My microarray journal watch - year 2003 Apr-Jun  [ this week | 2004 Oct-Dec | 2004 Jul-Sep | 2004 Apr-Jun | 2004 Jan-Mar | 2003 Oct-Dec | 2003 Jul-Sep | 2003 Apr-Jun | 2003 Jan-Mar | 2002 Jul-Dec | 2002 Jan-Jun | 2001 Jul-Dec | 2001 Jan-Jun | 2000 | 1999 | 1998 | 1997 | 1996 & before ]

General
Human disease studies
   Disease screening, profiling and classification
   Diagnosis, prognosis and clinical applications
   Animal model studies
   In vitro studies
Basic science studies
   Gene product function
   General physiology
   Development & differentiation
   Neurobiology
   Signal transduction
   Human
   Animal
   Plant
   Microbiology
Genome scale studies
   Comparative Genomics
   Network/pathway reconstruction and analysis
Genetic analysis
   ArrayCGH

Pharmacogenomics and pharmacogenetics
Toxicogenomics
Technical development
Other related technical issue; microdissection; linear amplification of RNA (aRNA)
Experimental design, sample size & power
Data analysis
   Oligo design for array manufacturing
   Image analysis
   Normalization
   Pattern recognition, classification & data mining by unsupervised methods
   Pattern recognition, classification & data mining by supervised methods
   Network/pathway reconstruction and analysis
   Statistical significance of analysis
   Software
Database
Tissue microarray
Protein array
Biochip/lab-on-a-chip/micro-Total Analysis System (uTAS)
Cell microarrays
Other array platforms
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General

  1. Brown H. The real value of microarray technology. Lancet Oncol. 2003 Jun;4(6):326. [PubMed]
  2. Carroll A. How to book for microarrays. Nat Genet. 2003 May;34(1):13. [PubMed]
  3. Hardiman G. Microarray technologies 2003 - an overview. Pharmacogenomics. 2003 May;4(3):251-6. [PubMed]

Human disease studies

  1. Mantripragada KK, Buckley PG, Jarbo C, Menzel U, Dumanski JP. Development of NF2 gene specific, strictly sequence defined diagnostic microarray for deletion detection. J Mol Med. 2003 Jun 27 [Epub ahead of print] [PubMed]
  2. Pfeffer U, Noonan D, Albini A. Re: microarray studies challenge theories of metastasis. J Natl Cancer Inst. 2003 Jun 4;95(11):829. [PubMed]
  3. Tabakoff B, Bhave SV, Hoffman PL. Selective breeding, quantitative trait locus analysis, and gene arrays identify candidate genes for complex drug-related behaviors. J Neurosci. 2003 Jun 1;23(11):4491-8. [PubMed]
  4. Hoffman EP, DuBois DC, Hoffman RI, Almon RR. Expression profiling and pharmacogenomics of muscle and muscle disease. Curr Opin Pharmacol. 2003 Jun;3(3):309-16. [PubMed]
  5. Herrera BM, Ebers GC. Progress in deciphering the genetics of multiple sclerosis. Curr Opin Neurol. 2003 Jun;16(3):253-8. [PubMed]
  6. Staege MS, Hattenhorst UE, Neumann UE, Hutter C, Foja S, Burdach S. DNA-microarrays as tools for the identification of tumor specific gene expression profiles: applications in tumor biology, diagnosis and therapy. Klin Padiatr. 2003 May-Jun;215(3):135-9. [PubMed]
  7. Zhu D, Kennerson M, Merory J, Chrast R, Verheijen M, Lemke G, Nicholson G. Refined localization of dominant intermediate Charcot-Marie-Tooth neuropathy and exclusion of seven known candidate genes in the region. Neurogenetics. 2003 May 22 [epub ahead of print] [PubMed]
  8. Carr KM, Bittner M, Trent JM. Gene-expression profiling in human cutaneous melanoma. Oncogene. 2003 May 19;22(20):3076-80. [PubMed]
  9. Fidler IJ, Kripke ML. Genomic analysis of primary tumors does not address the prevalence of metastatic cells in the population. Nat Genet. 2003 May;34(1):23. [PubMed]
  10. Hunter K, Welch DR, Liu ET. Genetic background is an important determinant of metastatic potential. Nat Genet. 2003 May;34(1):23-4. [PubMed]
  11. Ramaswamy S, Ross KN, Lander ES, Golub TR. Reply to "Genomic analysis of primary tumors does not address the prevalence of metastatic cells in the population" and "Genetic background is an important determinant of metastatic potential". Nat Genet. 2003 May;34(1):25. [PubMed]
  12. Dummer R, Urosevic M, Hoek K, Haffner A, Burg G. Exploring primary cutaneous B-cell lymphoma by microarray technology. J Invest Dermatol. 2003 May;120(5):VII-VIII. [PubMed]
  13. Kraft P, Schadt E, Aten J, Horvath S. A Family-Based Test for Correlation between Gene Expression and Trait Values. Am J Hum Genet 2003 May;72(5):1323-30 [PubMed]
  14. Sugars KL, Rubinsztein DC. Transcriptional abnormalities in Huntington disease. Trends Genet. 2003 May;19(5):233-8. [PubMed]
  15. Dobrin SE, Stephan DA. Integrating microarrays into disease-gene identification strategies. Expert Rev Mol Diagn. 2003 May;3(3):375-85. [PubMed]
  16. Sturla LM, Fernandez-Teijeiro A, Pomeroy SL. Application of microarrays to neurological disease. Arch Neurol. 2003 May;60(5):676-82. [PubMed]
  17. Dvornyk V, Recker RR, Deng HW. Gene expression studies of osteoporosis: implications for microarray research. Osteoporos Int. 2003 Apr 29 [epub ahead of print] [PubMed]
  18. Schwaenen C, Wessendorf S, Kestler HA, Dohner H, Lichter P, Bentz M. DNA microarray analysis in malignant lymphomas. Ann Hematol. 2003 Apr 26 [epub ahead of print] [PubMed]
  19. Bunney WE, Bunney BG, Vawter MP, Tomita H, Li J, Evans SJ, Choudary PV, Myers RM, Jones EG, Watson SJ, Akil H. Microarray technology: a review of new strategies to discover candidate vulnerability genes in psychiatric disorders. Am J Psychiatry. 2003 Apr;160(4):657-66. [PubMed]
  20. Ciro M, Bracken AP, Helin K.  Profiling cancer. Curr Opin Cell Biol. 2003 Apr; 15:213-220. [PubMed]
  21. Gregersen PK, Brehrens TW. Fine mapping the phenotype in autoimmune disease: the promise and pitfalls of DNA microarray technologies. Genes Immun. 2003 Apr;4(3):175-6. [PubMed]
  22. Kuo WP, Whipple ME, Jenssen TK, Todd R, Epstein JB, Ohno-Machado L, Sonis ST, Park PJ. Microarrays and clinical dentistry. J Am Dent Assoc. 2003 Apr;134(4):456-62. [PubMed]
  23. Albertson DG. Profiling breast cancer by array CGH. Breast Cancer Res Treat. 2003 Apr;78(3):289-98. [PubMed]
  24. Leiva IM, Emmert-Buck MR, Gillespie JW. Handling of clinical tissue specimens for molecular profiling studies. Curr Issues Mol Biol. 2003 Apr;5(2):27-35. [PubMed]

Disease screening, profiling and classification

  1. Chen Y, Park S, Li Y, Missov E, Hou M, Han X, Hall JL, Miller LW, Bache RJ. Alterations of Gene Expression in Failing Myocardium Following Left Ventricular Assist Device Support. Physiol Genomics. 2003 Jun 24 [Epub ahead of print] [PubMed]
  2. Nowicki MO, Pawlowski P, Fischer T, Hess G, Pawlowski T, Skorski T. Chronic myelogenous leukemia molecular signature. Oncogene. 2003 Jun 19;22(25):3952-63. [PubMed]
  3. Wang PL, Ohura K, Fujii T, Oido-Mori M, Kowashi Y, Kikuchi M, Suetsugu Y, Tanaka J. DNA microarray analysis of human gingival fibroblasts from healthy and inflammatory gingival tissues. Biochem Biophys Res Commun. 2003 Jun 13;305(4):970-3. [PubMed]
  4. Zhu G, Reynolds L, Crnogorac-Jurcevic T, Gillett CE, Dublin EA, Marshall JF, Barnes D, D'Arrigo C, Van Trappen PO, Lemoine NR, Hart IR. Combination of microdissection and microarray analysis to identify gene expression changes between differentially located tumour cells in breast cancer. Oncogene. 2003 Jun 12;22(24):3742-8. [PubMed]
  5. Udtha M, Lee SJ, Alam R, Coombes K, Huff V. Upregulation of c-MYC in WT1-mutant tumors: assessment of WT1 putative transcriptional targets using cDNA microarray expression profiling of genetically defined Wilms' tumors. Oncogene. 2003 Jun 12;22(24):3821-6. [PubMed]
  6. Kemmner W, Roefzaad C, Haensch W, Schlag PM. Glycosyltransferase expression in human colonic tissue examined by oligonucleotide arrays. Biochim Biophys Acta. 2003 Jun 11;1621(3):272-9. [PubMed]
  7. Vasselli JR, Shih JH, Iyengar SR, Maranchie J, Riss J, Worrell R, Torres-Cabala C, Tabios R, Mariotti A, Stearman R, Merino M, Walther MM, Simon R, Klausner RD, Linehan WM. Predicting survival in patients with metastatic kidney cancer by gene-expression profiling in the primary tumor. Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):6958-63. [PubMed][pdf][web supplement]
  8. Lee D, Choi SW, Kim M, Park JH, Kim M, Kim J, Lee IB. Discovery of Differentially Expressed Genes Related to Histological Subtype of Hepatocellular Carcinoma. Biotechnol Prog. 2003 Jun 6;19(3):1011-1015. [PubMed]
  9. Nakamura H, Saji H, Ogata A, Hosaka M, Hagiwara M, Saijo T, Kawasaki N, Kato H. cDNA microarray analysis of gene expression in pathologic stage IA nonsmall cell lung carcinomas. Cancer. 2003 Jun 1;97(11):2798-805. [PubMed]
  10. Aldred MA, Ginn-Pease ME, Morrison CD, Popkie AP, Gimm O, Hoang-Vu C, Krause U, Dralle H, Jhiang SM, Plass C, Eng C. Caveolin-1 and caveolin-2,together with three bone morphogenetic protein-related genes, may encode novel tumor suppressors down-regulated in sporadic follicular thyroid carcinogenesis. Cancer Res. 2003 Jun 1;63(11):2864-71. [PubMed]
  11. Choe G, Horvath S, Cloughesy TF, Crosby K, Seligson D, Palotie A, Inge L, Smith BL, Sawyers CL, Mischel PS. Analysis of the phosphatidylinositol 3'-kinase signaling pathway in glioblastoma patients in vivo. Cancer Res. 2003 Jun 1;63(11):2742-6. [PubMed]
  12. Debernardi S, Lillington DM, Chaplin T, Tomlinson S, Amess J, Rohatiner A, Lister TA, Young BD. Genome-wide analysis of acute myeloid leukemia with normal karyotype reveals a unique pattern of homeobox gene expression distinct from those with translocation-mediated fusion events. Genes Chromosomes Cancer. 2003 Jun;37(2):149-58. [PubMed]
  13. Nielsen K, Birkenkamp-Demtroder K, Ehlers N, Orntoft TF. Identification of Differentially Expressed Genes in Keratoconus Epithelium Analyzed on Microarrays. Invest Ophthalmol Vis Sci. 2003 Jun; 44: 2466-2476. [PubMed]
  14. Pan D, Watson HK, Swigart C, Thomson JG, Honig SC, Narayan D. Microarray Gene Analysis and Expression Profiles of Dupuytren's Contracture. Ann Plast Surg. 2003 Jun;50(6):618-22. [PubMed]
  15. Koike F, Satoh J, Miyake S, Yamamoto T, Kawai M, Kikuchi S, Nomura K, Yokoyama K, Ota K, Kanda T, Fukazawa T, Yamamura T. Microarray analysis identifies interferon beta-regulated genes in multiple sclerosis. J Neuroimmunol. 2003 Jun;139(1-2):109-18. [PubMed]
  16. Friess H, Ding J, Kleeff J, Fenkell L, Rosinski JA, Guweidhi A, Reidhaar-Olson JF, Korc M, Hammer J, Buchler MW. Microarray-based identification of differentially expressed growth- and metastasis-associated genes in pancreatic cancer. Cell Mol Life Sci. 2003 Jun;60(6):1180-99. [PubMed]
  17. Singhal S, Amin KM, Kruklitis R, DeLong P, Friscia ME, Litzky LA, Putt ME, Kaiser LR, Albelda SM. Alterations in cell cycle genes in early stage lung adenocarcinoma identified by expression profiling. Cancer Biol Ther. 2003 May-Jun;2(3):291. [PubMed]
  18. Yim SH, Ward JM, Dragan Y, Yamada A, Scacheri PC, Kimura S, Gonzalez FJ. Microarray analysis using amplified mRNA from laser capture microdissection of microscopic hepatocellular precancerous lesions and frozen hepatocellular carcinomas reveals unique and consistent gene expression profiles. Toxicol Pathol. 2003 May-Jun;31(3):295-303. [PubMed]
  19. Seth A, Kitching R, Landberg G, Xu J, Zubovits J, Burger AM. Gene expression profiling of ductal carcinomas in situ and invasive breast tumors. Anticancer Res. 2003 May-Jun;23(3A):2043-51. [PubMed]
  20. Ye S, Pang H, Gu YY, Hua J, Chen XG, Bao CD, Wang Y, Zhang W, Qian J, Tsao BP, Hahn BH, Chen SL, Rao ZH, Shen N. Protein interaction for an interferon-inducible systemic lupus associated gene, IFIT1. Rheumatology (Oxford). 2003 May 30 [Epub ahead of print] [PubMed]
  21. Aldred MA, Morrison C, Gimm O, Hoang-Vu C, Krause U, Dralle H, Jhiang S, Eng C. Peroxisome proliferator-activated receptor gamma is frequently downregulated in a diversity of sporadic nonmedullary thyroid carcinomas. Oncogene. 2003 May 29;22(22):3412-6. [PubMed]
  22. Kaynak B, von Heydebreck A, Mebus S, Seelow D, Hennig S, Vogel J, Sperling HP, Pregla R, Alexi-Meskishvili V, Hetzer R, Lange PE, Vingron M, Lehrach H, Sperling S. Genome-wide array analysis of normal and malformed human hearts. Circulation. 2003 May 20;107(19):2467-74. [PubMed]
  23. Frederiksen CM, Knudsen S, Laurberg S, ORntoft TF. Classification of Dukes' B and C colorectal cancers using expression arrays. J Cancer Res Clin Oncol. 2003 May 15 [epub ahead of print] [PubMed]
  24. Logsdon CD, Simeone DM, Binkley C, Arumugam T, Greenson JK, Giordano TJ, Misek DE, Hanash S. Molecular profiling of pancreatic adenocarcinoma and chronic pancreatitis identifies multiple genes differentially regulated in pancreatic cancer. Cancer Res. 2003 May 15;63(10):2649-57. [PubMed]
  25. Boussioutas A, Li H, Liu J, Waring P, Lade S, Holloway AJ, Taupin D, Gorringe K, Haviv I, Desmond PV, Bowtell DD. Distinctive patterns of gene expression in premalignant gastric mucosa and gastric cancer. Cancer Res. 2003 May 15;63(10):2569-77. [PubMed]
  26. Iizuka N, Oka M, Yamada-Okabe H, Mori N, Tamesa T, Okada T, Takemoto N, Hashimoto K, Tangoku A, Hamada K, Nakayama H, Miyamoto T, Uchimura S, Hamamoto Y. Differential gene expression in distinct virologic types of hepatocellular carcinoma: association with liver cirrhosis. Oncogene. 2003 May 15;22(19):3007-3014. [PubMed]
  27. Ma XJ, Salunga R, Tuggle JT, Gaudet J, Enright E, McQuary P, Payette T, Pistone M, Stecker K, Zhang BM, Zhou YX, Varnholt H, Smith B, Gadd M, Chatfield E, Kessler J, Baer TM, Erlander MG, Sgroi DC. Gene expression profiles of human breast cancer progression. Proc Natl Acad Sci U S A. 2003 May 13;100(10):5974-9. [PubMed][pdf]
  28. Ramaswamy S, Perou CM. DNA microarrays in breast cancer: the promise of personalised medicine. Lancet. 2003 May 10;361(9369):1576-7. [PubMed]
  29. Huang E, Cheng SH, Dressman H, Pittman J, Tsou MH, Horng CF, Bild A, Iversen ES, Liao M, Chen CM, West M, Nevins JR, Huang AT. Gene expression predictors of breast cancer outcomes. Lancet. 2003 May 10;361(9369):1590-6. [PubMed]
  30. Yagi T, Morimoto A, Eguchi M, Hibi S, Sako M, Ishii E, Mizutani S, Imashuku S, Ohki M, Ichikawa H. Identification of a gene expression signature associated with prognosis of pediatric AML. Blood. 2003 May 8 [epub ahead of print] [PubMed]
  31. Hotakainen K, Ljungberg B, Haglund C, Nordling S, Paju A, Stenman UH. Expression of the free beta-subunit of human chorionic gonadotropin in renal cell carcinoma: Prognostic study on tissue and serum. Int J Cancer. 2003 May 1;104(5):631-5. [PubMed]
  32. Hoque MO, Lee CC, Cairns P, Schoenberg M, Sidransky D. Genome-Wide Genetic Characterization of Bladder Cancer: A Comparison of High-Density Single-Nucleotide Polymorphism Arrays and PCR-based Microsatellite Analysis. Cancer Res. 2003 May 1;63(9):2216-22. [PubMed]
  33. Segal NH, Pavlidis P, Noble WS, Antonescu CR, Viale A, Wesley UV, Busam K, Gallardo H, DeSantis D, Brennan MF, Cordon-Cardo C, Wolchok JD, Houghton AN. Classification of clear-cell sarcoma as a subtype of melanoma by genomic profiling. J Clin Oncol. 2003 May 1;21(9):1775-81. [PubMed]
  34. Masuda H, Takahashi Y, Asai S, Takayama T. Distinct gene expression of osteopontin in patients with ulcerative colitis. J Surg Res. 2003 May 1;111(1):85-90. [PubMed]
  35. Sharma R. et al., Transcriptional gene expression profile of human esophageal squamous cell carcinoma. Genomics. 2003 May; 81: 481-488. [PubMed]
  36. Mao R. et al., Global up-regulation of chromosome 21 gene expression in the developing down syndrome brain. Genomics. 2003 May; 81: 457-467. [PubMed]
  37. Mycko MP, Papoian R, Boschert U, Raine CS, Selmaj KW. cDNA microarray analysis in multiple sclerosis lesions: detection of genes associated with disease activity. Brain. 2003 May;126(Pt 5):1048-57. [PubMed]
  38. Storz MN, Van De Rijn M, Kim YH, Mraz-Gernhard S, Hoppe RT, Kohler S. Gene expression profiles of cutaneous B cell lymphoma. J Invest Dermatol. 2003 May;120(5):865-70. [PubMed]
  39. Scherer A, Krause A, Walker JR, Korn A, Niese D, Raulf F. Early prognosis of the development of renal chronic allograft rejection by gene expression profiling of human protocol biopsies. Transplantation. 2003 Apr 27;75(8):1323-1330. [PubMed]
  40. Hackett NR, Heguy A, Harvey BG, O'Connor TP, Luettich K, Flieder DB, Kaplan R, Crystal RG. Variability of Antioxidant-related Gene Expression in the Airway Epithelium of Cigarette Smokers. Am J Respir Cell Mol Biol. 2003 Apr 17 [epub ahead of print] [PubMed]
  41. Mischel PS, Shai R, Shi T, Horvath S, Lu KV, Choe G, Seligson D, Kremen TJ, Palotie A, Liau LM, Cloughesy TF, Nelson SF. Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene. 2003 Apr 17;22(15):2361-73. [PubMed]
  42. Sanoudou D, Haslett JN, Kho AT, Guo S, Gazda HT, Greenberg SA, Lidov HG, Kohane IS, Kunkel LM, Beggs AH. Expression profiling reveals altered satellite cell numbers and glycolytic enzyme transcription in nemaline myopathy muscle. Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4666-4671. [PubMed][pdf][web supplement]
  43. Creighton C, Hanash S, Beer D. Gene expression patterns define pathways correlated with loss of differentiation in lung adenocarcinomas. FEBS Lett. 2003 Apr 10;540(1-3):167-70. [PubMed]
  44. Tracey L, Villuendas R, Dotor AM, Spiteri I, Ortiz P, Garcia JF, Rodriguez-Peralto JL, Lawler M, Piris MA. Mycosis fungoides show concurrent deregulation of multiple genes involved in the TNF signaling pathway: an expression profile study. Blood. 2003 Apr 10 [epub ahead of print] [PubMed]
  45. Kikuchi T, Daigo Y, Katagiri T, Tsunoda T, Okada K, Kakiuchi S, Zembutsu H, Furukawa Y, Kawamura M, Kobayashi K, Imai K, Nakamura Y. Expression profiles of non-small cell lung cancers on cDNA microarrays: Identification of genes for prediction of lymph-node metastasis and sensitivity to anti-cancer drugs. Oncogene. 2003 Apr 10;22(14):2192-205. [PubMed]
  46. Gelmann EP, Bowen C, Bubendorf L. Expression of NKX3.1 in normal and malignant tissues. Prostate. 2003 Apr 7;55(2):111-7. [PubMed]
  47. Nakamura T, Scorilas A, Stephan C, Yousef GM, Kristiansen G, Jung K, Diamandis EP. Quantitative analysis of macrophage inhibitory cytokine-1 (MIC-1) gene expression in human prostatic tissues. Br J Cancer. 2003 Apr 7;88(7):1101-1104. [PubMed]
  48. Creighton C, Hanash S. Expression of matrix metalloproteinase 9 (MMP-9/gelatinase B) in adenocarcinomas strongly correlated with expression of immune response genes. In Silico Biol. 2003 Apr 7 [Epub ahead of print] [PubMed]
  49. Nutt CL, Mani DR, Betensky RA, Tamayo P, Cairncross JG, Ladd C, Pohl U, Hartmann C, McLaughlin ME, Batchelor TT, Black PM, Von Deimling A, Pomeroy SL, Golub TR, Louis DN. Gene Expression-based Classification of Malignant Gliomas Correlates Better with Survival than Histological Classification. Cancer Res. 2003 Apr 1;63(7):1602-1607. [PubMed]
  50. Kaplan R, Luettich K, Heguy A, Hackett NR, Harvey BG, Crystal RG. Monoallelic Up-Regulation of the Imprinted H19 Gene in Airway Epithelium of Phenotypically Normal Cigarette Smokers. Cancer Res. 2003 Apr 1;63(7):1475-1482. [PubMed]
  51. Richardsen E, Ukkonen T, Bjornsen T, Mortensen E, Egevad L, Busch C. Overexpression of IGBFB2 is a marker for malignant transformation in prostate epithelium. Virchows Arch. 2003 Apr 1 [epub ahead of print] [PubMed]
  52. Kaplan R, Luettich K, Heguy A, Hackett NR, Harvey BG, Crystal RG. Monoallelic up-regulation of the imprinted H19 gene in airway epithelium of phenotypically normal cigarette smokers. Cancer Res. 2003 Apr 1;63(7):1475-82. [PubMed]
  53. Guikema JE, Hovenga S, Vellenga E, Conradie JJ, Abdulahad WH, Bekkema R, Smit JW, Zhan F, Shaughnessy J, Bos NA. CD27 is heterogeneously expressed in multiple myeloma: low CD27 expression in patients with high-risk disease. Br J Haematol. 2003 Apr;121(1):36-43. [PubMed]
  54. Hwang D, Alevizos I, Schmitt WA, Misra J, Ohyama H, Todd R, Mahadevappa M, Warrington JA, Stephanopoulos G, Wong DT, Stephanopoulos G. Genomic dissection for characterization of cancerous oral epithelium tissues using transcription profiling. Oral Oncol. 2003 Apr;39(3):259-68. [PubMed]
  55. Leethanakul C, Knezevic V, Patel V, Amornphimoltham P, Gillespie J, Shillitoe EJ, Emko P, Park MH, Emmert-Buck MR, Strausberg RL, Krizman DB, Gutkind JS. Gene discovery in oral squamous cell carcinoma through the Head and Neck Cancer Genome Anatomy Project: confirmation by microarray analysis. Oral Oncol. 2003 Apr;39(3):248-58. [PubMed]
  56. Chen Z, Fan Z, McNeal JE, Nolley R, Caldwell MC, Mahadevappa M, Zhang Z, Warrington JA, Stamey TA. Hepsin and Maspin are Inversely Expressed in Laser Capture Microdissectioned Prostate Cancer. J Urol. 2003 Apr;169(4):1316-1319. [PubMed]
  57. Visapaa H, Bui M, Huang Y, Seligson D, Tsai H, Pantuck A, Figlin R, Rao JY, Belldegrun A, Horvath S, Palotie A. Correlation of Ki-67 and gelsolin expression to clinical outcome in renal clear cell carcinoma. Urology. 2003 Apr;61(4):845-850. [PubMed]
  58. Halvorsen OJ, Haukaas SA, Akslen LA. Combined Loss of PTEN and p27 Expression Is Associated with Tumor Cell Proliferation by Ki-67 and Increased Risk of Recurrent Disease in Localized Prostate Cancer. Clin Cancer Res. 2003 Apr;9(4):1474-9. [PubMed]
  59. Tan ZJ, Hu XG, Cao GS, Tang Y. Analysis of gene expression profile of pancreatic carcinoma using cDNA microarray. World J Gastroenterol. 2003 Apr;9(4):818-23. [PubMed]
  60. Van Der Pouw Kraan TC, Van Gaalen FA, Huizinga TW, Pieterman E, Breedveld FC, Verweij CL. Discovery of distinctive gene expression profiles in rheumatoid synovium using cDNA microarray technology: evidence for the existence of multiple pathways of tissue destruction and repair. Genes Immun. 2003 Apr;4(3):187-96. [PubMed]
  61. Han GM, Chen SL, Shen N, Ye S, Bao CD, Gu YY. Analysis of gene expression profiles in human systemic lupus erythematosus using oligonucleotide microarray. Genes Immun. 2003 Apr;4(3):177-186. [PubMed]
  62. Barsky SH. Myoepithelial mRNA expression profiling reveals a common tumor-suppressor phenotype. Exp Mol Pathol. 2003 Apr;74(2):113-22. [PubMed]

Diagnosis, prognosis and clinical applications

  1. Napoli C, Lerman LO, Sica V, Lerman A, Tajana G, de Nigris F. Microarray analysis: a novel research tool for cardiovascular scientists and physicians. Heart. 2003 Jun;89(6):597-604. [PubMed]
  2. Best CJ, Leiva IM, Chuaqui RF, Gillespie JW, Duray PH, Murgai M, Zhao Y, Simon R, Kang JJ, Green JE, Bostwick DG, Linehan WM, Emmert-Buck MR.    Molecular differentiation of high- and moderate-grade human prostate cancer by cDNA microarray analysis. Diagn Mol Pathol. 2003 Jun;12(2):63-70. [PubMed]
  3. Napoli C, Lerman LO, Sica V, Lerman A, Tajana G, de Nigris F. Microarray analysis: a novel research tool for cardiovascular scientists and physicians. Heart. 2003 Jun;89(6):597-604. [PubMed]
  4. Ramaswamy S, Perou CM. DNA microarrays in breast cancer: the promise of personalised medicine. Lancet. 2003 May 10;361(9369):1576-7. [PubMed]
  5. Huang E, Cheng SH, Dressman H, Pittman J, Tsou MH, Horng CF, Bild A, Iversen ES, Liao M, Chen CM, West M, Nevins JR, Huang AT. Gene expression predictors of breast cancer outcomes. Lancet. 2003 May 10;361(9369):1590-6. [PubMed]
  6. Wildhaber BE, Yang H, Coran AG, Teitelbaum DH. Gene alteration of intestinal intraepithelial lymphocytes in response to massive small bowel resection. Pediatr Surg Int. 2003 May 1 [epub ahead of print] [PubMed] 
  7. Staudt LM. Molecular diagnosis of the hematologic cancers. N Engl J Med. 2003 May 1;348(18):1777-85. [PubMed]
  8. Sevenet N, Cussenot O. DNA microarrays in clinical practice: past, present, and future. Clin Exp Med. 2003 May;3(1):1-3. [PubMed]
  9. Geschwind DH. DNA microarrays: translation of the genome from laboratory to clinic. Lancet Neurol. 2003 May;2(5):275-82. [PubMed]
  10. Mariadason JM, Augenlicht LH, Arango D. Microarray analysis in the clinical management of cancer. Hematol Oncol Clin North Am. 2003 Apr;17(2):377-87. [PubMed]
  11. Gordon GJ, Jensen RV, Hsiao LL, Gullans SR, Blumenstock JE, Richards WG, Jaklitsch MT, Sugarbaker DJ, Bueno R. Using gene expression ratios to predict outcome among patients with mesothelioma. J Natl Cancer Inst. 2003 Apr 16;95(8):598-605. [PubMed]
  12. Branca M. GENETICS AND MEDICINE: Putting Gene Arrays to the Test. Science. 2003 Apr 11;300(5617):238. [PubMed]
  13. Bristow MR. Microarray measurements of gene expression before and after left ventricular assist device placement. J Am Coll Cardiol. 2003 Apr 2;41(7):1107-8. [PubMed]
  14. Blaxall BC, Tschannen-Moran BM, Milano CA, Koch WJ. Differential gene expression and genomic patient stratification following left ventricular assist device support. J Am Coll Cardiol. 2003 Apr 2;41(7):1096-106. [PubMed]
  15. Nutt CL, Mani DR, Betensky RA, Tamayo P, Cairncross JG, Ladd C, Pohl U, Hartmann C, McLaughlin ME, Batchelor TT, Black PM, Von Deimling A, Pomeroy SL, Golub TR, Louis DN. Gene Expression-based Classification of Malignant Gliomas Correlates Better with Survival than Histological Classification. Cancer Res. 2003 Apr 1;63(7):1602-1607. [PubMed]
  16. Man K, Lo CM, Lee TK, Li XL, Ng IO, Fan ST. Intragraft gene expression profiles by cDNA microarray in small-for-size liver grafts. Liver Transpl. 2003 Apr;9(4):425-32. [PubMed]
  17. Kawaguchi K, Kaneko S, Honda M, Kawai HF, Shirota Y, Kobayashi K. Detection of hepatitis B virus DNA in sera from patients with chronic hepatitis B virus infection by DNA microarray method. J Clin Microbiol. 2003 Apr;41(4):1701-4. [PubMed]
  18. Chua MS, Sarwal MM. Microarrays: new tools for transplantation research. Pediatr Nephrol. 2003 Apr;18(4):319-27. [PubMed]
  19. Ciro M, Bracken AP, Helin K. Profiling cancer. Curr Opin Cell Biol. 2003 Apr;15(2):213-20. [PubMed]
  20. Mariadason JM, Augenlicht LH, Arango D. Microarray analysis in the clinical management of cancer. Hematol Oncol Clin North Am. 2003 Apr;17(2):377-87. [PubMed]
  21. Ferrari M, Stenirri S, Bonini P, Cremonesi L. Molecular diagnostics by microelectronic microchips. Clin Chem Lab Med. 2003 Apr;41(4):462-7. [PubMed]

Animal model studies

  1. Rodrigo MC, Martin DS, Eyster KM. Estrogen Decreases Biglycan mRNA Expression in Resistance Blood Vessels. Am J Physiol Regul Integr Comp Physiol. 2003 Jun 26 [Epub ahead of print] [PubMed]
  2. Ji B, Chen XQ, Misek DE, Kuick R, Hanash S, Ernst S, Najarian R, Logsdon CD. Pancreatic gene expression during the initiation of acute pancreatitis: identification of EGR-1 as a key regulator. Physiol Genomics. 2003 Jun 24;14(1):59-72. [PubMed]
  3. Liu W, Seto J, Sibille E, Toth M. The RNA Binding Domain of Jerky Consists of Tandemly Arranged Helix-Turn-Helix/Homeodomain-Like Motifs and Binds Specific Sets of mRNAs. Mol Cell Biol. 2003 Jun 15;23(12):4083-4093. [PubMed]
  4. Dickey CA, Loring JF, Montgomery J, Gordon MN, Eastman PS, Morgan D. Selectively reduced expression of synaptic plasticity-related genes in amyloid precursor protein + presenilin-1 transgenic mice. J Neurosci. 2003 Jun 15;23(12):5219-26. [PubMed]
  5. Hammel JM, Caldarone CA, Van Natta TL, Wang LX, Welke KF, Li W, Niles S, Barner E, Scholz TD, Behrendt DM, Segar JL. Myocardial apoptosis after cardioplegic arrest in the neonatal lamb. J Thorac Cardiovasc Surg. 2003 Jun;125(6):1268-75. [PubMed]
  6. Vercelli D. Arginase: marker, effector, or candidate gene for asthma? J Clin Invest. 2003 Jun;111(12):1815-7. [PubMed]
  7. Zimmermann N, King NE, Laporte J, Yang M, Mishra A, Pope SM, Muntel EE, Witte DP, Pegg AA, Foster PS, Hamid Q, Rothenberg ME. Dissection of experimental asthma with DNA microarray analysis identifies arginase in asthma pathogenesis. J Clin Invest. 2003 Jun 15;111(12):1863-1874. [PubMed]
  8. Miller ED, Smith JA, Lichtinger M, Wang L, Su L. Activation of the signal transducer and activator of transcription 1 signaling pathway in thymocytes from HIV-1-infected human thymus. AIDS. 2003 Jun 13;17(9):1269-77. [PubMed]
  9. Daigo Y, Takayama I, Ponder BA, Caldas C, Ward SM, Sanders KM, Fujino MA. Differential gene expression in the murine gastric fundus lacking interstitial cells of Cajal. BMC Gastroenterol. 2003 Jun 10 [Epub ahead of print] [PubMed]
  10. Schraets D, Lehmann T, Dingermann T, Marschalek R. MLL-mediated transcriptional gene regulation investigated by gene expression profiling. Oncogene. 2003 Jun 5;22(23):3655-68. [PubMed]
  11. Prows DR, McDowell SA, Aronow BJ, Leikauf GD. Genetic susceptibility to nickel-induced acute lung injury. Chemosphere. 2003 Jun;51(10):1139-48. [PubMed]
  12. Roberts ES, Zandonatti MA, Watry DD, Madden LJ, Henriksen SJ, Taffe MA, Fox HS. Induction of Pathogenic Sets of Genes in Macrophages and Neurons in NeuroAIDS. Am J Pathol. 2003 Jun;162(6):2041-57. [PubMed]
  13. Vercelli D. Arginase: marker, effector, or candidate gene for asthma? J Clin Invest. 2003 Jun;111(12):1815-7. [PubMed]
  14. Wang D, Oparil S, Feng JA, Li P, Perry G, Chen LB, Dai M, John SW, Chen YF. Effects of Pressure Overload on Extracellular Matrix Expression in the Heart of the Atrial Natriuretic Peptide-Null Mouse. Hypertension. 2003 May 19 [epub ahead of print] [PubMed]
  15. Wood JR, Nelson VL, Ho C, Jansen E, Wang CY, Urbanek M, McAllister JM, Mosselman S, Strauss JF 3rd. The molecular phenotype of polycystic ovary syndrome (PCOS) Theca cells and new candidate PCOS genes defined by microarray analysis. J Biol Chem. 2003 May 6 [epub ahead of print] [PubMed]
  16. Supavekin S, Zhang W, Kucherlapati R, Kaskel FJ, Moore LC, Devarajan P. Differential gene expression following early renal ischemia/reperfusion. Kidney Int. 2003 May;63(5):1714-1724. [PubMed]
  17. Ding H, Shi GG, Yu X, Yu JP, Huang JA. Modulation of GdCl(3) and Angelica Sinensis polysaccharides on differentially expressed genes in liver of hepatic immunological injury mice by cDNA microarray. World J Gastroenterol. 2003 May;9(5):1072-6. [PubMed]
  18. Davis DP, Inoue S, Kelly PJ, Patel PM. A novel approach to oligonucleotide microarray analysis to identify candidate genes for neuronal ischemic preconditioning. Acad Emerg Med. 2003 May;10(5):481. [PubMed]
  19. Yoshimura N, Kikuchi T, Kuroiwa S, Gaun S. Differential temporal and spatial expression of immediate early genes in retinal neurons after ischemia-reperfusion injury. Invest Ophthalmol Vis Sci. 2003 May;44(5):2211-20. [PubMed]
  20. Muckenthaler M, Roy CN, Custodio AO, Minana B, DeGraaf J, Montross LK, Andrews NC, Hentze MW. Regulatory defects in liver and intestine implicate abnormal hepcidin and Cybrd1 expression in mouse hemochromatosis. Nat Genet 2003 May;34(1):102-7 [PubMed]
  21. Lau KM, Tam NN, Thompson C, Cheng RY, Leung YK, Ho SM. Age-associated changes in histology and gene-expression profile in the rat ventral prostate. Lab Invest. 2003 May;83(5):743-57. [PubMed]
  22. Kakiuchi S, Daigo Y, Tsunoda T, Yano S, Sone S, Nakamura Y. Genome-Wide Analysis of Organ-Preferential Metastasis of Human Small Cell Lung Cancer in Mice. Mol Cancer Res. 2003 May;1(7):485-499. [PubMed]
  23. Abe M, Yamashita S, Kuramoto T, Hirayama Y, Tsukamoto T, Ohta T, Tatematsu M, Ohki M, Takato T, Sugimura T, Ushijima T. Global expression analysis of N-methyl-N'-nitro-N-nitrosoguanidine-induced rat stomach carcinomas using oligonucleotide microarrays. Carcinogenesis. 2003 May;24(5):861-867. [PubMed]
  24. Lau KM, Tam NN, Thompson C, Cheng RY, Leung YK, Ho SM. Age-associated changes in histology and gene-expression profile in the rat ventral prostate. Lab Invest. 2003 May;83(5):743-57. [PubMed]
  25. Summan M, McKinstry M, Warren GL, Hulderman T, Mishra D, Brumbaugh K, Luster MI, Simeonova PP. Inflammatory mediators and skeletal muscle injury: a DNA microarray analysis. J Interferon Cytokine Res. 2003 May;23(5):237-45. [PubMed]
  26. Min W, Lillehoj HS, Kim S, Zhu JJ, Beard H, Alkharouf N, Matthews BF. Profiling local gene expression changes associated with Eimeria maxima and Eimeria acervulina using cDNA microarray. Appl Microbiol Biotechnol. 2003 Apr 24 [epub ahead of print]  [PubMed]
  27. Csiszar A, Ungvari Z, Koller A, Edwards JG, Kaley G. Aging-induced proinflammatory shift in cytokine expression profile in rat coronary arteries. FASEB J. 2003 Apr 22 [epub ahead of print] [PubMed]
  28. Ji B, Chen XQ, Misek DE, Kuick R, Hanash S, Ernst S, Najarian R, Logsdon CD. Pancreatic Gene Expression during the Initiation of Acute Pancreatitis: Identification of EGR-1 as a Key Regulator. Physiol Genomics. 2003 Apr 22 [epub ahead of print] [PubMed]
  29. Ton C, Stamatiou D, Liew CC. Gene expression profile of zebrafish exposed to hypoxia during development. Physiol Genomics. 2003 Apr 16;13(2):97-106. [PubMed][web supplement]
  30. Mitsui G, Mitsui K, Hirano T, Ohara O, Kato M, Niwano Y. Kinetic profiles of sequential gene expressions for chemokines in mice with contact hypersensitivity. Immunol Lett. 2003 Apr 3;86(2):191-7. [PubMed]
  31. Rall JM, Matzilevich DA, Dash PK. Comparative analysis of mRNA levels in the frontal cortex and the hippocampus in the basal state and in response to experimental brain injury. Neuropathol Appl Neurobiol. 2003 Apr;29(2):118-31. [PubMed]
  32. Yokota C, Inoue H, Kuge Y, Abumiya T, Tagaya M, Hasegawa Y, Ejima N, Tamaki N, Minematsu K. Cyclooxygenase-2 Expression Associated With Spreading Depression in a Primate Model. J Cereb Blood Flow Metab. 2003 Apr;23(4):395-398. [PubMed]
  33. Mandel S, Weinreb O, Youdim MB. Using cDNA microarray to assess Parkinson's disease models and the effects of neuroprotective drugs. Trends Pharmacol Sci. 2003 Apr; 24:184-191. [PubMed]
  34. Iida M, Anna CH, Hartis J, Bruno M, Wetmore B, Dubin JR, Sieber S, Bennett L, Cunningham ML, Paules RS, Tomer KB, Houle CD, Merrick AB, Sills RC, Devereux TR. Changes in global gene and protein expression during early mouse liver carcinogenesis induced by non-genotoxic model carcinogens oxazepam and Wyeth-14,643. Carcinogenesis. 2003 Apr;24(4):757-770. [PubMed] 

In vitro studies

  1. Yoshinaga K, Inoue H, Tanaka F, Mimori K, Utsunomiya T, Mori M. Platelet-derived endothelial cell growth factor mediates rho-associated coiled-coil domain kinase messenger RNA expression and promotes cell motility. Ann Surg Oncol. 2003 Jun-Jul;10(5):582-7. [PubMed]
  2. Kong X, San Juan H, Kumar M, Behera AK, Mohapatra A, Hellermann GR, Mane S, Lockey RF, Mohapatra SS. Respiratory syncytial virus infection activates STAT signaling in human epithelial cells. Biochem Biophys Res Commun. 2003 Jun 27;306(2):616-22. [PubMed]
  3. Dailey L, Laplantine E, Priore R, Basilico C. A network of transcriptional and signaling events is activated by FGF to induce chondrocyte growth arrest and differentiation. J Cell Biol. 2003 Jun 23;161(6):1053-1066. [PubMed]
  4. Natarajan K, Rajala MS, Chodosh J. Corneal IL-8 Expression Following Adenovirus Infection Is Mediated by c-Src Activation in Human Corneal Fibroblasts. J Immunol. 2003 Jun 15;170(12):6234-43. [PubMed]
  5. Mirza A, Wu Q, Wang L, McClanahan T, Bishop WR, Gheyas F, Ding W, Hutchins B, Hockenberry T, Kirschmeier P, Greene JR, Liu S. Global transcriptional program of p53 target genes during the process of apoptosis and cell cycle progression. Oncogene. 2003 Jun 5;22(23):3645-54. [PubMed]
  6. Yoshimura A, Gemma A, Hosoya Y, Komaki E, Hosomi Y, Okano T, Takenaka K, Matuda K, Seike M, Uematsu K, Hibino S, Shibuya M, Yamada T, Hirohashi S, Kudoh S. Increased expression of the LGALS3 (Galectin 3) gene in human non-small-cell lung cancer. Genes Chromosomes Cancer. 2003 Jun;37(2):159-64. [PubMed]
  7. Brooks CS, Hefty PS, Jolliff SE, Akins DR. Global Analysis of Borrelia burgdorferi Genes Regulated by Mammalian Host-Specific Signals. Infect Immun. 2003 Jun;71(6):3371-83. [PubMed]
  8. Saxena A, Worthey EA, Yan S, Leland A, Stuart KD, Myler PJ. Evaluation of differential gene expression in Leishmania major Friedlin procyclics and metacyclics using DNA microarray analysis. Mol Biochem Parasitol. 2003 Jun;129(1):103-14. [PubMed]
  9. Holterhus PM. et al., Differential gene-expression patterns in genital fibroblasts of normal males and 46,XY females with androgen insensitivity syndrome: evidence for early programming involving the androgen receptor. Genome Biol 2003 Jun; [PubMed]
  10. Nielsen K, Birkenkamp-Demtroder K, Ehlers N, Orntoft TF. Identification of differentially expressed genes in keratoconus epithelium analyzed on microarrays. Invest Ophthalmol Vis Sci. 2003 Jun;44(6):2466-76. [PubMed]
  11. Abbott RT, Tripp S, Perkins SL, Elenitoba-Johnson KS, Lim MS. Analysis of the PI-3-Kinase-PTEN-AKT Pathway in Human Lymphoma and Leukemia Using a Cell Line Microarray. Mod Pathol. 2003 Jun;16(6):607-12. [PubMed]
  12. Otte JM, Rosenberg IM, Podolsky DK. Intestinal myofibroblasts in innate immune responses of the intestine. Gastroenterology. 2003 Jun;124(7):1866-78. [PubMed]
  13. Ren Q, Robertson SJ, Howe D, Barrows LF, Heinzen RA. Comparative DNA Microarray Analysis of Host Cell Transcriptional Responses to Infection by Coxiella burnetii or Chlamydia trachomatis. Ann N Y Acad Sci. 2003 Jun;990:701-713. [PubMed]
  14. Tanaka H, Hata F, Nishimori H, Honmou O, Yasoshima T, Nomura H, Ohno K, Hirai I, Kamiguchi K, Isomura H, Hirohashi Y, Denno R, Sato N, Hirata K. Differential gene expression screening between parental and highly metastatic pancreatic cancer variants using a DNA microarray. J Exp Clin Cancer Res. 2003 Jun;22(2):307-13. [PubMed]
  15. Baptista MJ, O'Farrell C, Hardy J, Cookson MR. Microarray analysis reveals induction of heat shock proteins mRNAs by the torsion dystonia protein, TorsinA. Neurosci Lett. 2003 May 29;343(1):5-8. [PubMed]
  16. Chovolou Y, Waetjen W, Kampkoetter A, Kahl R. Resistance to TNF-alpha induced apoptosis in rat hepatoma cells expressing TNF-alpha is linked to low antioxidant enzyme expression. J Biol Chem. 2003 May 29 [Epub ahead of print] [PubMed]
  17. Zhang Y, Jamaluddin M, Wang S, Tian B, Garofalo RP, Casola A, Brasier AR. Ribavirin Treatment Up-Regulates Antiviral Gene Expression via the Interferon-Stimulated Response Element in Respiratory Syncytial Virus-Infected Epithelial Cells. J Virol. 2003 May 15;77(10):5933-47. [PubMed]
  18. Dazard JE, Gal H, Amariglio N, Rechavi G, Domany E, Givol D. Genome-wide comparison of human keratinocyte and squamous cell carcinoma responses to UVB irradiation: implications for skin and epithelial cancer. Oncogene. 2003 May 15;22(19):2993-3006. [PubMed]
  19. Schlingemann J, Hess J, Wrobel G, Breitenbach U, Gebhardt C, Steinlein P, Kramer H, Furstenberger G, Hahn M, Angel P, Lichter P. Profile of gene expression induced by the tumour promotor TPA in murine epithelial cells. Int J Cancer. 2003 May 10;104(6):699-708. [PubMed]
  20. Mackay A, Jones C, Dexter T, Silva RL, Bulmer K, Jones A, Simpson P, Harris RA, Jat PS, Neville AM, Reis LF, Lakhani SR, O'Hare MJ. cDNA microarray analysis of genes associated with ERBB2 (HER2/neu) overexpression in human mammary luminal epithelial cells. Oncogene. 2003 May 1;22(17):2680-8. [PubMed]
  21. Looijenga LH, Stoop H, De Leeuw HP, De Gouveia Brazao CA, Gillis AJ, Van Roozendaal KE, Van Zoelen EJ, Weber RF, Wolffenbuttel KP, Van Dekken H, Honecker F, Bokemeyer C, Perlman EJ, Schneider DT, Kononen J, Sauter G, Oosterhuis JW. POU5F1 (OCT3/4) Identifies Cells with Pluripotent Potential in Human Germ Cell Tumors. Cancer Res. 2003 May 1;63(9):2244-50. [PubMed]
  22. Singh S, Sadacharan S, Su S, Belldegrun A, Persad S, Singh G. Overexpression of Vimentin: Role in the Invasive Phenotype in an Androgen-independent Model of Prostate Cancer. Cancer Res. 2003 May 1;63(9):2306-11. [PubMed]
  23. Shi H, Wei SH, Leu YW, Rahmatpanah F, Liu JC, Yan PS, Nephew KP, Huang TH. Triple analysis of the cancer epigenome: an integrated microarray system for assessing gene expression, DNA methylation, and histone acetylation. Cancer Res. 2003 May 1;63(9):2164-71. [PubMed]
  24. Thompson LJ, Merrell DS, Neilan BA, Mitchell H, Lee A, Falkow S. Gene Expression Profiling of Helicobacter pylori Reveals a Growth-Phase-Dependent Switch in Virulence Gene Expression. Infect Immun. 2003 May;71(5):2643-2655. [PubMed]
  25. Fitzgerald JR, Reid SD, Ruotsalainen E, Tripp TJ, Liu M, Cole R, Kuusela P, Schlievert PM, Jarvinen A, Musser JM. Genome Diversification in Staphylococcus aureus: Molecular Evolution of a Highly Variable Chromosomal Region Encoding the Staphylococcal Exotoxin-Like Family of Proteins. Infect Immun. 2003 May;71(5):2827-2838. [PubMed]
  26. Palena C, Schlom J, Tsang KY. Differential Gene Expression Profiles in a Human T-cell Line Stimulated with a Tumor-associated Self-peptide versus an Enhancer Agonist Peptide. Clin Cancer Res. 2003 May;9(5):1616-27. [PubMed]
  27. Goswami S, Sheets NL, Zavadil J, Chauhan BK, Bottinger EP, Reddy VN, Kantorow M, Cvekl A. Spectrum and range of oxidative stress responses of human lens epithelial cells to H2O2 insult. Invest Ophthalmol Vis Sci. 2003 May;44(5):2084-93. [PubMed]
  28. Lo AK, Liu Y, Wang XH, Huang DP, Yuen PW, Wong YC, Tsao GS. Alterations of biologic properties and gene expression in nasopharyngeal epithelial cells by the Epstein-Barr virus-encoded latent membrane protein 1. Lab Invest. 2003 May;83(5):697-709. [PubMed]
  29. Guan H, Smirnov DA, Ricciardi RP. Identification of genes associated with adenovirus 12 tumorigenesis by microarray. Virology. 2003 Apr 25;309(1):114-24. [PubMed]
  30. Lindvall C, Hou M, Komurasaki T, Zheng C, Henriksson M, Sedivy JM, Bjorkholm M, Teh BT, Nordenskjold M, Xu D. Molecular Characterization of Human Telomerase Reverse Transcriptase-immortalized Human Fibroblasts by Gene Expression Profiling: Activation of the Epiregulin Gene. Cancer Res. 2003 Apr 15;63(8):1743-7. [PubMed]
  31. Ahren IL, Eriksson E, Egesten A, Riesbeck K. Non-typeable Haemophilus influenzae activates human eosinophils through {beta}-glucan receptors. Am J Respir Cell Mol Biol. 2003 Apr 14 [epub ahead of print] [PubMed]
  32. Freedland SJ, Seligson DB, Liu AY, Pantuck AJ, Paik SH, Horvath S, Wieder JA, Zisman A, Nguyen D, Tso CL, Palotie AV, Belldegrun AS. Loss of CD10 (neutral endopeptidase) is a frequent and early event in human prostate cancer. Prostate. 2003 Apr 1;55(1):71-80. [PubMed]
  33. An HJ, Cho NH, Lee SY, Kim IH, Lee C, Kim SJ, Mun MS, Kim SH, Jeong JK. Correlation of cervical carcinoma and precancerous lesions with human papillomavirus (HPV) genotypes detected with the HPV DNA chip microarray method. Cancer. 2003 Apr 1;97(7):1672-80. [PubMed]
  34. Rogers PD, Thornton J, Barker KS, McDaniel DO, Sacks GS, Swiatlo E, McDaniel LS. Pneumolysin-Dependent and -Independent Gene Expression Identified by cDNA Microarray Analysis of THP-1 Human Mononuclear Cells Stimulated by Streptococcus pneumoniae. Infect Immun. 2003 Apr;71(4):2087-2094. [PubMed]
  35. Amundson SA, Lee RA, Koch-Paiz CA, Bittner ML, Meltzer P, Trent JM, Fornace AJ Jr. Differential Responses of Stress Genes to Low Dose-Rate gamma Irradiation. Mol Cancer Res. 2003 Apr;1(6):445-52. [PubMed]
  36. Sanchez-Carbayo M, Belbin TJ, Scotlandi K, Prystowsky M, Baldini N, Childs G, Cordon-Cardo C. Expression profiling of osteosarcoma cells transfected with MDR1 and NEO genes: regulation of cell adhesion, apoptosis, and tumor suppression-related genes. Lab Invest. 2003 Apr;83(4):507-17. [PubMed]
  37. Moisan S, Demers M, Mercier J, Magnaldo T, Potworowski EF, St-Pierre Y. Upregulation of galectin-7 in murine lymphoma cells is associated with progression toward an aggressive phenotype. Leukemia. 2003 Apr;17(4):751-9. [PubMed]

Basic science studies

  1. Chang HC, Tsai JH, Leon Guo Y, Huang YH, Tsai HN, Tsai PC, Huang W. Differential UVC-induced gadd45 gene expression in xeroderma pigmentosum cells. Biochem Biophys Res Commun. 2003 Jun 13;305(4):1109-15. [PubMed]
  2. Toyoda N, Nagai S, Terashima Y, Motomura K, Haino M, Hashimoto SI, Takizawa H, Matsushima K. Analysis of mRNA With Microsomal Fractionation Using a SAGE-Based DNA Microarray System Facilitates Identification of the Genes Encoding Secretory Proteins. Genome Res. 2003 Jun 12 [Epub ahead of print] [PubMed][pdf]
  3. Medh RD, Webb MS, Miller AL, Johnson BH, Fofanov Y, Li T, Wood TG, Luxon BA, Thompson EB. Gene expression profile of human lymphoid CEM cells sensitive and resistant to glucocorticoid-evoked apoptosis. Genomics. 2003 Jun;81(6):543-55. [PubMed]
  4. Lin Z, Fillmore GC, Um TH, Elenitoba-Johnson KS, Lim MS. Comparative microarray analysis of gene expression during activation of human peripheral blood T cells and leukemic jurkat T cells. Lab Invest. 2003 Jun;83(6):765-76. [PubMed]
  5. Fukushima K, Ogawa H, Takahashi K, Naito H, Funayama Y, Kitayama T, Yonezawa H, Sasaki I. Non-pathogenic bacteria modulate colonic epithelial gene expression in germ-free mice. Scand J Gastroenterol. 2003 Jun;38(6):626-34. [PubMed]
  6. Cook KL, Sayler GS. Environmental application of array technology: promise, problems and practicalities. Curr Opin Biotechnol. 2003 Jun;14(3):311-8. [PubMed]
  7. Allen LT, Fox EJ, Blute I, Kelly ZD, Rochev Y, Keenan AK, Dawson KA, Gallagher WM. Interaction of soft condensed materials with living cells: Phenotype/transcriptome correlations for the hydrophobic effect. Proc Natl Acad Sci U S A 2003 May 27;100(11):6331-6 [PubMed][pdf]
  8. Murata Y, Watanabe T, Sato MS, Momose Y, Nakahara T, Oka SI, Iwahashi H. DMSO exposure facilitates phospholipid biosynthesis and cellular membrane proliferation in yeast cells. J Biol Chem. 2003 May 27 [epub ahead of print] [PubMed]
  9. Wang JK, Li TX, Bai YF, Lu ZH. Evaluating the binding affinities of NF-kappaB p50 homodimer to the wild-type and single-nucleotide mutant Ig-kappaB sites by the unimolecular dsDNA microarray. Anal Biochem. 2003 May 15;316(2):192-201. [PubMed]
  10. Ho M, Yang E, Matcuk G, Deng D, Sampas N, Tsalenko A, Tabibiazar R, Zhang Y, Chen M, Talbi S, Ho YD, Wang J, Tsao PS, Ben-Dor A, Yakhini Z, Bruhn L, Quertermous T. Identification of endothelial cell genes by combined database mining and microarray analysis. Physiol Genomics. 2003 May 13;13(3):249-62. [PubMed]
  11. Galaviz-Hernandez C, Stagg C, de Ridder G, Tanaka TS, Ko MS, Schlessinger D, Nagaraja R. Plac8 and Plac9, novel placental-enriched genes identified through microarray analysis. Gene. 2003 May 8; 309: 81-89. [PubMed]
  12. Karlberg EO, Andersson SG. Mitochondrial gene history and mRNA localization: is there a correlation? Nat Rev Genet. 2003 May;4(5):391-7. [PubMed]
  13. Nakazawa M, Cebria F, Mineta K, Ikeo K, Agata K, Gojobori T. Search for the Evolutionary Origin of a Brain; Planarian Brain Characterized by Microarray. Mol Biol Evol 2003 May;20(5):784-91 [PubMed]
  14. Jansen R, Bussemaker HJ, Gerstein M. Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models. Nucleic Acids Res. 2003 Apr 15;31(8):2242-51. [PubMed][web supplement]
  15. Van De Peppel J, Kemmeren P, Van Bakel H, Radonjic M, Van Leenen D, Holstege FC. Monitoring global messenger RNA changes in externally controlled microarray experiments. EMBO Rep. 2003 Apr;4(4):387-393. [PubMed]
  16. Sato TK, Panda S, Kay SA, Hogenesch JB. DNA arrays: applications and implications for circadian biology. J Biol Rhythms. 2003 Apr;18(2):96-105. [PubMed]
  17. Geliebter J, Mittelman A, Tiwari RK. Molecular phenotyping of the immune system by microarray analysis. Cancer Invest. 2003 Apr;21(2):293-303. [PubMed]

Gene product function

  1. Dailey L, Laplantine E, Priore R, Basilico C. A network of transcriptional and signaling events is activated by FGF to induce chondrocyte growth arrest and differentiation. J Cell Biol. 2003 Jun 23;161(6):1053-1066. [PubMed]
  2. Kim H, Xu GL, Borczuk AC, Busch S, Filmus J, Capurro M, Brody JS, Lange J, D'Armiento JM, Rothman PB, Powell CA. The heparan sulfate proteoglycan GPC3 is a potential lung tumor suppressor. Am J Respir Cell Mol Biol. 2003 Jun 19 [Epub ahead of print] [PubMed]
  3. Andersen K, Smith-Sorensen B, Pedersen KB, Hovig E, Myklebost O, Fodstad O, Maelandsmo GM. Interferon-gamma suppresses S100A4 transcription independently of apoptosis or cell cycle arrest. Br J Cancer. 2003 Jun 16;88(12):1995-2001. [PubMed]
  4. Nakagomi S, Suzuki Y, Namikawa K, Kiryu-Seo S, Kiyama H. Expression of the activating transcription factor 3 prevents c-Jun N-terminal kinase-induced neuronal death by promoting heat shock protein 27 expression and Akt activation. J Neurosci. 2003 Jun 15;23(12):5187-96. [PubMed]
  5. Ongusaha PP, Ouchi T, Kim KT, Nytko E, Kwak JC, Duda RB, Deng CX, Lee SW. BRCA1 shifts p53-mediated cellular outcomes towards irreversible growth arrest. Oncogene. 2003 Jun 12;22(24):3749-58. [PubMed]
  6. Mirza A, Wu Q, Wang L, McClanahan T, Bishop WR, Gheyas F, Ding W, Hutchins B, Hockenberry T, Kirschmeier P, Greene JR, Liu S. Global transcriptional program of p53 target genes during the process of apoptosis and cell cycle progression. Oncogene. 2003 Jun 5;22(23):3645-54. [PubMed]
  7. Deneen B, Welford SM, Ho T, Hernandez F, Kurland I, Denny CT. PIM3 Proto-Oncogene Kinase Is a Common Transcriptional Target of Divergent EWS/ETS Oncoproteins. Mol Cell Biol. 2003 Jun 1;23(11):3897-3908. [PubMed]
  8. Grumolato L, Elkahloun AG, Ghzili H, Alexandre D, Coulouarn C, Yon L, Salier JP, Eiden LE, Fournier A, Vaudry H, Anouar Y. Microarray and Suppression Subtractive Hybridization Analyses of Gene Expression in Pheochromocytoma Cells Reveal Pleiotropic Effects of Pituitary Adenylate Cyclase-Activating Polypeptide on Cell Proliferation, Survival, and Adhesion. Endocrinology. 2003 Jun 1;144(6):2368-2379. [PubMed]
  9. Gomez D, Reich NC. Stimulation of primary human endothelial cell proliferation by IFN. J Immunol. 2003 Jun 1;170(11):5373-81. [PubMed]
  10. Zhao B, Stavchansky SA, Bowden RA, Bowman PD. Effect of interleukin-1beta and tumor necrosis factor-alpha on gene expression in human endothelial cells. Am J Physiol Cell Physiol. 2003 Jun;284(6):C1577-83. [PubMed]
  11. Liang X, Zhang H, Zhou A, Wang H. AngRem104, an Angiotensin II-Induced Novel Upregulated Gene in Human Mesangial Cells, Is Potentially Involved in the Regulation of Fibronectin Expression. J Am Soc Nephrol. 2003 Jun;14(6):1443-51. [PubMed]
  12. Rascle A, Johnston JA, Amati B. Deacetylase Activity Is Required for Recruitment of the Basal Transcription Machinery and Transactivation by STAT5. Mol Cell Biol. 2003 Jun;23(12):4162-73. [PubMed]
  13. Hayashi SI, Eguchi H, Tanimoto K, Yoshida T, Omoto Y, Inoue A, Yoshida N, Yamaguchi Y. International Congress on Hormonal Steroids and Hormones and Cancer: The expression and function of estrogen receptor alpha and beta in human breast cancer and its clinical application. Endocr Relat Cancer. 2003 Jun;10(2):193-202. [PubMed]
  14. Faraci E, Eck M, Gerstmayer B, Bosio A, Vogel WF. An extracellular matrix-specific microarray allowed the identification of target genes downstream of discoidin domain receptors. Matrix Biol. 2003 Jun;22(4):373-81. [PubMed]
  15. Zingarelli B, Hake PW, O'Connor M, Denenberg A, Kong S, Aronow BJ.  Absence of Poly(ADP-ribose)Polymerase-1 Alters Nuclear Factor-kappaB Activation and Gene Expression of Apoptosis Regulators after Reperfusion Injury. Mol Med. 2003 May-Aug;9(5-8):143-53. [PubMed]
  16. Lotem J, Gal H, Kama R, Amariglio N, Rechavi G, Domany E, Sachs L, Givol D. Inhibition of p53-induced apoptosis without affecting expression of p53-regulated genes. Proc Natl Acad Sci U S A 2003 May 27;100(11):6718-23 [PubMed][pdf]
  17. Croker BA, Krebs DL, Zhang JG, Wormald S, Willson TA, Stanley EG, Robb L, Greenhalgh CJ, Forster I, Clausen BE, Nicola NA, Metcalf D, Hilton DJ, Roberts AW, Alexander WS. SOCS3 negatively regulates IL-6 signaling in vivo. Nat Immunol. 2003 May 18 [epub ahead of print] [PubMed]
  18. Balint E, Lapointe D, Drissi H, Van Der Meijden C, Young DW, Van Wijnen AJ, Stein JL, Stein GS, Lian JB. Phenotype discovery by gene expression profiling: Mapping of biological processes linked to BMP-2-mediated osteoblast differentiation. J Cell Biochem. 2003 May 15;89(2):401-26. [PubMed]
  19. Lee JS, Frevert CW, Wurfel MM, Peiper SC, Wong VA, Ballman KK, Ruzinski JT, Rhim JS, Martin TR, Goodman RB. Duffy Antigen Facilitates Movement of Chemokine Across the Endothelium In Vitro and Promotes Neutrophil Transmigration In Vitro and In Vivo. J Immunol. 2003 May 15;170(10):5244-5251. [PubMed]
  20. Ogawa K, Chen F, Kim YJ, Chen Y. Transcriptional regulation of tristetraprolin by transforming growth factor-beta in human T cells. J Biol Chem. 2003 May 15 [epub ahead of print] [PubMed]
  21. Mittelstadt PR, Ashwell JD. Disruption of glucocorticoid receptor exon 2 yields a ligand-responsive C-terminal fragment that regulates gene expression. Mol Endocrinol. 2003 May 15 [epub ahead of print] [PubMed]
  22. Wu G, Nomoto S, Hoque MO, Dracheva T, Osada M, Lee CC, Dong SM, Guo Z, Benoit N, Cohen Y, Rechthand P, Califano J, Moon CS, Ratovitski E, Jen J, Sidransky D, Trink B. DeltaNp63alpha and TAp63alpha Regulate Transcription of Genes with Distinct Biological Functions in Cancer and Development. Cancer Res. 2003 May 15;63(10):2351-7. [PubMed]
  23. Johnson EC, Garczynski SF, Park D, Crim JW, Nassel DR, Taghert PH. Identification and characterization of a G protein-coupled receptor for the neuropeptide proctolin in Drosophila melanogaster. Proc Natl Acad Sci U S A 2003 May 13;100(10):6198-203 [PubMed][pdf][web supplement]
  24. Orian A, Van Steensel B, Delrow J, Bussemaker HJ, Li L, Sawado T, Williams E, Loo LW, Cowley SM, Yost C, Pierce S, Edgar BA, Parkhurst SM, Eisenman RN. Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network.Genes Dev 2003 May 1;17(9):1101-14 [PubMed]
  25. Mackay A, Jones C, Dexter T, Silva RL, Bulmer K, Jones A, Simpson P, Harris RA, Jat PS, Neville AM, Reis LF, Lakhani SR, O'Hare MJ. cDNA microarray analysis of genes associated with ERBB2 (HER2/neu) overexpression in human mammary luminal epithelial cells. Oncogene. 2003 May 1;22(17):2680-8. [PubMed]
  26. Teramoto H, Malek RL, Behbahani B, Castellone MD, Lee NH, Gutkind JS. Identification of H-Ras, RhoA, Rac1 and Cdc42 responsive genes. Oncogene. 2003 May 1;22(17):2689-97. [PubMed]
  27. van Noort V, Snel B, Huynen MA. Predicting gene function by conserved co-expression. Trends Genet. 2003 May; 19: 238-242. [PubMed]
  28. Wang G, Zhang J, Moskophidis D, Mivechi NF. Targeted disruption of the heat shock transcription factor (hsf)-2 gene results in increased embryonic lethality, neuronal defects, and reduced spermatogenesis. Genesis. 2003 May;36(1):48-61. [PubMed]
  29. Clifford JL, Yang X, Walch E, Wang M, Lippman SM. Dominant Negative Signal Transducer and Activator of Transcription 2 (STAT2) Protein: Stable Expression Blocks Interferon alpha Action in Skin Squamous Cell Carcinoma Cells. Mol Cancer Ther. 2003 May;2(5):453-9. [PubMed]
  30. Smith AG, Davies R, Dalton TP, Miller ML, Judah D, Riley J, Gant T, Nebert DW. Intrinsic hepatic phenotype associated with the cyp1a2 gene as shown by cDNA expression microarray analysis of the knockout mouse. Environ Health Perspect. 2003 May;111(6):855-61. [PubMed]
  31. Grooteclaes M, Deveraux Q, Hildebrand J, Zhang Q, Goodman RH, Frisch SM. C-terminal-binding protein corepresses epithelial and proapoptotic gene expression programs. Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4568-73. [PubMed][pdf][web supplement]
  32. Shih AY, Johnson DA, Wong G, Kraft AD, Jiang L, Erb H, Johnson JA, Murphy TH. Coordinate regulation of glutathione biosynthesis and release by Nrf2-expressing glia potently protects neurons from oxidative stress. J Neurosci. 2003 Apr 15;23(8):3394-406. [PubMed]
  33. Kakar SS, Winters SJ, Zacharias W, Miller DM, Flynn S. Identification of distinct gene expression profiles associated with treatment of LbetaT2 cells with gonadotropin-releasing hormone agonist using microarray analysis. Gene. 2003 Apr 10;308:67-77. [PubMed]
  34. Unoki M, Nakamura Y. EGR2 induces apoptosis in various cancer cell lines by direct transactivation of BNIP3L and BAK. Oncogene. 2003 Apr 10;22(14):2172-85. [PubMed]
  35. Young ET, Dombek KM, Tachibana C, Ideker T. Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8. J Biol Chem. 2003 Apr 3 [epub ahead of print] [PubMed]
  36. Yamazaki K, Aso T, Ohnishi Y, Ohno M, Tamura K, Shuin T, Kitajima S, Nakabeppu Y. Mammalian elongin A is not essential for cell viability but required for proper cell-cycle progression with limited alteration of gene expression.  J Biol Chem 2003 Apr 11;278(15):13585-13589 [PubMed]
  37. O'Connell BC, Cheung AF, Simkevich CP, Tam W, Ren X, Mateyak MK, Sedivy JM. A large scale genetic analysis of c-Myc-regulated gene expression patterns. J. Biol. Chem. 2003 Apr 4; 278: 12563-12573. [PubMed]
  38. Zhou A, Scoggin S, Gaynor RB, Williams NS. Identification of NF-kappaB-regulated genes induced by TNFalpha utilizing expression profiling and RNA interference. Oncogene. 2003 Apr 3;22(13):2054-64. [PubMed]
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General Physiology

  1. Sukhanov S, Hua Song Y, Delafontaine P. Global analysis of differentially expressed genes in oxidized LDL-treated human aortic smooth muscle cells. Biochem Biophys Res Commun. 2003 Jun 27;306(2):443-9. [PubMed]
  2. Otsuki M, Gao H, Dahlman-Wright K, Ohlsson C, Eguchi N, Urade Y, Gustafsson JA. Specific Regulation of Lipocalin-Type Prostaglandin D Synthase in Mouse Heart by Estrogen Receptor {beta} Mol Endocrinol. 2003 Jun 26 [Epub ahead of print] [PubMed]
  3. Daigo Y, Takayama I, Ward SM, Sanders KM, Fujino MA. Novel human and mouse genes encoding a shank-interacting protein and its upregulation in gastric fundus of W/WV mouse. J Gastroenterol Hepatol. 2003 Jun;18(6):712-718. [PubMed]
  4. Kato H, Kimura T. Evaluation of the effects of the dietary intake of proteins and amino acids by DNA microarray technology. J Nutr. 2003 Jun;133(6):2073S-7S. [PubMed]
  5. Wildhaber BE, Yang H, Tazuke Y, Teitelbaum DH. Gene alteration of intestinal intraepithelial lymphocytes with administration of total parenteral nutrition. J Pediatr Surg. 2003 Jun;38(6):840-3. [PubMed]
  6. Watanabe H, Suzuki A, Kobayashi M, Takahashi E, Itamoto M, Lubahn DB, Handa H, Iguchi T. Analysis of temporal changes in the expression of estrogen-regulated genes in the uterus. J Mol Endocrinol. 2003 Jun;30(3):347-358. [PubMed]
  7. Bethin KE, Nagai Y, Sladek R, Asada M, Sadovsky Y, Hudson TJ, Muglia LJ. Microarray Analysis of Uterine Gene Expression in Mouse and Human Pregnancy. Mol Endocrinol. 2003 May 29 [Epub ahead of print] [PubMed]
  8. Gumz ML, Popp MP, Wingo CS, Cain BD. Early Transcriptional Effects of Aldosterone in a Mouse Inner Medullary Collecting Duct Cell Line. Am J Physiol Renal Physiol. 2003 May 27 [epub ahead of print] [PubMed]
  9. Cousins RJ, Blanchard RK, Popp MP, Liu L, Cao J, Moore JB, Green CL. A global view of the selectivity of zinc deprivation and excess on genes expressed in human THP-1 mononuclear cells. Proc Natl Acad Sci U S A. 2003 May 19 [epub ahead of print] [PubMed]
  10. Sakao E, Ishihara A, Horikawa K, Akiyama M, Arai M, Kato M, Seki N, Fukunaga K, Shimizu-Yabe A, Iwase K, Ohtsuka S, Sato T, Kohno Y, Shibata S, Takiguchi M. Two-peaked synchronization in day/night expression rhythms of the fibrinogen gene cluster in the mouse liver. J Biol Chem. 2003 May 14 [epub ahead of print] [PubMed]
  11. Ishiwata H, Katsuma S, Kizaki K, Patel OV, Nakano H, Takahashi T, Imai K, Hirasawa A, Shiojima S, Ikawa H, Suzuki Y, Tsujimoto G, Izaike Y, Todoroki J, Hashizume K. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Mol Reprod Dev. 2003 May;65(1):9-18. [PubMed]
  12. Landowski TH, Olashaw NE, Agrawal D, Dalton WS. Cell adhesion-mediated drug resistance (CAM-DR) is associated with activation of NF-kappaB (RelB/p50) in myeloma cells. Oncogene. 2003 Apr 24;22(16):2417-21. [PubMed]
  13. Bey L, Akunuri N, Zhao P, Hoffman EP, Hamilton DG, Hamilton MT. Patterns of global gene expression in rat skeletal muscle during unloading and low-intensity ambulatory activity. Physiol Genomics. 2003 Apr 16;13(2):157-67. [PubMed][web supplement]
  14. Wesolowski SR, Allan MF, Nielsen MK, Pomp D. Evaluation of hypothalamic gene expression in mice divergently selected for heat loss. Physiol Genomics. 2003 Apr 16;13(2):129-37. [PubMed]
  15. Edwards MG, Sarkar D, Klopp R, Morrow JD, Weindruch R, Prolla TA. Age-related impairment of the transcriptional responses to oxidative stress in the mouse heart. Physiol Genomics. 2003 Apr 16;13(2):119-27. [PubMed]
  16. Lee JM, Calkins MJ, Chan K, Kan YW, Johnson JA. Identification of the NF-E2-related factor 2-dependent genes conferring protection against oxidative stress in primary cortical astrocytes using oligonucleotide microarray analysis. J. Biol. Chem. 2003 Apr 4; 278: 12029-12038. [PubMed]
  17. Wang Z, Malone MH, He H, McColl KS, Distelhorst CW. Microarray analysis uncovers the induction of the pro-apoptotic BH3-only protein Bim in multiple models of glucocorticoid induced apoptosis. J Biol Chem. 2003 Apr 2 [epub ahead of print] [PubMed]
  18. Guo G, Yan-Sanders Y, Lyn-Cook BD, Wang T, Tamae D, Ogi J, Khaletskiy A, Li Z, Weydert C, Longmate JA, Huang TT, Spitz DR, Oberley LW, Li JJ. Manganese Superoxide Dismutase-Mediated Gene Expression in Radiation-Induced Adaptive Responses. Mol. Cell. Biol. 2003 Apr 1; 23: 2362-2378. [PubMed]
  19. Zhao H, Tian W, Tai C, Cohen DM. Hypertonic induction of COX-2 expression in renal medullary epithelial cells requires transactivation of the EGF receptor. Am J Physiol Renal Physiol. 2003 Apr 1 [epub ahead of print] [PubMed]
  20. Jiang F, Wang Z. Identification of androgen-responsive genes in the rat ventral prostate by complementary deoxyribonucleic Acid subtraction and microarray. Endocrinology. 2003 Apr;144(4):1257-65. [PubMed]
  21. Schlecht U, Primig M. Mining meiosis and gametogenesis with DNA microarrays. Reproduction. 2003 Apr;125(4):447-56. [PubMed]

Development & Differentiation

  1. Arai M, Yokosuka O, Chiba T, Imazeki F, Kato M, Hashida J, Ueda Y, Sugano S, Hashimoto K, Saisho H, Takiguchi M, Seki N. Gene expression profiling reveals the mechanism and pathophysiology of mouse liver regeneration. J Biol Chem. 2003 Jun 2 [Epub ahead of print] [PubMed]
  2. Grumolato L, Elkahloun AG, Ghzili H, Alexandre D, Coulouarn C, Yon L, Salier JP, Eiden LE, Fournier A, Vaudry H, Anouar Y. Microarray and Suppression Subtractive Hybridization Analyses of Gene Expression in Pheochromocytoma Cells Reveal Pleiotropic Effects of Pituitary Adenylate Cyclase-Activating Polypeptide on Cell Proliferation, Survival, and Adhesion. Endocrinology. 2003 Jun 1;144(6):2368-2379. [PubMed]
  3. Buttitta L, Tanaka TS, Chen AE, Ko MS, Fan CM. Microarray analysis of somitogenesis reveals novel targets of different WNT signaling pathways in the somitic mesoderm. Dev Biol. 2003 Jun 1;258(1):91-104. [PubMed]
  4. Taghon T, Thys K, De Smedt M, Weerkamp F, Staal FJ, Plum J, Leclercq G. Homeobox gene expression profile in human hematopoietic multipotent stem cells and T-cell progenitors: implications for human T-cell development. Leukemia. 2003 Jun;17(6):1157-63. [PubMed] 
  5. Fukuhara Y, Hirasawa A, Li XK, Kawasaki M, Fujino M, Funeshima N, Katsuma S, Shiojima S, Yamada M, Okuyama T, Suzuki S, Tsujimoto G. Gene expression profile in the regenerating rat liver after partial hepatectomy. J Hepatol. 2003 Jun;38(6):784-92. [PubMed]
  6. Hoffmann R, Melchers F. A genomic view of lymphocyte development. Curr Opin Immunol. 2003 Jun;15(3):239-45. [PubMed]
  7. Ishibashi T, Nakazawa M, Ono H, Satoh N, Gojobori T, Fujiwara S. Microarray analysis of embryonic retinoic acid target genes in the ascidian Ciona intestinalis. Dev Growth Differ. 2003 Jun;45(3):249-259. [PubMed]
  8. Bonner AE, Lemon WJ, You M. Gene expression signatures identify novel regulatory pathways during murine lung development: implications for lung tumorigenesis. J Med Genet. 2003 Jun;40(6):408-17. [PubMed]
  9. Balint E, Lapointe D, Drissi H, Van Der Meijden C, Young DW, Van Wijnen AJ, Stein JL, Stein GS, Lian JB. Phenotype discovery by gene expression profiling: Mapping of biological processes linked to BMP-2-mediated osteoblast differentiation. J Cell Biochem. 2003 May 15;89(2):401-26. [PubMed]
  10. Kriz V, Anneren C, Lai C, Karlsson J, Mares J, Welsh M. The SHB adapter protein is required for efficient multilineage differentiation of mouse embryonic stem cells. Exp Cell Res. 2003 May 15;286(1):40-56. [PubMed]
  11. Dontu G, Abdallah WM, Foley JM, Jackson KW, Clarke MF, Kawamura MJ, Wicha MS. In vitro propagation and transcriptional profiling of human mammary stem/progenitor cells. Genes Dev. 2003 May 15; 17: 1253-1270. [PubMed]
  12. Carter MG, Hamatani T, Sharov AA, Carmack CE, Qian Y, Aiba K, Ko NT, Dudekula DB, Brzoska PM, Hwang SS, Ko MS. In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling. Genome Res. 2003 May;13(5):1011-21. [PubMed]
  13. Tureci O, Bian H, Nestle FO, Raddrizzani L, Rosinski JA, Tassis A, Hilton H, Walstead M, Sahin U, Hammer J. Cascades of transcriptional induction during dendritic cell maturation revealed by genome-wide expression analysis. FASEB J. 2003 May;17(8):836-47. [PubMed]
  14. Krakow D, Sebald ET, Pogue R, Rimoin LP, King L, Cohn DH. Analysis of clones from a human cartilage cDNA library provides insight into chondrocyte gene expression and identifies novel candidate genes for the osteochondrodysplasias. Mol Genet Metab. 2003 May;79(1):34-42. [PubMed]
  15. Diaz E, Yang YH, Ferreira T, Loh KC, Okazaki Y, Hayashizaki Y, Tessier-Lavigne M, Speed TP, Ngai J. Analysis of gene expression in the developing mouse retina. Proc Natl Acad Sci U S A 2003 Apr 29;100(9):5491-6 [PubMed][pdf][web supplement]
  16. Ton C, Stamatiou D, Liew CC. Gene expression profile of zebrafish exposed to hypoxia during development. Physiol Genomics. 2003 Apr 16;13(2):97-106. [PubMed][web supplement]
  17. Smith L, Greenfield A. DNA microarrays and development. Hum Mol Genet. 2003 Apr 2;12(Suppl 1):R1-8. [PubMed]
  18. Michaut L, Flister S, Neeb M, White KP, Certa U, Gehring WJ. Analysis of the eye developmental pathway in Drosophila using DNA microarrays. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4024-9. [PubMed][pdf][web supplement]
  19. Messmer D, Messmer B, Chiorazzi N. The global transcriptional maturation program and stimuli-specific gene expression profiles of human myeloid dendritic cells. Int Immunol. 2003 Apr;15(4):491-503. [PubMed]
  20. Billiard J, Moran RA, Whitley MZ, Chatterjee-Kishore M, Gillis K, Brown EL, Komm BS, Bodine PV. Transcriptional profiling of human osteoblast differentiation. J Cell Biochem. 2003 Apr; 89: 389-400. [PubMed]
  21. Klein U, Tu Y, Stolovitzky GA, Keller JL, Haddad J Jr, Miljkovic V, Cattoretti G, Califano A, Dalla-Favera R. Gene Expression Dynamics during Germinal Center Transit in B Cells. Ann N Y Acad Sci. 2003 Apr;987:166-172. [PubMed]
  22. Brown NL, Knott L, Halligan E, Yarram SJ, Mansell JP, Sandy JR. Microarray analysis of murine palatogenesis: Temporal expression of genes during normal palate development. Dev Growth Differ. 2003 Apr;45(2):153-65. [PubMed]
Neurobiology
  1. Dabrowski M, Aerts S, Van Hummelen P, Craessaerts K, De Moor B, Annaert W, Moreau Y, De Strooper B. Gene profiling of hippocampal neuronal culture. J Neurochem. 2003 Jun;85(5):1279-1288. [PubMed]
  2. Cohen RI, Rottkamp DM, Maric D, Barker JL, Hudson LD. A role for semaphorins and neuropilins in oligodendrocyte guidance. J Neurochem. 2003 Jun;85(5):1262-78. [PubMed]
  3. Weinreb O, Mandel S, Youdim MB.