
  8. Suchyta SP, Sipkovsky S, Kruska R, Jeffers A, McNulty A, Coussens MJ, Tempelman RJ, Halgren RG, Saama PM, Bauman DE, Boisclair YR, Burton JL, Collier RJ, DePeters EJ, Ferris TA, Lucy MC, McGuire MA, Medrano JF, Overton TR, Smith TP, Smith GW, Sonstegard TS, Spain JN, Spiers DE, Yao J, Coussens PM. Development and Testing of a High-Density cDNA Microarray Resource for Cattle. Physiol Genomics. 2003 Oct 17;15(2):158-64. [PubMed]
  9. Hsia N, Cornwall GA. DNA Microarray Analysis of Region-Specific Gene Expression in the Mouse Epididymis. Biol Reprod. 2003 Oct 15 [Epub ahead of print] [PubMed]
  10. Nobis W, Ren X, Suchyta SP, Suchyta TR, Zanella AJ, Coussens PM. Microarray-based discovery of highly expressed olfactory mucosal genes: potential roles in the various functions of the olfactory system. Physiol Genomics. 2003 Dec 16;16(1):67-81.  [PubMed]
  11. Suchyta SP, Sipkovsky S, Halgren RG, Kruska R, Elftman M, Weber-Nielson M, Vandehaar MJ, Xiao L, Tempelman RJ, Coussens PM. Bovine Mammary Gene Expression Profiling Using A cDNA Microarray Enhanced For Mammary Specific Transcripts. Physiol Genomics. 2003 Oct 14 [Epub ahead of print] [PubMed]
  12. Whitfield CW, Cziko AM, Robinson GE. Gene expression profiles in the brain predict behavior in individual honey bees. Science. 2003 Oct 10;302(5643):296-9. [PubMed][web supplement]
  13. Azumi K, Takahashi H, Miki Y, Fujie M, Usami T, Ishikawa H, Kitayama A, Satou Y, Ueno N, Satoh N. Construction of a cDNA Microarray Derived from the Ascidian Ciona intestinalis. Zoolog Sci. 2003 Oct;20(10):1223-9. [PubMed]
  14. Liu HC, He Z, Rosenwaks Z. Mouse ovarian tissue cryopreservation has only a minor effect on in vitro follicular maturation and gene expression. J Assist Reprod Genet. 2003 Oct;20(10):421-31. [PubMed]

Plant

  1. Zhu-Salzman K, Salzman RA, Ahn JE, Koiwa H. Transcriptional Regulation of Sorghum Defense Determinants against a Phloem-Feeding Aphid. Plant Physiol. 2003 Dec 30 [Epub ahead of print] [PubMed]
  2. Seki M, Satou M, Sakurai T, Akiyama K, Iida K, Ishida J, Nakajima M, Enju A, Narusaka M, Fujita M, Oono Y, Kamei A, Yamaguchi-Shinozaki K, Shinozaki K. RIKEN Arabidopsis full-length (RAFL) cDNA and its applications for expression profiling under abiotic stress conditions. J Exp Bot. 2003 Dec 12 [Epub ahead of print] [PubMed]
  3. Birnbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN. A gene expression map of the Arabidopsis root. Science. 2003 Dec 12;302(5652):1956-60. [PubMed]
  4. Moire L, Rezzonico E, Goepfert S, Poirier Y. Impact of Unusual Fatty Acid Synthesis on FutileCycling through {beta}-Oxidation and on Gene Expression in Transgenic Plants. Plant Physiol. 2003 Dec 11 [Epub ahead of print] [PubMed]
  5. Schmid M, Uhlenhaut NH, Godard F, Demar M, Bressan R, Weigel D, Lohmann JU. Dissection of floral induction pathways using global expression analysis. Development. 2003 Dec;130(24):6001-12. [PubMed][web supplement]
  6. Watkinson JI, Sioson AA, Vasquez-Robinet C, Shukla M, Kumar D, Ellis M, Heath LS, Ramakrishnan N, Chevone B, Watson LT, Van Zyl L, Egertsdotter U, Sederoff RR, Grene R. Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine. Plant Physiol. 2003 Dec;133(4):1702-16. [PubMed]
  7. Hudson ME, Quail PH. Identification of promoter motifs involved in the network of phytochrome a-regulated gene expression by combined analysis of genomic sequence and microarray data. Plant Physiol. 2003 Dec;133(4):1605-16. [PubMed]
  8. Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Monitoring Expression Profiles of Rice Genes under Cold, Drought, and High-Salinity Stresses and AbscisicAcid Application Using cDNA Microarray and RNAGel-Blot Analyses. Plant Physiol. 2003 Nov 26 [Epub ahead of print] [PubMed]
  9. Jiao Y, Yang H, Ma L, Sun N, Yu H, Liu T, Gao Y, Gu H, Chen Z, Wada M, Gerstein M, Zhao H, Qu LJ, Deng XW. A Genome-Wide Analysis of Bl