My microarray journal watch - year 2003 Jul-Sep  [ this week | 2004 Oct-Dec | 2004 Jul-Sep | 2004 Apr-Jun | 2004 Jan-Mar | 2003 Oct-Dec | 2003 Jul-Sep | 2003 Apr-Jun | 2003 Jan-Mar | 2002 Jul-Dec | 2002 Jan-Jun | 2001 Jul-Dec | 2001 Jan-Jun | 2000 | 1999 | 1998 | 1997 | 1996 & before ]

General
Human disease studies
   Disease screening, profiling and classification
   Diagnosis, prognosis and clinical applications
   Animal model studies
   In vitro studies
Basic science studies
   Gene product function
   General physiology
   Development & differentiation
   Neurobiology
   Signal transduction
   Apoptosis
   Human
   Animal
   Plant
   Microbiology
Genome scale studies
   Comparative Genomics
   Network/pathway reconstruction and analysis
Genetic analysis
   ArrayCGH

Pharmacogenomics and pharmacogenetics
Toxicogenomics
Technical development
Other related technical issue; microdissection; linear amplification of RNA (aRNA)
Experimental design, sample size & power
Data analysis
   Oligo design for array manufacturing
   Image analysis
   Normalization
   Pattern recognition, classification & data mining by unsupervised methods
   Pattern recognition, classification & data mining by supervised methods
   Network/pathway reconstruction and analysis
   Statistical significance of analysis
   Software
Database
Tissue microarray
Protein array
Biochip/lab-on-a-chip/micro-Total Analysis System (uTAS)
Cell microarrays
Other array platforms
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General

  1. Rouse R, Hardiman G. Microarray technology - an intellectual property retrospective. Pharmacogenomics. 2003 Sep;4(5):623-32. [PubMed]
  2. Kling J. Roche's microarray tests US FDA's diagnostic policy. Nat Biotechnol. 2003 Sep;21(9):959-60. [PubMed]
  3. Dennis C. Companies vie to put all your genes on a chip. Nature. 2003 Aug 7;424(6949):605. [PubMed]
  4. Forster T, Roy D, Ghazal P. Experiments using microarray technology: limitations and standard operating procedures. J Endocrinol. 2003 Aug;178(2):195-204. [PubMed]
  5. Howbrook DN, van der Valk AM, O'Shaughnessy MC, Sarker DK, Baker SC, Lloyd AW. Developments in microarray technologies. Drug Discov Today. 2003 Jul 15;8(14):642-51. [PubMed]
  6. Hackett JL, Lesko LJ. Microarray data-the US FDA, industry and academia. Nat Biotechnol. 2003 Jul;21(7):742-743. [PubMed]

Human disease studies

  1. Russo G, Zegar C, Giordano A. Advantages and limitations of microarray technology in human cancer. Oncogene. 2003 Sep 29;22(42):6497-507. [PubMed]
  2. Dyrskjot L. Classification of bladder cancer by microarray expression profiling: towards a general clinical use of microarrays in cancer diagnostics. Expert Rev Mol Diagn. 2003 Sep;3(5):635-47. [PubMed]
  3. Baldi A, Santini D, Uca Ade L, Paggi MG. cDNA array technology in melanoma: An overview. J Cell Physiol. 2003 Aug;196(2):219-23. [PubMed]
  4. Catherino WH, Segars JH. Microarray analysis in fibroids: which gene list is the correct list? Fertil Steril. 2003 Aug;80(2):293-4. [PubMed]
  5. Susztak K, Sharma K, Schiffer M, McCue P, Ciccone E, Bottinger EP. Genomic strategies for diabetic nephropathy. J Am Soc Nephrol. 2003 Aug;14 Suppl 3:S271-8. [PubMed]
  6. Lehrmann E, Hyde TM, Vawter MP, Becker KG, Kleinman JE, Freed WJ. The use of microarrays to characterize neuropsychiatric disorders: postmortem studies of substance abuse and schizophrenia. Curr Mol Med. 2003 Aug;3(5):437-46. [PubMed]
  7. Hayden PS, El-Meanawy A, Schelling JR, Sedor JR. DNA expression analysis: serial analysis of gene expression, microarrays and kidney disease. Curr Opin Nephrol Hypertens. 2003 Jul;12(4):407-14. [PubMed]
  8. Giordano TJ. Gene expression profiling of endocrine tumors using DNA microarrays: progress and promise. Endocr Pathol. 2003 Summer;14(2):107-16. [PubMed]

Disease screening, profiling and classification

  1. Singhal S, Amin KM, Kruklitis R, Marshall MB, Kucharczuk JC, DeLong P, Litzky LA, Kaiser LR, Albelda SM. Differentially Expressed Apoptotic Genes in Early Stage Lung Adenocarcinoma Predicted by Expression Profiling. Cancer Biol Ther. 2003 Sep-Oct;2(5):566-571. [PubMed]
  2. Laytragoon-Lewin N, Chen F, Castro J, Avila-Carino J, Lewin F. Cytokines and Epstein Barr virus (EBV) genes expression in blood chronic lymphocytic leukaemia (CLL) cells and their immortalised CLL cell lines. Anticancer Res. 2003 Sep-Oct;23(5A):4017-22. [PubMed]
  3. Nagata M, Fujita H, Ida H, Hoshina H, Inoue T, Seki Y, Ohnishi M, Ohyama T, Shingaki S, Kaji M, Saku T, Takagi R. Identification of potential biomarkers of lymph node metastasis in oral squamous cell carcinoma by cDNA microarray analysis. Int J Cancer. 2003 Sep 20;106(5):683-9. [PubMed]
  4. Ohshima K, Karube K, Hamasaki M, Suefuji H, Tutiya T, Yamaguchi T, Suzumiya J, Kikuchi M. Imbalances of chemokines, chemokine receptors and cytokines in Hodgkin lymphoma: Classical Hodgkin lymphoma vs. Hodgkin-like ATLL. Int J Cancer. 2003 Sep 20;106(5):706-712. [PubMed]
  5. Nomura I, Goleva E, Howell MD, Hamid QA, Ong PY, Hall CF, Darst MA, Gao B, Boguniewicz M, Travers JB, Leung DY. Cytokine milieu of atopic dermatitis, as compared to psoriasis, skin prevents induction of innate immune response genes. J Immunol. 2003 Sep 15;171(6):3262-9. [PubMed]
  6. Moreno-Bueno G, Sanchez-Estevez C, Cassia R, Rodriguez-Perales S, Diaz-Uriarte R, Dominguez O, Hardisson D, Andujar M, Prat J, Matias-Guiu X, Cigudosa JC, Palacios J. Differential Gene Expression Profile in Endometrioid and Nonendometrioid Endometrial Carcinoma: STK15 Is Frequently Overexpressed and Amplified in Nonendometrioid Carcinomas. Cancer Res. 2003 Sep 15;63(18):5697-702. [PubMed]
  7. Waters AP. Parasitology. Guilty until proven otherwise. Science. 2003 Sep 12;301(5639):1487-8. [PubMed]
  8. Bleharski JR, Li H, Meinken C, Graeber TG, Ochoa MT, Yamamura M, Burdick A, Sarno EN, Wagner M, Rollinghoff M, Rea TH, Colonna M, Stenger S, Bloom BR, Eisenberg D, Modlin RL. Use of genetic profiling in leprosy to discriminate clinical forms of the disease. Science. 2003 Sep 12;301(5639):1527-30. [PubMed]
  9. Munshi NC, Hideshima T, Carrasco D, Shammas M, Auclair D, Davies F, Mitsiades N, Mitsiades C, Kim RS, Li C, Rajkumar SV, Fonseca R, Bergsagel L, Chauhan D, Anderson KC. Identification of genes modulated in multiple myeloma using genetically identical twin samples. Blood. 2003 Sep 11 [Epub ahead of print] [PubMed]
  10. Van Der Velden PA, Zuidervaart W, Hurks MH, Pavey S, Ksander BR, Krijgsman E, Frants RR, Tensen CP, Willemze R, Jager MJ, Gruis NA. Expression profiling reveals that methylation of TIMP3 is involved in uveal melanoma development. Int J Cancer. 2003 Sep 10;106(4):472-9. [PubMed]
  11. Stankovic T, Hubank M, Cronin D, Stewart GS, Fletcher D, Bignell CR, Alvi AJ, Austen B, Weston VJ, Fegan C, Byrd PJ, Moss PA, Taylor AM. Microarray analysis reveals that TP53 and ATM mutant B-CLLs share a defect in activation of pro-apoptotic responses following DNA damage but are distinguished by major differences in activation of pro-survival responses. Blood. 2003 Sep 4 [Epub ahead of print] [PubMed]
  12. Gimino VJ, Lande JD, Berryman TR, King RA, Hertz MI. Gene Expression Profiling of Bronchoalveolar Lavage Cells in Acute Lung Rejection. Am J Respir Crit Care Med. 2003 Sep 4 [Epub ahead of print] [PubMed]
  13. Jenner RG, Maillard K, Cattini N, Weiss RA, Boshoff C, Wooster R, Kellam P. Kaposi's sarcoma-associated herpesvirus-infected primary effusion lymphoma has a plasma cell gene expression profile. Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10399-404. [PubMed][pdf][web supplement]
  14. Sotiriou C, Neo SY, McShane LM, Korn EL, Long PM, Jazaeri A, Martiat P, Fox SB, Harris AL, Liu ET. Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10393-8. [PubMed][pdf]
  15. Zhi H, Zhang J, Hu G, Lu J, Wang X, Zhou C, Wu M, Liu Z. The deregulation of arachidonic acid metabolism-related genes in human esophageal squamous cell carcinoma. Int J Cancer. 2003 Sep 1;106(3):327-33. [PubMed]
  16. Skubitz KM, Skubitz AP. Differential gene expression in leiomyosarcoma. Cancer. 2003 Sep 1;98(5):1029-38. [PubMed]
  17. Zent CS, Zhan F, Schichman SA, Bumm KH, Lin P, Chen JB, Shaughnessy JD. The distinct gene expression profiles of chronic lymphocytic leukemia and multiple myeloma suggest different anti-apoptotic mechanisms but predict only some differences in phenotype. Leuk Res. 2003 Sep;27(9):765-74. [PubMed]
  18. Kern W, Kohlmann A, Wuchter C, Schnittger S, Schoch C, Mergenthaler S, Ratei R, Ludwig WD, Hiddemann W, Haferlach T. Correlation of protein expression and gene expression in acute leukemia. Cytometry. 2003 Sep;55B(1):29-36. [PubMed]
  19. Zhang B, Nie X, Xiao B, Xiang J, Shen S, Gong J, Zhou M, Zhu S, Zhou J, Qian J, Lu H, He X, Li X, Hu G, Li G. Identification of tissue-specific genes in nasopharyngeal epithelial tissue and differentially expressed genes in nasopharyngeal carcinoma by suppression subtractive hybridization and cDNA microarray. Genes Chromosomes Cancer. 2003 Sep;38(1):80-90. [PubMed]
  20. Sasaki H, Ide N, Sendo F, Takeda Y, Adachi M, Fukai I, Fujii Y. Glycosylphosphatidyl inositol-anchored protein (GPI-80) gene expression is correlated with human thymoma stage. Cancer Sci. 2003 Sep;94(9):809-13. [PubMed]
  21. Park PC, Taylor MD, Mainprize TG, Becker LE, Ho M, Dura WT, Squire J, Rutka JT. Transcriptional profiling of medulloblastoma in children. J Neurosurg. 2003 Sep;99(3):534-41. [PubMed]
  22. Kaneta Y, Kagami Y, Tsunoda T, Ohno R, Nakamura Y, Katagiri T. Genome-wide analysis of gene-expression profiles in chronic myeloid leukemia cells using a cDNA microarray. Int J Oncol. 2003 Sep;23(3):681-91. [PubMed]
  23. Morikawa J, Li H, Kim S, Nishi K, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W, Kobayashi T. Identification of signature genes by microarray for acute myeloid leukemia without maturation and acute promyelocytic leukemia with t(15;17)(q22;q12)(PML/RARalpha). Int J Oncol. 2003 Sep;23(3):617-25. [PubMed]
  24. Weston G, Trajstman AC, Gargett CE, Manuelpillai U, Vollenhoven BJ, Rogers PA. Fibroids display an anti-angiogenic gene expression profile when compared with adjacent myometrium. Mol Hum Reprod. 2003 Sep;9(9):541-9. [PubMed]
  25. Mao X, Onadim Z, Price EA, Child F, Lillington DM, Russell-Jones R, Young BD, Whittaker S. Genomic alterations in blastic natural killer/extranodal natural killer-like T cell lymphoma with cutaneous involvement. J Invest Dermatol. 2003 Sep;121(3):618-27. [PubMed]
  26. Chen L, Goryachev A, Sun J, Kim P, Zhang H, Phillips MJ, Macgregor P, Lebel S, Edwards AM, Cao Q, Furuya KN. Altered expression of genes involved in hepatic morphogenesis and fibrogenesis are identified by cDNA microarray analysis in biliary atresia. Hepatology. 2003 Sep;38(3):567-576. [PubMed]
  27. Van Den Boom J, Wolter M, Kuick R, Misek DE, Youkilis AS, Wechsler DS, Sommer C, Reifenberger G, Hanash SM. Characterization of gene expression profiles associated with glioma progression using oligonucleotide-based microarray analysis and real-time reverse transcription-polymerase chain reaction. Am J Pathol. 2003 Sep;163(3):1033-43. [PubMed]
  28. Davies FE, Dring AM, Li C, Rawstron AC, Shammas MA, O'Connor SM, Fenton JA, Hideshima T, Chauhan D, Tai IT, Robinson E, Auclair D, Rees K, Gonzalez D, Ashcroft AJ, Dasgupta R, Mitsiades C, Mitsiades N, Chen LB, Wong WH, Munshi NC, Morgan GJ, Anderson KC. Insights into the multistep transformation of MGUS to myeloma using microarray expression analysis. Blood. 2003 Aug 28 [Epub ahead of print]  [PubMed]
  29. Grutzmann R, Foerder M, Alldinger I, Staub E, Brummendorf T, Ropcke S, Li X, Kristiansen G, Jesnowski R, Sipos B, Lohr M, Luttges J, Ockert D, Kloppel G, Saeger HD, Pilarsky C. Gene expression profiles of microdissected pancreatic ductal adenocarcinoma. Virchows Arch. 2003 Aug 27 [Epub ahead of print] [PubMed]
  30. Horsthemke B, Nazlican H, Husing J, Klein-Hitpass L, Claussen U, Michel S, Lich C, Gillessen-Kaesbach G, Buiting K. Somatic mosaicism for maternal uniparental disomy 15 in a girl with Prader-Willi syndrome: confirmation by cell cloning and identification of candidate downstream genes. Hum Mol Genet. 2003 Aug 27 [Epub ahead of print] [PubMed]
  31. Muhlbauer KR, Grone HJ, Ernst T, Grone E, Tschada R, Hergenhahn M, Hollstein M. Analysis of human prostate cancers and cell lines for mutations in the TP53 and KLF6 tumour suppressor genes. Br J Cancer. 2003 Aug 18;89(4):687-90. [PubMed]
  32. Donauer J, Rumberger B, Klein M, Faller D, Wilpert J, Sparna T, Schieren G, Rohrbach R, Dern P, Timmer J, Pisarski P, Kirste G, Walz G. Expression profiling on chronically rejected transplant kidneys. Transplantation. 2003 Aug 15;76(3):539-47. [PubMed]
  33. Tsutsumi S, Taketani T, Nishimura K, Ge X, Taki T, Sugita K, Ishii E, Hanada R, Ohki M, Aburatani H, Hayashi Y. Two Distinct Gene Expression Signatures in Pediatric Acute Lymphoblastic Leukemia with MLL Rearrangements. Cancer Res. 2003 Aug 15;63(16):4882-7. [PubMed]
  34. Rosen JM. Striking it Rich by Data Mining. Cell. 2003 Aug 8;114(3):271-2. [PubMed]
  35. Lamb J, Ramaswamy S, Ford HL, Contreras B, Martinez RV, Kittrell FS, Zahnow CA, Patterson N, Golub TR, Ewen ME. A Mechanism of Cyclin D1 Action Encoded in the Patterns of Gene Expression in Human Cancer. Cell. 2003 Aug 8;114(3):323-34. [PubMed][web supplement]
  36. Sato N, Fukushima N, Maehara N, Matsubayashi H, Koopmann J, Su GH, Hruban RH, Goggins M. SPARC/osteonectin is a frequent target for aberrant methylation in pancreatic adenocarcinoma and a mediator of tumor-stromal interactions. Oncogene. 2003 Aug 7;22(32):5021-30. [PubMed]
  37. Mori Y, Selaru FM, Sato F, Yin J, Simms LA, Xu Y, Olaru A, Deacu E, Wang S, Taylor JM, Young J, Leggett B, Jass JR, Abraham JM, Shibata D, Meltzer SJ. The impact of microsatellite instability on the molecular phenotype of colorectal tumors. Cancer Res. 2003 Aug 1;63(15):4577-82. [PubMed]
  38. Kohlmann A, Schoch C, Schnittger S, Dugas M, Hiddemann W, Kern W, Haferlach T. Molecular characterization of acute leukemias by use of microarray technology. Genes Chromosomes Cancer. 2003 Aug;37(4):396-405. [PubMed]
  39. Ko SY, Lin SC, Chang KW, Liu CJ, Chang SS, Lu SY, Liu TY. Modulation of KGF-1 gene expression in oral fibroblasts by ripe areca nut extract. J Oral Pathol Med. 2003 Aug;32(7):399-407. [PubMed]
  40. Chopra A, Brown KM, Rood BR, Packer RJ, MacDonald TJ. The use of gene expression analysis to gain insights into signaling mechanisms of metastatic medulloblastoma. Pediatr Neurosurg. 2003 Aug;39(2):68-74. [PubMed]
  41. Segal NH, Pavlidis P, Antonescu CR, Maki RG, Noble WS, DeSantis D, Woodruff JM, Lewis JJ, Brennan MF, Houghton AN, Cordon-Cardo C. Classification and subtype prediction of adult soft tissue sarcoma by functional genomics. Am J Pathol. 2003 Aug;163(2):691-700. [PubMed]
  42. Chen Y, Knosel T, Kristiansen G, Pietas A, Garber ME, Matsuhashi S, Ozaki I, Petersen I. Loss of PDCD4 expression in human lung cancer correlates with tumour progression and prognosis. J Pathol. 2003 Aug;200(5):640-6. [PubMed]
  43. Singhal S, Wiewrodt R, Malden LD, Amin KM, Matzie K, Friedberg J, Kucharczuk JC, Litzky LA, Johnson SW, Kaiser LR, Albelda SM. Gene Expression Profiling of Malignant Mesothelioma. Clin Cancer Res. 2003 Aug;9(8):3080-3097. [PubMed]
  44. Chen W, Fu X, Sun X, Sun T, Zhao Z, Sheng Z. Analysis of differentially expressed genes in keloids and normal skin with cDNA microarray. J Surg Res. 2003 Aug;113(2):208-16. [PubMed]
  45. van der Pouw Kraan TC, van Gaalen FA, Kasperkovitz PV, Verbeet NL, Smeets TJ, Kraan MC, Fero M, Tak PP, Huizinga TW, Pieterman E, Breedveld FC, Alizadeh AA, Verweij CL. Rheumatoid arthritis is a heterogeneous disease: evidence for differences in the activation of the STAT-1 pathway between rheumatoid tissues. Arthritis Rheum. 2003 Aug;48(8):2132-45. [PubMed]
  46. Singhal S, Wiewrodt R, Malden LD, Amin KM, Matzie K, Friedberg J, Kucharczuk JC, Litzky LA, Johnson SW, Kaiser LR, Albelda SM. Gene Expression Profiling of Malignant Mesothelioma. Clin Cancer Res. 2003 Aug;9(8):3080-3097. [PubMed]
  47. Ha PK, Benoit NE, Yochem R, Sciubba J, Zahurak M, Sidransky D, Pevsner J, Westra WH, Califano J. A Transcriptional Progression Model for Head and Neck Cancer. Clin Cancer Res. 2003 Aug;9(8):3058-3064. [PubMed]
  48. Kim IJ, Kang HC, Park JH, Shin Y, Ku JL, Lim SB, Park SY, Jung SY, Kim HK, Park JG. Development and Applications of a beta-Catenin Oligonucleotide Microarray: beta-Catenin Mutations Are Dominantly Found in the Proximal Colon Cancers with Microsatellite Instability. Clin Cancer Res. 2003 Aug;9(8):2920-2925. [PubMed]
  49. Catherino WH, Prupas C, Tsibris JC, Leppert PC, Payson M, Nieman LK, Segars JH. Strategy for elucidating differentially expressed genes in leiomyomata identified by microarray technology. Fertil Steril. 2003 Aug;80(2):282-90. [PubMed]
  50. Wang H, Mahadevappa M, Yamamoto K, Wen Y, Chen B, Warrington JA, Polan ML. Distinctive proliferative phase differences in gene expression in human myometrium and leiomyomata. Fertil Steril. 2003 Aug;80(2):266-76. [PubMed]
  51. Wu MM, Chiou HY, Ho IC, Chen CJ, Lee TC. Gene expression of inflammatory molecules in circulating lymphocytes from arsenic-exposed human subjects. Environ Health Perspect. 2003 Aug;111(11):1429-38. [PubMed]
  52. Bittel DC, Kibiryeva N, Talebizadeh Z, Butler MG. Microarray analysis of gene/transcript expression in Prader-Willi syndrome: deletion versus UPD. J Med Genet. 2003 Aug;40(8):568-74. [PubMed]
  53. Luzina IG, Atamas SP, Wise R, Wigley FM, Choi J, Xiao HQ, White B. Occurrence of an activated, profibrotic pattern of gene expression in lung CD8+ T cells from scleroderma patients. Arthritis Rheum. 2003 Aug;48(8):2262-74. [PubMed]
  54. Rangatia J, Vangala RK, Singh SM, Peer Zada AA, Elsasser A, Kohlmann A, Haferlach T, Tenen DG, Hiddemann W, Behre G. Elevated c-Jun expression in acute myeloid leukemias inhibits C/EBPalpha DNA binding via leucine zipper domain interaction. Oncogene. 2003 Jul 24;22(30):4760-4. [PubMed]
  55. Hashimoto T, Volk DW, Eggan SM, Mirnics K, Pierri JN, Sun Z, Sampson AR, Lewis DA. Gene expression deficits in a subclass of GABA neurons in the prefrontal cortex of subjects with schizophrenia. J Neurosci. 2003 Jul 16;23(15):6315-26. [PubMed]
  56. Pellagatti A, Vetrie D, Langford CF, Gama S, Eagleton H, Wainscoat JS, Boultwood J. Gene Expression Profiling in Polycythemia Vera Using cDNA Microarray Technology. Cancer Res. 2003 Jul 15;63(14):3940-3944. [PubMed]
  57. Barrett MT, Pritchard D, Palanca-Wessels C, Anderson J, Reid BJ, Rabinovitch PS. Molecular phenotype of spontaneously arising 4N (G2-tetraploid) intermediates of neoplastic progression in Barrett's esophagus. Cancer Res. 2003 Jul 15;63(14):4211-7. [PubMed]
  58. Henshall SM, Afar DE, Hiller J, Horvath LG, Quinn DI, Rasiah KK, Gish K, Willhite D, Kench JG, Gardiner-Garden M, Stricker PD, Scher HI, Grygiel JJ, Agus DB, Mack DH, Sutherland RL. Survival analysis of genome-wide gene expression profiles of prostate cancers identifies new prognostic targets of disease relapse. Cancer Res. 2003 Jul 15;63(14):4196-203. [PubMed]
  59. Miller CT, Aggarwal S, Lin TK, Dagenais SL, Contreras JI, Orringer MB, Glover TW, Beer DG, Lin L. Amplification and overexpression of the dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 (DYRK2) gene in esophageal and lung adenocarcinomas. Cancer Res. 2003 Jul 15;63(14):4136-43. [PubMed]
  60. Vanaja DK, Cheville JC, Iturria SJ, Young CY. Transcriptional silencing of zinc finger protein 185 identified by expression profiling is associated with prostate cancer progression. Cancer Res. 2003 Jul 15;63(14):3877-82. [PubMed]
  61. Su H, Hu N, Shih J, Hu Y, Wang QH, Chuang EY, Roth MJ, Wang C, Goldstein AM, Ding T, Dawsey SM, Giffen C, Emmert-Buck MR, Taylor PR. Gene expression analysis of esophageal squamous cell carcinoma reveals consistent molecular profiles related to a family history of upper gastrointestinal cancer. Cancer Res. 2003 Jul 15;63(14):3872-6. [PubMed]
  62. Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Demeter J, Perou CM, Lonning PE, Brown PO, Borresen-Dale AL, Botstein D. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8418-8423. [PubMed][pdf][web supplement]
  63. Keay S, Seillier-Moiseiwitsch F, Zhang CO, Chai TC, Zhang J. Changes in human bladder epithelial cell gene expression associated with interstitial cystitis or antiproliferative factor treatment. Physiol Genomics. 2003 Jul 7;14(2):107-15. [PubMed]
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  64. Hwang TS, Jeong JK, Park M, Han HS, Choi HK, Park TS. Detection and typing of HPV genotypes in various cervical lesions by HPV oligonucleotide microarray. Gynecol Oncol. 2003 Jul;90(1):51-6. [PubMed]
  65. Hyman T, Huizing M, Blumberg PM, Falik-Zaccai TC, Anikster Y, Gahl WA. Use of a cDNA microarray to determine molecular mechanisms involved in grey platelet syndrome. Br J Haematol. 2003 Jul;122(1):142-149. [PubMed]
  66. Hansel DE, Rahman A, Hidalgo M, Thuluvath PJ, Lillemoe KD, Shulick R, Ku JL, Park JG, Miyazaki K, Ashfaq R, Wistuba II, Varma R, Hawthorne L, Geradts J, Argani P, Maitra A. Identification of novel cellular targets in biliary tract cancers using global gene expression technology. Am J Pathol. 2003 Jul;163(1):217-29. [PubMed]
  67. Shvartsman HS, Lu KH, Lee J, Lillie J, Deavers MT, Clifford S, Wolf JK, Mills GB, Bast RC, Gershenson DM, Schmandt R. Overexpression of kallikrein 10 in epithelial ovarian carcinomas. Gynecol Oncol. 2003 Jul;90(1):44-50. [PubMed]
  68. Staal FJ, Van Der Burg M, Wessels LF, Barendregt BH, Baert MR, Van Den Burg CM, Van Huffel C, Langerak AW, Van Der Velden VH, Reinders MJ, Van Dongen JJ. DNA microarrays for comparison of gene expression profiles between diagnosis and relapse in precursor-B acute lymphoblastic leukemia: choice of technique and purification influence the identification of potential diagnostic markers. Leukemia. 2003 Jul;17(7):1324-32. [PubMed]
  69. Sreekumar R, Rosado B, Rasmussen D, Charlton M. Hepatic gene expression in histologically progressive nonalcoholic steatohepatitis. Hepatology. 2003 Jul;38(1):244-51. [PubMed]
  70. Visco AG, Yuan L. Differential gene expression in pubococcygeus muscle from patients with pelvic organ prolapse. Am J Obstet Gynecol. 2003 Jul;189(1):102-112. [PubMed]
  71. Pusztai L, Ayers M, Stec J, Clark E, Hess K, Stivers D, Damokosh A, Sneige N, Buchholz TA, Esteva FJ, Arun B, Cristofanilli M, Booser D, Rosales M, Valero V, Adams C, Hortobagyi GN, Symmans WF. Gene Expression Profiles Obtained from Fine-Needle Aspirations of Breast Cancer Reliably Identify Routine Prognostic Markers and Reveal Large-Scale Molecular Differences between Estrogen-negative and Estrogen-positive Tumors. Clin Cancer Res. 2003 Jul;9(7):2406-2415. [PubMed]
  72. Du JJ, Dou KF, Peng SY, Qian BZ, Xiao HS, Liu F, Wang WZ, Guan WX, Gao ZQ, Liu YB, Han ZG. Expression of NGF family and their receptors in gastric carcinoma: A cDNA microarray study. World J Gastroenterol. 2003 Jul;9(7):1431-4. [PubMed]
  73. Sok JC, Kuriakose MA, Mahajan VB, Pearlman AN, DeLacure MD, Chen FA. Tissue-specific gene expression of head and neck squamous cell carcinoma in vivo by complementary DNA microarray analysis. Arch Otolaryngol Head Neck Surg. 2003 Jul;129(7):760-70. [PubMed]
  74. Visco AG, Yuan L. Differential gene expression in pubococcygeus muscle from patients with pelvic organ prolapse. Am J Obstet Gynecol. 2003 Jul;189(1):102-12. [PubMed]
  75. Chen B, Wen Y, Zhang Z, Wang H, Warrington JA, Polan ML. Menstrual phase-dependent gene expression differences in periurethral vaginal tissue from women with stress incontinence. Am J Obstet Gynecol. 2003 Jul;189(1):89-97. [PubMed]

Diagnosis, prognosis and clinical applications

  1. Rosenwald A, Wright G, Leroy K, Yu X, Gaulard P, Gascoyne RD, Chan WC, Zhao T, Haioun C, Greiner TC, Weisenburger DD, Lynch JC, Vose J, Armitage JO, Smeland EB, Kvaloy S, Holte H, Delabie J, Campo E, Montserrat E, Lopez-Guillermo A, Ott G, Muller-Hermelink HK, Connors JM, Braziel R, Grogan TM, Fisher RI, Miller TP, LeBlanc M, Chiorazzi M, Zhao H, Yang L, Powell J, Wilson WH, Jaffe ES, Simon R, Klausner RD, Staudt LM. Molecular Diagnosis of Primary Mediastinal B Cell Lymphoma Identifies a Clinically Favorable Subgroup of Diffuse Large B Cell Lymphoma Related to Hodgkin Lymphoma. J Exp Med. 2003 Sep 15;198(6):851-62.  [PubMed][web supplement]
  2. Bleharski JR, Li H, Meinken C, Graeber TG, Ochoa MT, Yamamura M, Burdick A, Sarno EN, Wagner M, Rollinghoff M, Rea TH, Colonna M, Stenger S, Bloom BR, Eisenberg D, Modlin RL. Use of genetic profiling in leprosy to discriminate clinical forms of the disease. Science. 2003 Sep 12;301(5639):1527-30. [PubMed][web supplement]
  3. Sotiriou C, Neo SY, McShane LM, Korn EL, Long PM, Jazaeri A, Martiat P, Fox SB, Harris AL, Liu ET. Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10393-8. [PubMed][pdf]
  4. Chua MS, Mansfield E, Sarwal M. Applications of microarrays to renal transplantation: progress and possibilities. Front Biosci. 2003 Sep 1;8:S913-23. [PubMed]
  5. Shaughnessy J Jr. Primer on medical genomics. Part IX: scientific and clinical applications of DNA microarrays--multiple myeloma as a disease model. Mayo Clin Proc. 2003 Sep;78(9):1098-109. [PubMed]
  6. Simon R. Using DNA microarrays for diagnostic and prognostic prediction. Expert Rev Mol Diagn. 2003 Sep;3(5):587-95. [PubMed]
  7. Chen Y, Park S, Li Y, Missov E, Hou M, Han X, Hall JL, Miller LW, Bache RJ. Alterations of Gene Expression in Failing Myocardium Following Left Ventricular Assist Device Support. Physiol Genomics. 2003 Aug 15; [PubMed]
  8. Brenton JD, Caldas C. Predictive cancer genomics--what do we need? Lancet. 2003 Aug 2;362(9381):340-1. [PubMed]
  9. Segal NH, Pavlidis P, Antonescu CR, Maki RG, Noble WS, DeSantis D, Woodruff JM, Lewis JJ, Brennan MF, Houghton AN, Cordon-Cardo C. Classification and subtype prediction of adult soft tissue sarcoma by functional genomics. Am J Pathol. 2003 Aug;163(2):691-700. [PubMed]
  10. Levene AP, Morgan GJ, Davies FE. The use of genetic microarray analysis to classify and predict prognosis in haematological malignancies. Clin Lab Haematol. 2003 Aug;25(4):209-20. [PubMed]
  11. Boussioutas A, Haviv I. Current and potential uses for DNA microarrays in transplantation medicine: lessons from other disciplines. Tissue Antigens. 2003 Aug;62(2):93-103. [PubMed]
  12. Polan ML, Warrington JA, Chen B, Mahadevappa M, Wang H, Wen Y. Bench to bedside: clinical opportunities for microarray analysis. Fertil Steril. 2003 Aug;80(2):291-2.[PubMed]
  13. Liu CH, Ma WL, Shi R, Ou YQ, Zhang B, Zheng WL. Possibility of using DNA chip technology for diagnosis of human papillomavirus. J Biochem Mol Biol. 2003 Jul 31;36(4):349-53. [PubMed]
  14. Sarwal M, Chua MS, Kambham N, Hsieh SC, Satterwhite T, Masek M, Salvatierra O Jr. Molecular heterogeneity in acute renal allograft rejection identified by DNA microarray profiling. N Engl J Med. 2003 Jul 10;349(2):125-38. [PubMed]
  15. Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Demeter J, Perou CM, Lonning PE, Brown PO, Borresen-Dale AL, Botstein D. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8418-8423. [PubMed][pdf][web supplement]
  16. Staal FJ, Van Der Burg M, Wessels LF, Barendregt BH, Baert MR, Van Den Burg CM, Van Huffel C, Langerak AW, Van Der Velden VH, Reinders MJ, Van Dongen JJ. DNA microarrays for comparison of gene expression profiles between diagnosis and relapse in precursor-B acute lymphoblastic leukemia: choice of technique and purification influence the identification of potential diagnostic markers. Leukemia. 2003 Jul;17(7):1324-32. [PubMed]

Animal model studies

  1. Stenzel-Poore MP, Stevens SL, Xiong Z, Lessov NS, Harrington CA, Mori M, Meller R, Rosenzweig HL, Tobar E, Shaw TE, Chu X, Simon RP. Effect of ischaemic preconditioning on genomic response to cerebral ischaemia: similarity to neuroprotective strategies in hibernation and hypoxia-tolerant states. Lancet. 2003 Sep 27;362(9389):1028-37. [PubMed]
  2. Sakaida I, Jinhua S, Uchida K, Terai S, Okita K. Leptin receptor-deficient Zucker (fa/fa) rat retards the development of pig serum-induced liver fibrosis with Kupffer cell dysfunction. Life Sci. 2003 Sep 26;73(19):2491-501. [PubMed]
  3. Takahashi K, Mizuarai S, Araki H, Mashiko S, Ishihara A, Kanatani A, Itadani H, Kotani H. Adiposity elevates plasma MCP-1 levels leading to the increased CD11b-positive monocytes in mice. J Biol Chem. 2003 Sep 16 [Epub ahead of print] [PubMed]
  4. Okamoto T, Gohil K, Finkelstein EI, Bove P, Akaike T, Van Der Vliet A. Multiple contributing roles for NOS2 in LPS-induced acute airway inflammation in mice. Am J Physiol Lung Cell Mol Physiol. 2003 Sep 12 [Epub ahead of print] [PubMed]
  5. Vuillemenot BR, Rodriguez JF, Hoyle GW. Lymphoid Tissue and Emphysema in the Lungs of Transgenic Mice Inducibly Expressing TNF-{alpha} Am J Respir Cell Mol Biol. 2003 Sep 11 [Epub ahead of print] [PubMed]
  6. Matejuk A, Hopke C, Dwyer J, Subramanian S, Jones RE, Bourdette DN, Vandenbark AA, Offner H. CNS gene expression pattern associated with spontaneous experimental autoimmune encephalomyelitis. J Neurosci Res. 2003 Sep 1;73(5):667-78. [PubMed]
  7. Xu L, Hilliard B, Carmody RJ, Tsabary G, Shin H, Christianson DW, Chen YH. Arginase and autoimmune inflammation in the central nervous system. Immunology. 2003 Sep;110(1):141-8. [PubMed]
  8. Shankar K, Vaidya VS, Corton JC, Bucci TJ, Liu J, Waalkes MP, Mehendale HM. Activation of PPAR-alpha in streptozotocin-induced diabetes is essential for resistance against acetaminophen toxicity. FASEB J. 2003 Sep;17(12):1748-50. Epub 2003 Jul 18. [PubMed]
  9. Poggi SH, Goodwin KM, Hill JM, Brenneman DE, Tendi E, Schninelli S, Spong CY. Differential expression of c-fos in a mouse model of fetal alcohol syndrome. Am J Obstet Gynecol. 2003 Sep;189(3):786-9. [PubMed]
  10. Ellwood-Yen K, Graeber TG, Wongvipat J, Iruela-Arispe ML, Zhang J, Matusik R, Thomas GV, Sawyers CL. Myc-driven murine prostate cancer shares molecular features with human prostate tumors. Cancer Cell. 2003 Sep;4(3):223-38. [PubMed]
  11. Zheng M, Qian H, Joshi R, Nechtman J, Atherton S. DNA microarray analysis of the uninoculated eye following anterior chamber inoculation of HSV-1. Ocul Immunol Inflamm. 2003 Sep;11(3):187-95. [PubMed]
  12. Dyck PA, Hoda F, Osmer ES, Green RM. Microarray analysis of hepatic gene expression in gallstone-susceptible and gallstone-resistant mice. Mamm Genome. 2003 Sep;14(9):601-10. [PubMed]
  13. Surendran S, Rady PL, Michals-Matalon K, Quast MJ, Rassin DK, Campbell GA, Ezell EL, Wei J, Tyring SK, Szucs S, Matalon R. Expression of glutamate transporter, GABRA6, serine proteinase inhibitor 2 and low levels of glutamate and GABA in the brain of knock-out mouse for Canavan disease. Brain Res Bull. 2003 Aug 30;61(4):427-35. [PubMed]
  14. Dahl JL, Kraus CN, Boshoff HI, Doan B, Foley K, Avarbock D, Kaplan G, Mizrahi V, Rubin H, Barry CE 3rd. The role of RelMtb-mediated adaptation to stationary phase in long-term persistence of Mycobacterium tuberculosis in mice. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):10026-31. [PubMed][pdf]
  15. Erickson LM, Pan F, Ebbs A, Kobayashi M, Jiang H. Microarray-based gene expression profiles of allograft rejection and immunosuppression in the rat heart transplantation model. Transplantation. 2003 Aug 15;76(3):582-8. [PubMed]
  16. Gariboldi M, Spinola M, Milani S, Pignatiello C, Kadota K, Bono H, Hayashizaki Y, Dragani TA, Okazaki Y. Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice. Carcinogenesis. 2003 Aug 14 [Epub ahead of print] [PubMed]
  17. Moraes R, Blondet A, Birkenkamp-Demtroeder K, Tirard J, Orntoft T, Gertler A, Durand P, Naville D, Begeot M. Study of the alteration of gene expression in adipose tissue of diet-induced obesity (DIO) mice by microarray and RT-PCR analyses. Endocrinology. 2003 Aug 13 [Epub ahead of print] [PubMed]
  18. Mukherjee S, Belbin TJ, Spray DC, Iacobas DA, Weiss LM, Kitsis RN, Wittner M, Jelicks LA, Scherer PE, Ding A, Tanowitz HB. Microarray analysis of changes in gene expression in a murine model of chronic chagasic cardiomyopathy. Parasitol Res. 2003 Aug 9 [Epub ahead of print] [PubMed]
  19. Ueno S, Ohki R, Hashimoto T, Takizawa T, Takeuchi K, Yamashita Y, Ota J, Choi YL, Wada T, Koinuma K, Yamamoto K, Ikeda U, Shimada K, Mano H. DNA microarray analysis of in vivo progression mechanism of heart failure. Biochem Biophys Res Commun. 2003 Aug 8;307(4):771-7. [PubMed]
  20. Dillner K, Kindblom J, Flores-Morales A, Shao R, Tornell J, Norstedt G, Wennbo H. Gene Expression Analysis of Prostate Hyperplasia in Mice Overexpressing the Prolactin Gene Specifically in the Prostate. Endocrinology. 2003 Aug 7 [Epub ahead of print] [PubMed]
  21. Fornage M, Swank MW, Boerwinkle E, Doris PA. Gene Expression Profiling and Functional Proteomic Analysis Reveal Perturbed Kinase-Mediated Signaling in Genetic Stroke Susceptibility. Physiol Genomics. 2003 Aug 5 [Epub ahead of print] [PubMed]
  22. Porter JD, Merriam AP, Leahy P, Gong B, Khanna S. Dissection of temporal gene expression signatures of affected and spared muscle groups in dystrophin-deficient (mdx) mice. Hum Mol Genet. 2003 Aug 1;12(15):1813-21. [PubMed][web supplement]
  23. Quan C, Lu SJ. Identification of genes preferentially expressed in mammary epithelial cells of copenhagen rat using subtractive hybridization and microarrays. Carcinogenesis. 2003 Aug 1 [Epub ahead of print] [PubMed]
  24. Huang X, Hazlett LD. Hazlett Analysis of Pseudomonas aeruginosa Corneal Infection Using an Oligonucleotide Microarray. Invest Ophthal Vis Sci. 2003 Aug; 44: 3409-3416. [PubMed]
  25. Wilson KH, Eckenrode SE, Li QZ, Ruan QG, Yang P, Shi JD, Davoodi-Semiromi A, McIndoe RA, Croker BP, She JX. Microarray Analysis of Gene Expression in the Kidneys of New- and Post-Onset Diabetic NOD Mice. Diabetes. 2003 Aug;52(8):2151-2159. [PubMed]
  26. Fujiwara K, Ochiai M, Ubagai T, Ohki M, Ohta T, Nagao M, Sugimura T, Nakagama H. Differential gene expression profiles in colon epithelium of two rat strains with distinct susceptibility to colon carcinogenesis after exposure to PhIP in combination with dietary high fat. Cancer Sci. 2003 Aug;94(8):672-8. [PubMed]
  27. Glinsky GV, Krones-Herzig A, Glinskii AB, Gebauer G. Microarray analysis of xenograft-derived cancer cell lines representing multiple experimental models of human prostate cancer. Mol Carcinog. 2003 Aug;37(4):209-21. [PubMed]
  28. Polotsky VY, Li J, Punjabi NM, Rubin AE, Smith PL, Schwartz AR, O'Donnell CP. INTERMITTENT HYPOXIA INCREASES INSULIN RESISTANCE IN GENETICALLY OBESE MICE. J Physiol. 2003 Jul 23 [Epub ahead of print] [PubMed]
  29. Margalit O, Eisenbach L, Amariglio N, Kaminski N, Harmelin A, Pfeffer R, Shohat M, Rechavi G, Berger R. Overexpression of a set of genes, including WISP-1, common to pulmonary metastases of both mouse D122 Lewis lung carcinoma and B16-F10.9 melanoma cell lines. Br J Cancer. 2003 Jul 21;89(2):314-319. [PubMed]
  30. Zubakov D, Hoheisel JD, Kluxen FW, Brandle M, Ehring T, Hentsch B, Frohme M. Late ischemic preconditioning of the myocardium alters the expression of genes involved in inflammatory response. FEBS Lett. 2003 Jul 17;547(1-3):51-5. [PubMed]
  31. Blaxall BC, Spang R, Rockman HA, Koch WJ. Differential Myocardial Gene Expression in the Development and Rescue of Murine Heart Failure. Physiol Genomics. 2003 Jul 15 [Epub ahead of print] [PubMed]
  32. Sabbadini M, Barisani D, Conforti E, Marozzi A, Ginelli E, Miserocchi G, Meneveri R. Gene expression analysis in interstitial lung edema induced by saline infusion. Biochim Biophys Acta. 2003 Jul 14;1638(2):149-56. [PubMed]
  33. Garg N, Popov VL, Papaconstantinou J. Profiling gene transcription reveals a deficiency of mitochondrial oxidative phosphorylation in Trypanosoma cruzi-infected murine hearts: implications in chagasic myocarditis development. Biochim Biophys Acta. 2003 Jul 14;1638(2):106-20. [PubMed]
  34. Kiyama S, Morrison K, Zellweger T, Akbari M, Cox M, Yu D, Miyake H, Gleave ME. Castration-induced increases in insulin-like growth factor-binding protein 2 promotes proliferation of androgen-independent human prostate LNCaP tumors. Cancer Res. 2003 Jul 1;63(13):3575-84. [PubMed]
  35. Chaib H, MacDonald JW, Vessella RL, Washburn JG, Quinn JE, Odman A, Rubin MA, Macoska JA. Haploinsufficiency and reduced expression of genes localized to the 8p chromosomal region in human prostate tumors. Genes Chromosomes Cancer. 2003 Jul;37(3):306-13. [PubMed]
  36. Silverstein DM, Travis BR, Thornhill BA, Schurr JS, Kolls JK, Leung JC, Chevalier RL. Altered expression of immune modulator and structural genes in neonatal unilateral ureteral obstruction. Kidney Int. 2003 Jul;64(1):25-35. [PubMed]
  37. Zembutsu H, Ohnishi Y, Daigo Y, Katagiri T, Kikuchi T, Kakiuchi S, Nishime C, Hirata K, Nakamura Y. Gene-expression profiles of human tumor xenografts in nude mice treated orally with the EGFR tyrosine kinase inhibitor ZD1839. Int J Oncol. 2003 Jul;23(1):29-39. [PubMed]
  38. User HM, Zelner DJ, McKenna KE, McVary KT. Microarray Analysis and Description of Smr1 Gene in Rat Penis in a Post-Radical Prostatectomy Model of Erectile Dysfunction. J Urol. 2003 Jul;170(1):298-301. [PubMed]
  39. Van Der Meer-Van Kraaij C, Van Lieshout EM, Kramer E, Van Der Meer R, Keijer J. Mucosal pentraxin (Mptx), a novel rat gene 10-fold down-regulated in colon by dietary heme. FASEB J. 2003 Jul;17(10):1277-85. [PubMed]
  40. Creighton C, Kuick R, Misek DE, Rickman DS, Brichory FM, Rouillard JM, Omenn GS, Hanash S. Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice. Genome Biol. 2003 Jul;4(7):R46. [PubMed][pdf]
  41. User HM, Zelner DJ, McKenna KE, McVary KT. Microarray analysis and description of SMR1 gene in rat penis in a post-radical prostatectomy model of erectile dysfunction. J Urol. 2003 Jul;170(1):298-301. [PubMed]
  42. Mizoguchi E, Xavier RJ, Reinecker HC, Uchino H, Bhan AK, Podolsky DK, Mizoguchi A. Colonic epithelial functional phenotype varies with type and phase of experimental colitis. Gastroenterology. 2003 Jul;125(1):148-61. [PubMed]
  43. Kappler R, Calzada-Wack J, Schnitzbauer U, Koleva M, Herwig A, Piontek G, Graedler F, Adamski J, Heinzmann U, Schlegel J, Hemmerlein B, Quintanilla-Martinez L, Hahn H. Molecular characterization of Patched-associated rhabdomyosarcoma. J Pathol. 2003 Jul;200(3):348-56. [PubMed]
  44. Dutta R, Singh U, Li TB, Fornage M, Teng BB. Hepatic gene expression profiling reveals perturbed calcium signaling in a mouse model lacking both LDL receptor and Apobec1 genes. Atherosclerosis. 2003 Jul;169(1):51-62. [PubMed]
  45. Ong VH, Evans LA, Shiwen X, Fisher IB, Rajkumar V, Abraham DJ, Black CM, Denton CP. Monocyte chemoattractant protein 3 as a mediator of fibrosis: Overexpression in systemic sclerosis and the type 1 tight-skin mouse. Arthritis Rheum. 2003 Jul;48(7):1979-91.[PubMed]
  46. Komamura K, Shirotani-Ikejima H, Tatsumi R, Tsujita-Kuroda Y, Kitakaze M, Miyatake K, Sunagawa K, Miyata T. Differential gene expression in the rat skeletal and heart muscle in glucocorticoid-induced myopathy: analysis by microarray. Cardiovasc Drugs Ther. 2003 Jul;17(4):303-10. [PubMed]

In vitro studies

  1. Laytragoon-Lewin N, Chen F, Castro J, Avila-Carino J, Lewin F. Cytokines and Epstein Barr virus (EBV) genes expression in blood chronic lymphocytic leukaemia (CLL) cells and their immortalised CLL cell lines. Anticancer Res. 2003 Sep-Oct;23(5A):4017-22. [PubMed]
  2. Iyengar P, Combs TP, Shah SJ, Gouon-Evans V, Pollard JW, Albanese C, Flanagan L, Tenniswood MP, Guha C, Lisanti MP, Pestell RG, Scherer PE. Adipocyte-secreted factors synergistically promote mammary tumorigenesis through induction of anti-apoptotic transcriptional programs and proto-oncogene stabilization. Oncogene. 2003 Sep 25;22(41):6408-23. [PubMed]
  3. Hanekamp EE, Gielen SC, Smid-Koopman E, Kuhne LC, De Ruiter PE, Chadha-Ajwani S, Brinkmann AO, Grootegoed JA, Burger CW, Huikeshoven FJ, Blok LJ. Consequences of loss of progesterone receptor expression in development of invasive endometrial cancer. Clin Cancer Res. 2003 Sep 15;9(11):4190-9. [PubMed]
  4. Le Roch KG, Zhou Y, Blair PL, Grainger M, Moch JK, Haynes JD, De La Vega P, Holder AA, Batalov S, Carucci DJ, Winzeler EA. Discovery of gene function by expression profiling of the malaria parasite life cycle. Science. 2003 Sep 12;301(5639):1503-8. [PubMed][web supplement]
  5. Gallagher J, Howlin J, McCarthy C, Murphy EP, Bresnihan B, FitzGerald O, Godson C, Brady HR, Martin F. Identification of Naf1/ABIN-1 among TNF-small alpha, Greek-induced expressed genes in human synoviocytes using oligonucleotide microarrays. FEBS Lett. 2003 Sep 11;551(1-3):8-12. [PubMed]
  6. Van Der Velden PA, Zuidervaart W, Hurks MH, Pavey S, Ksander BR, Krijgsman E, Frants RR, Tensen CP, Willemze R, Jager MJ, Gruis NA. Expression profiling reveals that methylation of TIMP3 is involved in uveal melanoma development. Int J Cancer. 2003 Sep 10;106(4):472-9. [PubMed]
  7. Anzick SL, Azorsa DO, Simons SS Jr, Meltzer PS. Phenotypic alterations in breast cancer cells overexpressing the nuclear receptor co-activator AIB1. BMC Cancer. 2003 Sep 10;3(1):22. [PubMed]
  8. Leung YF, Tam PO, Lee WS, Lam DS, Yam HF, Fan BJ, Tham CC, Chua JK, Pang CP. The dual role of dexamethasone on anti-inflammation and outflow resistance demonstrated in cultured human trabecular meshwork cells. Mol Vis. 2003 Sep 5;9:425-39. [PubMed]
  9. Kramer MF, Cook WJ, Roth FP, Zhu J, Holman H, Knipe DM, Coen DM. Latent herpes simplex virus infection of sensory neurons alters neuronal gene expression. J Virol. 2003 Sep;77(17):9533-41. [PubMed]
  10. Danelishvili L, McGarvey J, Li YJ, Bermudez LE. Mycobacterium tuberculosis infection causes different levels of apoptosis and necrosis in human macrophages and alveolar epithelial cells. Cell Microbiol. 2003 Sep;5(9):649-660. [PubMed]  
  11. Yuza Y, Agawa M, Matsuzaki M, Yamada H, Urashima M. Gene and protein expression profiling during differentiation of neuroblastoma cells triggered by 13-cis retinoic acid. J Pediatr Hematol Oncol. 2003 Sep;25(9):715-20. [PubMed]
  12. Kunz M, Moeller S, Koczan D, Lorenz P, Wenger RH, Glocker MO, Thiesen HJ, Gross G, Ibrahim SM. Mechanisms of hypoxic gene regulation of angiogenesis factor Cyr61 in melanoma cells. J Biol Chem. 2003 Aug 25 [Epub ahead of print] [PubMed]
  13. Germann A, Dihlmann S, Hergenhahn M, Von Knebel Doeberitz M, Koesters R. Expression profiling of CC531 colon carcinoma cells reveals similar regulation of beta-catenin target genes by both butyrate and aspirin. Int J Cancer. 2003 Aug 20;106(2):187-97. [PubMed]
  14. Muhlbauer KR, Grone HJ, Ernst T, Grone E, Tschada R, Hergenhahn M, Hollstein M. Analysis of human prostate cancers and cell lines for mutations in the TP53 and KLF6 tumour suppressor genes. Br J Cancer. 2003 Aug 18;89(4):687-90. [PubMed]
  15. Semnani RT, Liu AY, Sabzevari H, Kubofcik J, Zhou J, Gilden JK, Nutman TB. Brugia malayi Microfilariae Induce Cell Death in Human Dendritic Cells, Inhibit Their Ability to Make IL-12 and IL-10, and Reduce Their Capacity to Activate CD4(+) T Cells. J Immunol. 2003 Aug 15;171(4):1950-1960. [PubMed]
  16. Raetz EA, Kim MK, Moos P, Carlson M, Bruggers C, Hooper DK, Foot L, Liu T, Seeger R, Carroll WL. Identification of genes that are regulated transcriptionally by Myc in childhood tumors. Cancer. 2003 Aug 15;98(4):841-53. [PubMed]
  17. Iwashita T, Kruger GM, Pardal R, Kiel MJ, Morrison SJ. Hirschsprung disease is linked to defects in neural crest stem cell function. Science. 2003 Aug 15;301(5635):972-6. [PubMed]
  18. Yeh CT, Lu SC, Tseng IC, Lai HY, Tsao ML, Huang SF, Liaw YF. Antisense overexpression of BMAL2 enhances cell proliferation. Oncogene. 2003 Aug 14;22(34):5306-14. [PubMed]
  19. Wang H, Wang H, Shen W, Huang H, Hu L, Ramdas L, Zhou YH, Liao WS, Fuller GN, Zhang W. Insulin-like growth factor binding protein 2 enhances glioblastoma invasion by activating invasion-enhancing genes. Cancer Res. 2003 Aug 1;63(15):4315-21. [PubMed]
  20. Lim JW, Kim H, Kim KH. Cell adhesion-related gene expression by Helicobacter pylori in gastric epithelial AGS cells. Int J Biochem Cell Biol. 2003 Aug;35(8):1284-96. [PubMed]
  21. Binnicker MJ, Williams RD, Apicella MA. Infection of human urethral epithelium with Neisseria gonorrhoeae elicits an upregulation of host anti-apoptotic factors and protects cells from staurosporine-induced apoptosis. Cell Microbiol. 2003 Aug;5(8):549-60. [PubMed]
  22. Yoneda K, Chang MM, Chmiel K, Chen Y, Wu R. Application of high-density DNA microarray to study smoke- and hydrogen peroxide-induced injury and repair in human bronchial epithelial cells. J Am Soc Nephrol. 2003 Aug;14 Suppl 3:S284-9. [PubMed]
  23. Koria P, Brazeau D, Kirkwood K, Hayden P, Klausner M, Andreadis ST. Gene Expression Profile of Tissue Engineered Skin Subjected to Acute Barrier Disruption. J Invest Dermatol. 2003 Aug;121(2):368-382. [PubMed]
  24. Kawamata H, Furihata T, Omotehara F, Sakai T, Horiuchi H, Shinagawa Y, Imura J, Ohkura Y, Tachibana M, Kubota K, Terano A, Fujimori T. Identification of genes differentially expressed in a newly isolated human metastasizing esophageal cancer cell line, T.Tn-AT1, by cDNA microarray. Cancer Sci. 2003 Aug;94(8):699-706. [PubMed]
  25. Kim IJ, Kang HC, Park JH, Shin Y, Ku JL, Lim SB, Park SY, Jung SY, Kim HK, Park JG. Development and Applications of a beta-Catenin Oligonucleotide Microarray: beta-Catenin Mutations Are Dominantly Found in the Proximal Colon Cancers with Microsatellite Instability. Clin Cancer Res. 2003 Aug;9(8):2920-2925. [PubMed]
  26. Robinson M, Jiang P, Cui J, Li J, Wang Y, Swaroop M, Madore S, Lawrence TS, Sun Y. Global Genechip Profiling to Identify Genes Responsive to p53-Induced Growth Arrest and Apoptosis in Human Lung Carcinoma Cells. Cancer Biol Ther. 2003 Jul-Aug;2(4):406-15. [PubMed]
  27. Leonard MO, Cottell DC, Godson C, Brady HR, Taylor CT. The role of HIF-1alpha in transcriptional regulation of the proximal tubular epithelial cell response to hypoxia. J Biol Chem. 2003 Jul 28 [Epub ahead of print] [PubMed]
  28. Jaggi M, Rao PS, Smith DJ, Hemstreet GP, Balaji KC. Protein kinase C mu is down-regulated in androgen-independent prostate cancer. Biochem Biophys Res Commun. 2003 Jul 25;307(2):254-260. [PubMed]
  29. Franzen B, Duvefelt K, Jonsson C, Engelhardt B, Ottervald J, Wickman M, Yang Y, Schuppe-Koistinen I. Gene and protein expression profiling of human cerebral endothelial cells activated with tumor necrosis factor-alpha. Brain Res Mol Brain Res. 2003 Jul 23;115(2):130-46. [PubMed]
  30. Margalit O, Eisenbach L, Amariglio N, Kaminski N, Harmelin A, Pfeffer R, Shohat M, Rechavi G, Berger R. Overexpression of a set of genes, including WISP-1, common to pulmonary metastases of both mouse D122 Lewis lung carcinoma and B16-F10.9 melanoma cell lines. Br J Cancer. 2003 Jul 21;89(2):314-319. [PubMed]
  31. George MD, Sankaran S, Reay E, Gelli AC, Dandekar S. High-throughput gene expression profiling indicates dysregulation of intestinal cell cycle mediators and growth factors during primary simian immunodeficiency virus infection. Virology. 2003 Jul 20;312(1):84-94. [PubMed]
  32. Mora J, Gerald WL, Cheung NK. Evolving significance of prognostic markers associated with new treatment strategies in neuroblastoma. Cancer Lett. 2003 Jul 18;197(1-2):119-24. [PubMed]
  33. Renou JP, Bierie B, Miyoshi K, Cui Y, Djiane J, Reichenstein M, Shani M, Hennighausen L. Identification of genes differentially expressed in mouse mammary epithelium transformed by an activated beta-catenin. Oncogene. 2003 Jul 17;22(29):4594-610. [PubMed]
  34. Dooley TP, Reddy SP, Wilborn TW, Davis RL. Biomarkers of human cutaneous squamous cell carcinoma from tissues and cell lines identified by DNA microarrays and qRT-PCR. Biochem Biophys Res Commun. 2003 Jul 11;306(4):1026-36. [PubMed]
  35. Li Z, Van Calcar S, Qu C, Cavenee WK, Zhang MQ, Ren B. A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells. Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8164-9. [PubMed][pdf][web supplement]
  36. Kiyama S, Morrison K, Zellweger T, Akbari M, Cox M, Yu D, Miyake H, Gleave ME. Castration-induced increases in insulin-like growth factor-binding protein 2 promotes proliferation of androgen-independent human prostate LNCaP tumors. Cancer Res. 2003 Jul 1;63(13):3575-84. [PubMed]
  37. Ramos-Nino ME, Scapoli L, Martinelli M, Land S, Mossman BT. Microarray analysis and RNA silencing link fra-1 to cd44 and c-met expression in mesothelioma. Cancer Res. 2003 Jul 1;63(13):3539-45. [PubMed]
  38. Hansel DE, Rahman A, Hidalgo M, Thuluvath PJ, Lillemoe KD, Shulick R, Ku JL, Park JG, Miyazaki K, Ashfaq R, Wistuba II, Varma R, Hawthorne L, Geradts J, Argani P, Maitra A. Identification of novel cellular targets in biliary tract cancers using global gene expression technology. Am J Pathol. 2003 Jul;163(1):217-29. [PubMed]
  39. Shvartsman HS, Lu KH, Lee J, Lillie J, Deavers MT, Clifford S, Wolf JK, Mills GB, Bast RC, Gershenson DM, Schmandt R. Overexpression of kallikrein 10 in epithelial ovarian carcinomas. Gynecol Oncol. 2003 Jul;90(1):44-50. [PubMed]
  40. Svensson PA, Englund MC, Markstrom E, Ohlsson BG, Jernas M, Billig H, Torgerson JS, Wiklund O, Carlsson LM, Carlsson B. Copper induces the expression of cholesterogenic genes in human macrophages. Atherosclerosis. 2003 Jul;169(1):71-6. [PubMed]
  41. Gonzalez HE, Gujrati M, Frederick M, Henderson Y, Arumugam J, Spring PW, Mitsudo K, Kim HW, Clayman GL. Identification of 9 genes differentially expressed in head and neck squamous cell carcinoma. Arch Otolaryngol Head Neck Surg. 2003 Jul;129(7):754-9. [PubMed]
  42. Izuhara K. The role of interleukin-4 and interleukin-13 in the non-immunologic aspects of asthma pathogenesis. Clin Chem Lab Med. 2003 Jul;41(7):860-4. [PubMed]
  43. Hapke S, Kessler H, Luber B, Benge A, Hutzler P, Hofler H, Schmitt M, Reuning U. Ovarian cancer cell proliferation and motility is induced by engagement of integrin alpha(v)beta3/Vitronectin interaction. Biol Chem. 2003 Jul;384(7):1073-83. [PubMed]

Basic science studies

  1. Chi JT, Chang HY, Haraldsen G, Jahnsen FL, Troyanskaya OG, Chang DS, Wang Z, Rockson SG, Van De Rijn M, Botstein D, Brown PO. Endothelial cell diversity revealed by global expression profiling. Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):10623-8. [PubMed][PDF][web supplement]
  2. Vasseur S, Hoffmeister A, Garcia-Montero A, Barthet M, Saint-Michel L, Berthezene P, Fiedler F, Closa D, Dagorn JC, Iovanna JL. Mice with targeted disruption of p8 gene show increased sensitivity to lipopolysaccharide; DNA microarray analysis of livers reveals an aberrant gene expression response. BMC Gastroenterol. 2003 Sep 8 [Epub ahead of print] [PubMed]
  3. Lerner RS, Seiser RM, Zheng T, Lager PJ, Reedy MC, Keene JD, Nicchitta CV. Partitioning and translation of mRNAs encoding soluble proteins on membrane-bound ribosomes. RNA. 2003 Sep;9(9):1123-1137. [PubMed]
  4. Cheng G, Mustari MJ, Khanna S, Porter JD. Comprehensive Evaluation of the Extraocular Muscle Critical Period by Expression Profiling in the Dark-Reared Rat and Monocularly Deprived Monkey. Invest Ophthalmol Vis Sci. 2003 Sep;44(9):3842-3855. [PubMed]
  5. Dudouet B, Burnett R, Dickinson LA, Wood MR, Melander C, Belitsky JM, Edelson B, Wurtz N, Briehn C, Dervan PB, Gottesfeld JM. Accessibility of nuclear chromatin by DNA binding polyamides. Chem Biol. 2003 Sep;10(9):859-67. [PubMed]
  6. Kaplan CD, Laprade L, Winston F. Transcription elongation factors repress transcription initiation from cryptic sites. Science. 2003 Aug 22;301(5636):1096-9. [PubMed]
  7. Alonso A, Mahmood R, Li S, Cheung F, Yoda K, Warburton PE. Genomic microarray analysis reveals distinct locations for the CENP-A binding domains in three human chromosome 13q32 neocentromeres. Hum Mol Genet. 2003 Aug 19 [Epub ahead of print] [PubMed]
  8. Yang E, Van Nimwegen E, Zavolan M, Rajewsky N, Schroeder M, Magnasco M, Darnell JE Jr. Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence Attributes. Genome Res. 2003 Aug;13(8):1863-72. [PubMed][pdf][web supplement]
  9. Lo HS, Wang Z, Hu Y, Yang HH, Gere S, Buetow KH, Lee MP. Allelic variation in gene expression is common in the human genome. Genome Res. 2003 Aug;13(8):1855-62. [PubMed][pdf][web supplement]
  10. Koehler AN, Shamji AF, Schreiber SL. Discovery of an Inhibitor of a Transcription Factor Using Small Molecule Microarrays and Diversity-Oriented Synthesis. J Am Chem Soc. 2003 Jul 16;125(28):8420-8421. [PubMed]
  11. Brock AL, Huang S, Ingber DE. Identification of a distinct class of cytoskeleton-associated mRNAs using microarray technology. BMC Cell Biol. 2003 Jul 8 [Epub ahead of print] [PubMed][pdf]
  12. Toyoda N, Nagai S, Terashima Y, Motomura K, Haino M, Hashimoto S, Takizawa H, Matsushima K. Analysis of mRNA With Microsomal Fractionation Using a SAGE-Based DNA Microarray System Facilitates Identification of the Genes Encoding Secretory Proteins. Genome Res. 2003 Jul;13(7):1728-36. [PubMed][pdf]
  13. Makova KD, Li WH. Divergence in the spatial pattern of gene expression between human duplicate genes. Genome Res. 2003 Jul;13(7):1638-45. [PubMed][pdf][web supplement]
  14. <>Khanna S, Merriam AP, Gong B, Leahy P, Porter JD. Comprehensive expression profiling by muscle tissue class and identification of the molecular niche of extraocular muscle. FASEB J. 2003 Jul;17(10):1370-2. [PubMed]

Gene product function

  1. Jiang X, Norman M, Li X. Use of an array technology for profiling and comparing transcription factors activated by TNFalpha and PMA in HeLa cells. Biochim Biophys Acta. 2003 Sep 23;1642(1-2):1-8. [PubMed]
  2. Hibi K, Fujitake S, Takase T, Kodera Y, Ito K, Akiyama S, Shirane M, Nakao A. Identification of S100A2 as a Target of the DeltaNp63 Oncogenic Pathway. Clin Cancer Res. 2003 Sep 15;9(11):4282-5. [PubMed]
  3. Tien ES, Gray JP, Peters JM, Vanden Heuvel JP. Comprehensive gene expression analysis of peroxisome proliferator-treated immortalized hepatocytes: identification of peroxisome proliferator-activated receptor alpha-dependent growth regulatory genes. Cancer Res. 2003 Sep 15;63(18):5767-80. [PubMed]
  4. Harris SE, Guo D, Harris MA, Krishnaswamy A, Lichtler A. Transcriptional regulation of BMP-2 activated genes in osteoblasts using gene expression microarray analysis: role of DLX2 and DLX5 transcription factors. Front Biosci. 2003 Sep 1;8:S1249-65. [PubMed]
  5. Chennathukuzhi V, Stein JM, Abel T, Donlon S, Yang S, Miller JP, Allman DM, Simmons RA, Hecht NB. Mice deficient for testis-brain RNA-binding protein exhibit a coordinate loss of TRAX, reduced fertility, altered gene expression in the brain, and behavioral changes. Mol Cell Biol. 2003 Sep;23(18):6419-34. [PubMed]
  6. Hodgkinson CP, Ye S. Microarray analysis of peroxisome proliferator-activated receptor-gamma induced changes in gene expression in macrophages. Biochem Biophys Res Commun. 2003 Aug 29;308(3):505-10. [PubMed]
  7. Ueda K, Arakawa H, Nakamura Y. Dual-specificity phosphatase 5 (DUSP5) as a direct transcriptional target of tumor suppressor p53. Oncogene. 2003 Aug 28;22(36):5586-91. [PubMed]
  8. Liu C, Goshu E, Wells A, Fan CM. Identification of the downstream targets of SIM1 and ARNT2, a pair of transcription factors essential for neuroendocrine cell differentiation. J Biol Chem. 2003 Aug 28 [Epub ahead of print] [PubMed]
  9. Fass DM, Butler JE, Goodman RH. Deacetylase activity is required for cAMP activation of a subset of CREB target genes. J Biol Chem. 2003 Aug 25 [Epub ahead of print] [PubMed]
  10. Yun J, Gaivin RJ, McCune DF, Boongird A, Papay RS, Ying Z, Gonzalez-Cabrera PJ, Najm I, Perez DM.  Gene expression profile of neurodegeneration induced by {alpha}1B-adrenergic receptor overactivity: NMDA/GABAA dysregulation and apoptosis. Brain. 2003 Aug 22 [Epub ahead of print] [PubMed]
  11. Kim S, Choi Y, Bazer FW, Spencer TE. Identification of Genes in the Ovine Endometrium Regulated by Interferon Tau Independent of STAT1. Endocrinology. 2003 Aug 22 [Epub ahead of print][PubMed]
  12. Hoey T, Zhang S, Schmidt N, Yu Q, Ramchandani S, Xu X, Naeger LK, Sun YL, Kaplan MH. Distinct requirements for the naturally occurring splice forms Stat4alpha and Stat4beta in IL-12 responses. EMBO J. 2003 Aug 15;22(16):4237-4248. [PubMed]
  13. Raetz EA, Kim MK, Moos P, Carlson M, Bruggers C, Hooper DK, Foot L, Liu T, Seeger R, Carroll WL. Identification of genes that are regulated transcriptionally by Myc in childhood tumors. Cancer. 2003 Aug 15;98(4):841-53. [PubMed]
  14. Okinaga S, Slattery D, Humbles A, Zsengeller Z, Morteau O, Kinrade MB, Brodbeck RM, Krause JE, Choe HR, Gerard NP, Gerard C. C5L2, a Nonsignaling C5A Binding Protein. Biochemistry. 2003 Aug 12;42(31):9406-15. [PubMed]
  15. Omoto Y, Eguchi H, Yamamoto-Yamaguchi Y, Hayashi S. Estrogen receptor (ER) beta1 and ERbetacx/beta2 inhibit ERalpha function differently in breast cancer cell line MCF7. Oncogene. 2003 Aug 7;22(32):5011-20. [PubMed]
  16. Kuwata H, Watanabe Y, Miyoshi H, Yamamoto M, Kaisho T, Takeda K, Akira S. IL-10-inducible Bcl-3 negatively regulates LPS-induced TNF-{alpha} production in macrophages. Blood. 2003 Aug 7 [Epub ahead of print] [PubMed]
  17. Maxwell KN, Soccio RE, Duncan EM, Sehayek E, Breslow JL. Novel putative SREBP and LXR target genes identified by microarray analysis in liver of cholesterol-fed mice. J Lipid Res. 2003 Aug 1 [Epub ahead of print] [PubMed]
  18. Wang H, Wang H, Shen W, Huang H, Hu L, Ramdas L, Zhou YH, Liao WS, Fuller GN, Zhang W. Insulin-like growth factor binding protein 2 enhances glioblastoma invasion by activating invasion-enhancing genes. Cancer Res. 2003 Aug 1;63(15):4315-21. [PubMed]
  19. Lin Y, Ryan J, Lewis J, Wani MA, Lingrel JB, Liu ZG. TRAF2 exerts its antiapoptotic effect by regulating the expression of Kruppel-like factor LKLF. Mol Cell Biol. 2003 Aug;23(16):5849-56. [PubMed]
  20. Farrow B, O'connor KL, Hashimoto K, Iwamura T, Evers BM. Selective activation of PPARgamma inhibits pancreatic cancer invasion and decreases expression of tissue plasminogen activator. Surgery. 2003 Aug;134(2):206-12. [PubMed]
  21. Burns TF, El-Deiry WS. Microarray Analysis of p53 Target Gene Expression Patterns in the Spleen and Thymus in Response to Ionizing Radiation. Cancer Biol Ther. 2003 Jul-Aug;2(4):431-43. [PubMed]
  22. Gudkov A. Microarray Analysis of p53-Mediated Transcription: Multi-Thousand Piece Puzzle or Invitation to Collective Thinking. Cancer Biol Ther. 2003 Jul-Aug;2(4):444-5. [PubMed]
  23. Sax JK, Stoddard A, Murphy ME, Chodosh L, El-Deiry WS. Microarray Expression Profiling of p53-Dependent Transcriptional Changes in an Immortalized Mouse Embryo Fibroblast Cell Line. Cancer Biol Ther. 2003 Jul-Aug;2(4):416-30. [PubMed]
  24. Rosner M, Hofer K, Kubista M, Hengstschlager M. Cell size regulation by the human TSC tumor suppressor proteins depends on PI3K and FKBP38. Oncogene. 2003 Jul 31;22(31):4786-98. [PubMed]
  25. Li M, Zhang SS, Barnstable CJ. Developmental and tissue expression patterns of mouse Mpp4 gene. Biochem Biophys Res Commun. 2003 Jul 25;307(2):229-35. [PubMed]
  26. Pandini G, Medico E, Conte E, Sciacca L, Vigneri R, Belfiore A. Differential gene expression induced by insulin and IGF-ii through the insulin receptor isoform A. J Biol Chem. 2003 Jul 24 [Epub ahead of print] [PubMed]
  27. Franzen B, Duvefelt K, Jonsson C, Engelhardt B, Ottervald J, Wickman M, Yang Y, Schuppe-Koistinen I. Gene and protein expression profiling of human cerebral endothelial cells activated with tumor necrosis factor-alpha. Brain Res Mol Brain Res. 2003 Jul 23;115(2):130-46. [PubMed]
  28. Kim U, Siegel R, Ren X, Gunther CS, Gaasterland T, Roeder RG. Identification of transcription coactivator OCA-B-dependent genes involved in antigen-dependent B cell differentiation by cDNA array analyses. Proc Natl Acad Sci U S A. 2003 Jul 22;100(15):8868-73. [PubMed][pdf]
  29. Li Z, Van Calcar S, Qu C, Cavenee WK, Zhang MQ, Ren B. A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells. Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8164-9. [PubMed][pdf][web supplement]
  30. Lee JM, Shih AY, Murphy TH, Johnson JA. NF-E2-related factor 2 mediates neuroprotection against mitochondrial complex I inhibitors and increased concentrations of Intracellular calcium in primary cortical neurons. J Biol Chem. 2003 Jul 3 [Epub ahead of print] [PubMed]
  31. Black EP, Huang E, Dressman H, Rempel R, Laakso N, Asa SL, Ishida S, West M, Nevins JR. Distinct gene expression phenotypes of cells lacking Rb and Rb family members. Cancer Res. 2003 Jul 1;63(13):3716-23. [PubMed]
  32. Klonowski-Stumpe H, Reinehr R, Fischer R, Warskulat U, Luthen R, Haussinger D. Production and effects of endothelin-1 in rat pancreatic stellate cells. Pancreas. 2003 Jul;27(1):67-74. [PubMed]
  33. El Alami M, Messenguy F, Scherens B, Dubois E. Arg82p is a bifunctional protein whose inositol polyphosphate kinase activity is essential for nitrogen and PHO gene expression but not for Mcm1p chaperoning in yeast. Mol Microbiol. 2003 Jul;49(2):457-68. [PubMed]
  34. Sasson R, Dantes A, Tajima K, Amsterdam A. Novel genes modulated by FSH in normal and immortalized FSH-responsive cells: new insights into the mechanism of FSH action. FASEB J. 2003 Jul;17(10):1256-66. [PubMed]
  35. Mason RJ, Pan T, Edeen KE, Nielsen LD, Zhang F, Longphre M, Eckart MR, Neben S. Keratinocyte growth factor and the transcription factors C/EBP alpha, C/EBP delta, and SREBP-1c regulate fatty acid synthesis in alveolar type II cells. J Clin Invest. 2003 Jul;112(2):244-55. [PubMed][pdf]
  36. Izuhara K. The role of interleukin-4 and interleukin-13 in the non-immunologic aspects of asthma pathogenesis. Clin Chem Lab Med. 2003 Jul;41(7):860-4. [PubMed]

General physiology

  1. Liang M, Cowley Jr AW, Greene AS. High throughput gene expression profiling: A molecular approach to integrative physiology. J Physiol. 2003 Sep 26 [Epub ahead of print] [PubMed]
  2. Skelton L, Cooper M, Murphy M, Platt A. Human Immature Monocyte-Derived Dendritic Cells Express the G Protein-Coupled Receptor GPR105 (KIAA0001, P2Y(14)) and Increase Intracellular Calcium in Response to its Agonist, Uridine Diphosphoglucose. J Immunol. 2003 Aug 15;171(4):1941-9. [PubMed]
  3. Fertuck KC, Eckel JE, Gennings C, Zacharewski TR. Identification of temporal patterns of gene expression in the uteri of immature, ovariectomized mice following exposure to ethynylestradiol. Physiol Genomics. 2003 Aug 12 [Epub ahead of print] [PubMed] 
  4. Gifford SM, Cale JM, Tsoi S, Magness RR, Bird IM. Pregnancy-specific changes in uterine artery endothelial cell signaling in vivo are both programmed and retained in primary culture. Endocrinology. 2003 Aug;144(8):3639-50. [PubMed]
  5. Tan YF, Li FX, Piao YS, Sun XY, Wang YL. Global gene profiling analysis of mouse uterus during the oestrous cycle. Reproduction. 2003 Aug;126(2):171-82. [PubMed]
  6. Smith L, Van Hateren N, Willan J, Romero R, Blanco G, Siggers P, Walsh J, Banerjee R, Denny P, Ponting C, Greenfield A. Candidate testis-determining gene, Maestro (Mro), encodes a novel HEAT repeat protein. Dev Dyn. 2003 Aug;227(4):600-7. [PubMed]
  7. Marko NF, Dieffenbach PB, Yan G, Ceryak S, Howell RW, McCaffrey TA, Hu VW. Does metabolic radiolabeling stimulate the stress response? Gene expression profiling reveals differential cellular responses to internal beta vs. external gamma radiation. FASEB J. 2003 Aug;17(11):1470-86. [PubMed]
  8. Reverter A, Byrne KA, Brucet HL, Wang YH, Dalrymple BP, Lehnert SA. A mixture model-based cluster analysis of DNA microarray gene expression data on Brahman and Brahman composite steers fed high-, medium-, and low-quality diets. J Anim Sci. 2003 Aug;81(8):1900-10. [PubMed]
  9. Gems D, McElwee JJ. Ageing: Microarraying mortality. Nature. 2003 Jul 17;424(6946):259-61. [PubMed]
  10. Murphy CT, McCarroll SA, Bargmann CI, Fraser A, Kamath RS, Ahringer J, Li H, Kenyon C. Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans. Nature. 2003 Jul 17;424(6946):277-83. [PubMed]
  11. Kang MK, Kameta A, Shin KH, Baluda MA, Kim HR, Park NH. Senescence-associated genes in normal human oral keratinocytes. Exp Cell Res. 2003 Jul 15;287(2):272-81. [PubMed]
  12. Oishi K, Miyazaki K, Kadota K, Kikuno R, Nagase T, Atsumi GI, Ohkura N, Azama T, Mesaki M, Yukimasa S, Kobayashi H, Iitaka C, Umehara T, Horikoshi M, Kudo T, Shimizu Y, Yano M, Monden M, Machida K, Matsuda J, Shuichi H, Todo T, Ishida N. Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes. J Biol Chem. 2003 Jul 15 [Epub ahead of print] [PubMed]
  13. Welle S, Brooks AI, Delehanty JM, Needler N, Thornton CA. Gene expression profile of aging in human muscle. Physiol Genomics. 2003 Jul 7;14(2):149-59. [PubMed]
  14. Norata GD, Pellegatta F, Hamsten A, Catapano AL, Eriksson P. Effects of HDL3 on the expression of matrix-degrading proteases in human endothelial cells. Int J Mol Med. 2003 Jul;12(1):73-8. [PubMed]
  15. Tafti M, Petit B, Chollet D, Neidhart E, De Bilbao F, Kiss JZ, Wood PA, Franken P. Deficiency in short-chain fatty acid beta-oxidation affects theta oscillations during sleep. Nat Genet. 2003 Jul;34(3):320-5. [PubMed]
  16. Kaestner KH, Lee CS, Scearce LM, Brestelli JE, Arsenlis A, Le PP, Lantz KA, Crabtree J, Pizarro A, Mazzarelli J, Pinney D, Fischer S, Manduchi E, Stoeckert CJ Jr, Gradwohl G, Clifton SW, Brown JR, Inoue H, Cras-Meneur C, Permutt MA. Transcriptional Program of the Endocrine Pancreas in Mice and Humans. Diabetes. 2003 Jul;52(7):1604-1610. [PubMed]
  17. Yamada-Okabe T, Satoh Y, Yamada-Okabe H. Thyroid hormone induces the expression of 4-1BB and activation of caspases in a thyroid hormone receptor-dependent manner. Eur J Biochem. 2003 Jul;270(14):3064-3073. [PubMed]

Development & differentiation

  1. Seshi B, Kumar S, King D. Multilineage gene expression in human bone marrow stromal cells as evidenced by single-cell microarray analysis. Blood Cells Mol Dis. 2003 Sep-Oct;31(2):268-85. [PubMed]
  2. Baek JH, Lee G, Kim SN, Kim JM, Kim M, Chung SC, Min BM. Common genes responsible for differentiation and senescence of human mucosal and epidermal keratinocytes. Int J Mol Med. 2003 Sep;12(3):319-25. [PubMed]
  3. Liu C, Goshu E, Wells A, Fan CM. Identification of the downstream targets of SIM1 and ARNT2, a pair of transcription factors essential for neuroendocrine cell differentiation. J Biol Chem. 2003 Aug 28 [Epub ahead of print] [PubMed]
  4. Song JH, Kim JM, Kim SH, Kim HJ, Lee JJ, Sung MH, Hwang SY, Kim TS. Comparison of the gene expression profiles of monocytic versus granulocytic lineages of HL-60 leukemia cell differentiation by DNA microarray analysis. Life Sci. 2003 Aug 15;73(13):1705-19. [PubMed]
  5. Goetsch SC, Hawke TJ, Gallardo TD, Richardson JA, Garry DJ. Transcriptional profiling and regulation of the extracellular matrix during muscle regeneration. Physiol Genomics. 2003 Aug 15; [PubMed]
  6. Beck GR, Moran E, Knecht N. Inorganic phosphate regulates multiple genes during osteoblast differentiation, including Nrf2. Exp Cell Res. 2003 Aug 15;288(2):288-300. [PubMed]
  7. Arai M, Yokosuka O, Chiba T, Imazeki F, Kato M, Hashida J, Ueda Y, Sugano S, Hashimoto K, Saisho H, Takiguchi M, Seki N. Gene expression profiling reveals the mechanism and pathophysiology of mouse liver regeneration. J Biol Chem. 2003 Aug 8; 278: 29813-29818. [PubMed][web supplement]
  8. Mahon BD, Wittke A, Weaver V, Cantorna MT. The targets of vitamin D depend on the differentiation and activation status of CD4 positive T cells. J Cell Biochem. 2003 Aug 1;89(5):922-32. [PubMed]
  9. Delgado I, Huang X, Jones S, Zhang L, Hatcher R, Gao B, Zhang P. Dynamic gene expression during the onset of myoblast differentiation in vitro. Genomics. 2003 Aug;82(2):109-21. [