My microarray journal watch - year 2003 Jan-Mar  [ this week | 2004 Oct-Dec | 2004 Jul-Sep | 2004 Apr-Jun | 2004 Jan-Mar | 2003 Oct-Dec | 2003 Jul-Sep | 2003 Apr-Jun | 2003 Jan-Mar | 2002 Jul-Dec | 2002 Jan-Jun | 2001 Jul-Dec | 2001 Jan-Jun | 2000 | 1999 | 1998 | 1997 | 1996 & before ]

General
Biotechniques 2003 Microarrays and Cancer: Research and Applications suppl
Human disease studies
   Disease screening, profiling and classification
   Diagnosis, prognosis and clinical applications
   Animal model studies
   In vitro studies
Basic science studies
   Gene product function
   General physiology
   Development & differentiation
   Neurobiology
   Signal transduction
   Human
   Animal
   Plant
   Microbiology
Genome scale studies
   Network/pathway reconstruction and analysis
Genetic analysis
   ArrayCGH

Pharmacogenomics and pharmacogenetics
Toxicogenomics
Technical development
Other related technical issue; microdissection; linear amplification of RNA (aRNA)
Experimental design, sample size & power
Data analysis
   Oligo design for array manufacturing
   Image analysis
   Normalization
   Pattern recognition, classification & data mining by unsupervised methods
   Pattern recognition, classification & data mining by supervised methods
   Network/pathway reconstruction and analysis
   Statistical significance of analysis
   Software
Database
Tissue microarray
Protein array
Biochip/lab-on-a-chip/micro-Total Analysis System (uTAS)
Cell microarrays
Other array platforms
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General

  1. Glueck SB, Dzau VJ. Our new requirement for MIAME standards. Physiol Genomics. 2003 Mar 18;13(1):1-2. [PubMed]
  2. Jain K. Lab-on-a-Chip and Microarrays: Discovery and Development. Pharmacogenomics. 2003 Mar;4(2):123-125. [PubMed]
  3. Panda S, Sato TK, Hampton GM, Hogenesch JB. An array of insights: application of DNA chip technology in the study of cell biology. Trends Cell Biol. 2003 Mar;13(3):151-6. [PubMed]
  4. Wilson DS, Nock S. Recent developments in protein microarray technology. Angew Chem Int Ed Engl. 2003 Feb 3;42(5):494-500. [PubMed]
  5. Barrett JC, Kawasaki ES. Microarrays: the use of oligonucleotides and cDNA for the analysis of gene expression. Drug Discov Today. 2003 Feb 1;8(3):134-41. [PubMed]
  6. Microarray policy. Nat Immunol. 2003 Feb;4(2):93. [PubMed]
  7. Grody WW. Ethical issues raised by genetic testing with oligonucleotide microarrays. Mol Biotechnol. 2003 Feb;23(2):127-38. [PubMed]
  8. Mouledous L, Gutstein HB. Gene arrays and proteomics. A primer. Methods Mol Med. 2003;84:141-54. [PubMed]
Biotechniques 2003 Mar; Microarrays and Cancer: Research and Applications supplement
  1. Ochs MF, Godwin AK. Introduction.Biotechniques. 2003 Mar;Suppl [pdf]
  2. Ochs MF, Godwin AK. Microarrays in cancer: research and applications. Biotechniques. 2003 Mar;Suppl:4-15. [PubMed][pdf]
  3. Simon RM, Dobbin K. Experimental design of DNA microarray experiments. Biotechniques. 2003 Mar;Suppl:16-21. [PubMed][pdf]
  4. Scharpf R, Garrett ES, Hu J, Parmigiani G. Statistical modeling and visualization of molecular profiles in cancer. Biotechniques. 2003 Mar;Suppl:22-9. [PubMed][pdf]
  5. Ringner M, Peterson C. Microarray-based cancer diagnosis with artificial neural networks. Biotechniques. 2003 Mar;Suppl:30-5. [PubMed][pdf]
  6. Anderle P, Duval M, Draghici S, Kuklin A, Littlejohn TG, Medrano JF, Vilanova D, Roberts MA. Gene expression databases and data mining. Biotechniques. 2003 Mar;Suppl:36-44. [PubMed][pdf]
  7. Dudoit S, Gentleman RC, Quackenbush J. Open source software for the analysis of microarray data. Biotechniques. 2003 Mar;Suppl:45-51. [PubMed][pdf]
  8. Rubenstein K. Commercial aspects of microarray technology. Biotechniques. 2003 Mar;Suppl:52-4. [PubMed][pdf]
  9. Draghici S, Khatri P, Shah A, Tainsky MA. Assessing the functional bias of commercial microarrays using the onto-compare database. Biotechniques. 2003 Mar;Suppl:55-61. [PubMed][pdf]
  10. Johnson K, Lin S. QA/QC as a pressing need for microarray analysis: meeting report from CAMDA'02. Biotechniques. 2003 Mar;Suppl:62-3. [PubMed][pdf]
  11. O'Neill GM, Catchpoole DR, Golemis EA. From correlation to causality: microarrays, cancer, and cancer treatment. Biotechniques. 2003 Mar;Suppl:64-71. [PubMed][pdf]

Human disease studies

  1. Poulaki V. Microdissection, microarrays and proteomics: a new approach to the study of eye diseases. Graefes Arch Clin Exp Ophthalmol. 2003 Jun 26 [Epub ahead of print] [PubMed]
  2. Webb T. Microarray studies challenge theories of metastasis. J Natl Cancer Inst. 2003 Mar 5;95(5):350-1. [PubMed]
  3. Nawrocki S, Skacel T, Brodowicz T. From microarrays to new therapeutic approaches in bladder cancer. Pharmacogenomics. 2003 Mar;4(2):179-89. [PubMed]
  4. Saban MR, Nguyen NB, Hurst RE, Saban R. Gene expression profiling of inflammatory bladder disorders. Expert Rev Mol Diagn. 2003 Mar;3(2):217-35. [PubMed]
  5. Macgregor PF. Gene expression in cancer: the application of microarrays. Expert Rev Mol Diagn. 2003 Mar;3(2):185-200. [PubMed]
  6. Kaneko S, Kobayashi K. Clinical application of a DNA chip in the field of liver diseases. J Gastroenterol. 2003 Mar;38 Suppl 15:85-8. [PubMed]
  7. Bertucci F, Viens P, Hingamp P, Nasser V, Houlgatte R, Birnbaum D. Breast cancer revisited using DNA array-based gene expression profiling. Int J Cancer. 2003 Feb 20;103(5):565-71. [PubMed]
  8. Liu ET. Classification of cancers by expression profiling. Curr Opin Genet Dev. 2003 Feb;13(1):97-103. [PubMed]
  9. Stein TP, Wade CE. Protein turnover in atrophying muscle: from nutritional intervention to microarray expression analysis. Curr Opin Clin Nutr Metab Care. 2003 Jan;6(1):95-102. [PubMed]
  10. Guo QM. DNA microarray and cancer. Curr Opin Oncol. 2003 Jan;15(1):36-43. [PubMed]
  11. van Belkum A, Troesch A. High-density DNA arrays for comparative genomics and epidemiological studies in clinical microbiology. Expert Rev Mol Diagn. 2003 Jan;3(1):1-4. [PubMed]
  12. Mandel S, Grunblatt E, Riederer P, Youdim MB. Genes and oxidative stress in parkinsonism: cDNA microarray studies. Adv Neurol. 2003;91:123-32. [PubMed]
  13. Shi H, Maier S, Nimmrich I, Yan PS, Caldwell CW, Olek A, Huang TH. Oligonucleotide-based microarray for DNA methylation analysis: Principles and applications. J Cell Biochem. 2003;88(1):138-43. [PubMed]
  14. Amundson S, Fornace A. Microarray approaches for analysis of tumor suppressor gene function. Methods Mol Biol. 2003;223:141-54. [PubMed]
  15. Cho-Chung YS. Antisense Protein Kinase A RIalpha-Induced Tumor Reversion: Portrait Of A Microarray. Cell Mol Biol Lett. 2003;8(2A):510-1. [PubMed]
  16. Youdim MB. What have we learnt from CDNA microarray gene expression studies about the role of iron in MPTP induced neurodegeneration and Parkinson's disease? J Neural Transm Suppl. 2003;(65):73-88. [PubMed]

Disease screening, profiling and classification

  1. Weiss MM, Kuipers EJ, Postma C, Snijders AM, Siccama I, Pinkel D, Westerga J, Meuwissen SG, Albertson DG, Meijer GA. Genomic profiling of gastric cancer predicts lymph node status and survival. Oncogene. 2003 Mar 27;22(12):1872-9. [PubMed]
  2. Zhou X, Krueger JG, Kao MC, Lee E, Du F, Menter A, Wong WH, Bowcock AM. Novel mechanisms of T-cell and dendritic cell activation revealed by profiling of psoriasis on the 63,100-element oligonucleotide array. Physiol Genomics. 2003 Mar 18;13(1):69-78. [PubMed]
  3. Bennett L, Palucka AK, Arce E, Cantrell V, Borvak J, Banchereau J, Pascual V. Interferon and granulopoiesis signatures in systemic lupus erythematosus blood. J Exp Med. 2003 Mar 17;197(6):711-23. [PubMed]
  4. Noguchi S, Tsukahara T, Fujita M, Kurokawa R, Tachikawa M, Toda T, Tsujimoto A, Arahata K, Nishino I. cDNA microarray analysis of individual Duchenne muscular dystrophy patients. Hum Mol Genet. 2003 Mar 15;12(6):595-600. [PubMed][web supplement]
  5. Woodside KJ, Hernandez A, Smith FW, Xue XY, Hu M, Daller JA, Hunter GC. Differential gene expression in primary and recurrent carotid stenosis. Biochem Biophys Res Commun. 2003 Mar 14;302(3):509-14.  [PubMed]
  6. Hedenfalk I, Ringner M, Ben-Dor A, Yakhini Z, Chen Y, Chebil G, Ach R, Loman N, Olsson H, Meltzer P, Borg A, Trent J. Molecular classification of familial non-BRCA1/BRCA2 breast cancer. Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2532-7. [PubMed][pdf][web supplement]
  7. Arimoto T, Katagiri T, Oda K, Tsunoda T, Yasugi T, Osuga Y, Yoshikawa H, Nishii O, Yano T, Taketani Y, Nakamura Y. Genome-wide cDNA microarray analysis of gene-expression profiles involved in ovarian endometriosis. Int J Oncol. 2003 Mar;22(3):551-60. [PubMed]
  8. De Vos S, Krug U, Hofmann WK, Pinkus GS, Swerdlow SH, Wachsman W, Grogan TM, Said JW, Koeffler HP. Cell Cycle Alterations in the Blastoid Variant of Mantle Cell Lymphoma (MCL-BV) as Detected by Gene Expression Profiling of Mantle Cell Lymphoma (MCL) and MCL-BV. Diagn Mol Pathol. 2003 Mar;12(1):35-43. [PubMed]
  9. Ji X, Cheung R, Cooper S, Li Q, Greenberg HB, He XS. Interferon alfa regulated gene expression in patients initiating interferon treatment for chronic hepatitis C. Hepatology. 2003 Mar;37(3):610-621. [PubMed]
  10. Higgins JP, Shinghal R, Gill H, Reese JH, Terris M, Cohen RJ, Fero M, Pollack JR, Van De Rijn M, Brooks JD. Gene expression patterns in renal cell carcinoma assessed by complementary DNA microarray. Am J Pathol. 2003 Mar;162(3):925-32. [PubMed]
  11. Sjogren H, Meis-Kindblom JM, Orndal C, Bergh P, Ptaszynski K, Aman P, Kindblom LG, Stenman G. Studies on the molecular pathogenesis of extraskeletal myxoid chondrosarcoma-cytogenetic, molecular genetic, and cDNA microarray analyses. Am J Pathol. 2003 Mar;162(3):781-92. [PubMed]
  12. Anders RA, Yerian LM, Tretiakova M, Davison JM, Quigg RJ, Domer PH, Hoberg J, Hart J. cDNA microarray analysis of macroregenerative and dysplastic nodules in end-stage hepatitis C virus-induced cirrhosis. Am J Pathol. 2003 Mar;162(3):991-1000. [PubMed]
  13. Williams NS, Gaynor RB, Scoggin S, Verma U, Gokaslan T, Simmang C, Fleming J, Tavana D, Frenkel E, Becerra C. Identification and validation of genes involved in the pathogenesis of colorectal cancer using cDNA microarrays and RNA interference. Clin Cancer Res. 2003 Mar;9(3):931-46. [PubMed]
  14. Nakao K, Wada J, Ota K, Ichikawa H, Akagi S, Okamoto A, Hida K, Nagake Y, Makino H. Perturbation of autocrine/paracrine loops of burst-forming units of erythroid-derived cells in rHuEPO-hyporesponsive hemodialysis patients. Am J Kidney Dis. 2003 Mar;41(3):624-36. [PubMed]
  15. Pusztai L, Sotiriou C, Buchholz TA, Meric F, Symmans WF, Esteva FJ, Sahin A, Liu ET, Hortobagi GN. Molecular profiles of invasive mucinous and ductal carcinomas of the breast: a molecular case study. Cancer Genet Cytogenet. 2003 Mar;141(2):148-53. [PubMed]
  16. Wei SH, Brown R, Huang TH. Aberrant DNA Methylation in Ovarian Cancer: Is There an Epigenetic Predisposition to Drug Response? Ann N Y Acad Sci. 2003 Mar;983:243-250. [PubMed]
  17. Smith MW, Yue ZN, Geiss GK, Sadovnikova NY, Carter VS, Boix L, Lazaro CA, Rosenberg GB, Bumgarner RE, Fausto N, Bruix J, Katze MG. Identification of novel tumor markers in hepatitis C virus-associated hepatocellular carcinoma. Cancer Res. 2003 Feb 15;63(4):859-64. [PubMed]
  18. DePrimo SE, Wong LM, Khatry DB, Nicholas SL, Manning WC, Smolich BD, O'Farrell AM, Cherrington JM. Expression profiling of blood samples from an SU5416 Phase III metastatic colorectal cancer clinical trial: a novel strategy for biomarker identification. BMC Cancer. 2003 Feb 7;3(1):3. [PubMed]
  19. Liu ET. Classification of cancer by expression profiling. Curr Opin Genet Dev. 2003 Feb; 13:97-103. [PubMed]
  20. Kruger S, Thorns C, Stocker W, Muller-Kunert E, Bohle A, Feller AC. Prognostic Value of MCM2 Immunoreactivity in Stage T1 Transitional Cell Carcinoma of the Bladder. Eur Urol. 2003 Feb;43(2):138-45. [PubMed]
  21. Jazaeri AA, Lu K, Schmandt R, Harris CP, Rao PH, Sotiriou C, Chandramouli GV, Gershenson DM, Liu ET. Molecular determinants of tumor differentiation in papillary serous ovarian carcinoma. Mol Carcinog. 2003 Feb;36(2):53-9. [PubMed]
  22. Seykora JT, Jih D, Elenitsas R, Horng WH, Elder DE. Gene expression profiling of melanocytic lesions. Am J Dermatopathol. 2003 Feb;25(1):6-11. [PubMed]
  23. Giordano TJ, Thomas DG, Kuick R, Lizyness M, Misek DE, Smith AL, Sanders D, Aljundi RT, Gauger PG, Thompson NW, Taylor JM, Hanash SM. Distinct transcriptional profiles of adrenocortical tumors uncovered by DNA microarray analysis. Am J Pathol. 2003 Feb;162(2):521-31. [PubMed]
  24. De Vos S, Hofmann WK, Grogan TM, Krug U, Schrage M, Miller TP, Braun JG, Wachsman W, Koeffler HP, Said JW. Gene Expression Profile of Serial Samples of Transformed B-Cell Lymphomas. Lab Invest. 2003 Feb;83(2):271-285. [PubMed]
  25. Matsui H, Suzuki K, Hasumi M, Koike H, Okugi H, Nakazato H, Yamanaka H. Gene expression profiles of human BPH (II): Optimization of laser-capture microdissection and utilization of cDNA microarray. Anticancer Res. 2003 Jan-Feb;23(1A):195-200. [PubMed]
  26. Steenman M, Chen YW, Le Cunff M, Lamirault G, Varro A, Hoffman E, Leger JJ. Transcriptomal analysis of failing and nonfailing human hearts. Physiol Genomics. 2003 Jan 15;12(2):97-112. [PubMed]
  27. Risinger JI, Maxwell GL, Chandramouli GV, Jazaeri A, Aprelikova O, Patterson T, Berchuck A, Barrett JC. Microarray Analysis Reveals Distinct Gene Expression Profiles among Different Histologic Types of Endometrial Cancer. Cancer Res. 2003 Jan 1;63(1):6-11. [PubMed]
  28. Kobayashi T, Yamaguchi M, Kim S, Morikawa J, Ogawa S, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W. Microarray Reveals Differences in Both Tumors and Vascular Specific Gene Expression in de Novo CD5(+) and CD5(-) Diffuse Large B-Cell Lymphomas. Cancer Res. 2003 Jan 1;63(1):60-6. [PubMed]
  29. Lu J, Chua HH, Chen SY, Chen JY, Tsai CH. Regulation of matrix metalloproteinase-1 by epstein-barr virus proteins. Cancer Res. 2003 Jan 1;63(1):256-62. [PubMed]
  30. Kobayashi T, Yamaguchi M, Kim S, Morikawa J, Ogawa S, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W. Microarray Reveals Differences in Both Tumors and Vascular Specific Gene Expression in de Novo CD5(+) and CD5(-) Diffuse Large B-Cell Lymphomas. Cancer Res. 2003 Jan 1;63(1):60-6. [PubMed]
  31. Risinger JI, Maxwell GL, Chandramouli GV, Jazaeri A, Aprelikova O, Patterson T, Berchuck A, Barrett JC. Microarray Analysis Reveals Distinct Gene Expression Profiles among Different Histologic Types of Endometrial Cancer. Cancer Res. 2003 Jan 1;63(1):6-11. [PubMed]
  32. Steenbergen C, Afshari CA, Petranka JG, Collins J, Martin K, Bennett L, Haugen A, Bushel P, Murphy E. Alterations in Apoptotic Signaling in Human Idiopathic Cardiomyopathic Hearts in Failure. Am J Physiol Heart Circ Physiol 2003 Jan;284(1):H268-76 [PubMed]
  33. Kothapalli R, Bailey RD, Kusmartseva I, Mane S, Epling-Burnette PK, Loughran TP Jr. Constitutive expression of cytotoxic proteases and down-regulation of protease inhibitors in LGL leukemia. Int J Oncol. 2003 Jan;22(1):33-9. [PubMed]
  34. Dyrskjot L, Thykjaer T, Kruhoffer M, Jensen JL, Marcussen N, Hamilton-Dutoit S, Wolf H, ORntoft TF. Identifying distinct classes of bladder carcinoma using microarrays. Nat Genet. 2003 Jan;33(1):90-6. [PubMed][web supplement]
  35. Liotta LA, Kohn EC. Cancer's deadly signature. Nat Genet. 2003 Jan;33(1):10-1. [PubMed]
  36. Ramaswamy S, Ross KN, Lander ES, Golub TR. A molecular signature of metastasis in primary solid tumors. Nat Genet. 2003 Jan;33(1):49-54. [PubMed]
  37. Zhou J, Zhao LQ, Xiong MM, Wang XQ, Yang GR, Qiu ZL, Wu M, Liu ZH. Gene expression profiles at different stages of human esophageal squamous cell carcinoma. World J Gastroenterol. 2003 Jan;9(1):9-15. [PubMed]
  38. Xin W, Rhodes DR, Ingold C, Chinnaiyan AM, Rubin MA. Dysregulation of the annexin family protein family is associated with prostate cancer progression. Am J Pathol. 2003 Jan;162(1):255-61. [PubMed]
  39. Sanchez-Carbayo M. Use of high-throughput DNA microarrays to identify biomarkers for bladder cancer. Clin Chem. 2003 Jan;49(1):23-31. [PubMed]
  40. Hernan R, Fasheh R, Calabrese C, Frank AJ, Maclean KH, Allard D, Barraclough R, Gilbertson RJ. ERBB2 Up-Regulates S100A4 and Several other Prometastatic Genes in Medulloblastoma. Cancer Res. 2003 Jan;63(1):140-148. [PubMed]
  41. Le QT, Sutphin PD, Raychaudhuri S, Yu SC, Terris DJ, Lin HS, Lum B, Pinto HA, Koong AC, Giaccia AJ. Identification of osteopontin as a prognostic plasma marker for head and neck squamous cell carcinomas. Clin Cancer Res. 2003 Jan;9(1):59-67. [PubMed]
  42. Rhoades K, Wong-Staal F. Inverse Genomics as a powerful tool to identify novel targets for the treatment of neurodegenerative diseases. Mech Ageing Dev. 2003 Jan;124(1):125-132. [PubMed]
  43. Ueda S, Mineta T, Suzuyama K, Furuta M, Shiraishi T, Tabuchi K. Biologic characterization of a secondary glioblastoma with extracranial progression and systemic metastasis. Neuro-oncol. 2003 Jan;5(1):14-8. [PubMed]
  44. Tsukahara T, Arahata K. A comparative gene expression analysis of Emery-Dreifuss muscular dystrophy using a cDNA microarray. Methods Mol Biol. 2003;217:253-62. [PubMed]
  45. Pang ZJ, Xing FQ. Comparative study on the expression of cytokine--receptor genes in normal and preeclamptic human placentas using DNA microarrays. J Perinat Med. 2003;31(2):153-62. [PubMed]
  46. Yoshida K, Ueno S, Iwao T, Yamasaki S, Tsuchida A, Ohmine K, Ohki R, Choi YL, Koinuma K, Wada T, Ota J, Yamashita Y, Chayama K, Sato K, Mano H. Screening of genes specifically activated in the pancreatic juice ductal cells from the patients with pancreatic ductal carcinoma. Cancer Sci. 2003 Mar;94(3):263-70. [PubMed]

Diagnosis, prognosis and clinical applications

  1. Weiss MM, Kuipers EJ, Postma C, Snijders AM, Siccama I, Pinkel D, Westerga J, Meuwissen SG, Albertson DG, Meijer GA. Genomic profiling of gastric cancer predicts lymph node status and survival. Oncogene. 2003 Mar 27;22(12):1872-9. [PubMed]
  2. Iizuka N, Oka M, Yamada-Okabe H, Nishida M, Maeda Y, Mori N, Takao T, Tamesa T, Tangoku A, Tabuchi H, Hamada K, Nakayama H, Ishitsuka H, Miyamoto T, Hirabayashi A, Uchimura S, Hamamoto Y. Oligonucleotide microarray for prediction of early intrahepatic recurrence of hepatocellular carcinoma after curative resection. Lancet. 2003 Mar 15;361(9361):923-9. [PubMed]
  3. Bertucci F, Viens P, Tagett R, Nguyen C, Houlgatte R, Birnbaum D. DNA arrays in clinical oncology: promises and challenges. Lab Invest. 2003 Mar;83(3):305-16. [PubMed]
  4. Perez-Enciso M, Tenenhaus M. Prediction of clinical outcome with microarray data: a partial least squares discriminant analysis (PLS-DA) approach. Hum Genet. 2003 Feb 27 [epub ahead of print] [PubMed]
  5. Schmidt U, Begley CG. Cancer diagnosis and microarrays. Int J Biochem Cell Biol. 2003 Feb;35(2):119-24. [PubMed]
  6. Tan Y, Li G, Zhao C, Wang J, Zhao H, Xue Y, Han M, Yang C. Expression of sorcin predicts poor outcome in acute myeloid leukemia. Leuk Res. 2003 Feb;27(2):125-31. [PubMed]
  7. Young AN, De Oliveira Salles PG, Lim SD, Cohen C, Petros JA, Marshall FF, Neish AS, Amin MB. Beta defensin-1, parvalbumin, and vimentin: a panel of diagnostic immunohistochemical markers for renal tumors derived from gene expression profiling studies using cDNA microarrays. Am J Surg Pathol. 2003 Feb;27(2):199-205. [PubMed]
  8. Gottsch JD, Seitzman GD, Margulies EH, Bowers AL, Michels AJ, Saha S, Jun AS, Stark WJ, Liu SH. Gene expression in donor corneal endothelium. Arch Ophthalmol. 2003 Feb;121(2):252-8. [PubMed]
  9. Cheek DJ, Cesan A. Genetic predictors of cardiovascular disease: the use of chip technology. J Cardiovasc Nurs. 2003 Jan-Mar;18(1):50-6. [PubMed]
  10. Yeatman TJ. The future of cancer management: translating the genome, transcriptome, and proteome. Ann Surg Oncol. 2003 Jan-Feb;10(1):7-14. [PubMed]
  11. Chun TW, Justement JS, Lempicki RA, Yang J, Dennis G Jr, Hallahan CW, Sanford C, Pandya P, Liu S, McLaughlin M, Ehler LA, Moir S, Fauci AS. Gene expression and viral prodution in latently infected, resting CD4+ T cells in viremic versus aviremic HIV-infected individuals. Proc Natl Acad Sci U S A. 2003 Jan 27 [epub ahead of print] [PubMed]
  12. Shaughnessy J, Barlogie B, Sawyer J, McCoy J, Fassas A, Zhan F, Bumm K, Epstein J, Anaissie E, Jagannath S, Vesole D, Siegel D, Desikan R, Munshi N, Badros A, Tian E, Zangari M, Jacobson J, Crowley J, Tricot G. Continuous absence of metaphase-defined cytogenetic abnormalities especially of chromosome 13 and hypodiploidy assures long-term survival in multiple myeloma treated with total therapy I: interpretation in the context of global gene expression. Blood. 2003 Jan 16 [epub ahead of print] [PubMed]
  13. Otsuka M, Aizaki H, Kato N, Suzuki T, Miyamura T, Omata M, Seki N. Differential cellular gene expression induced by hepatitis B and C viruses. Biochem Biophys Res Commun. 2003 Jan 10;300(2):443-7. [PubMed]
  14. Vastag B. Medical news & perspectives: gene chips inch toward the clinic. JAMA. 2003 Jan 8;289(2):155-9. [PubMed]
  15. Vastag B. Medical news & perspectives: john quackenbush talks about the clinical promise of genetic microarrays. JAMA. 2003 Jan 8;289(2):159-63. [PubMed]
  16. Simon R, Radmacher MD, Dobbin K, McShane LM. Pitfalls in the Use of DNA Microarray Data for Diagnostic and Prognostic Classification. J Natl Cancer Inst. 2003 Jan 1;95(1):14-18. [PubMed][web supplement][related documents]
  17. Schubert CM. Microarray to be used as routine clinical screen. Nat Med. 2003 Jan; 9:9 [PubMed]
  18. Oliveira AM, Fletcher JA. CHIPing Soft Tissue Tumors: Will the Paradigms Be Changed?: On: Nielsen T, West R, Linn S, et al. Molecular characterization of soft tissue tumors: a gene expression study. Lancet 2002; 359:1301-1307. Adv Anat Pathol. 2003 Jan;10(1):1-7. [PubMed]
  19. Yeatman TJ. The future of clinical cancer management: one tumor, one chip. Am Surg. 2003 Jan;69(1):41-4. [PubMed]
  20. Li H, Luan Y. Kernel Cox regression models for linking gene expression profiles to censored survival data. Pac Symp Biocomput. 2003;:65-76. [PubMed]
  21. Ruschpler P, Lorenz P, Eichler W, Koczan D, Hanel C, Scholz R, Melzer C, Thiesen HJ, Stiehl P. High CXCR3 expression in synovial mast cells associated with CXCL9 and CXCL10 expression in inflammatory synovial tissues of patients with rheumatoid arthritis. Arthritis Res Ther. 2003;5(5):R241-52. [PubMed]

Animal model studies

  1. Tellgren A, Wood TJ, Flores-Morales A, Torndal UB, Eriksson L, Norstedt G. Differentially expressed transcripts in neoplastic hepatic nodules and neonatal rat liver studied by cDNA microarray analysis. Int J Cancer. 2003 Mar 20;104(2):131-8. [PubMed]
  2. Marvanova M, Menager J, Bezard E, Bontrop RE, Pradier L, Wong G. Microarray analysis of nonhuman primates: validation of experimental models in neurological disorders. FASEB J. 2003 Mar 5 [epub ahead of print] [PubMed]
  3. Long Y, Zou L, Liu H, Lu H, Yuan X, Robertson CS, Yang K. Altered expression of randomly selected genes in mouse hippocampus after traumatic brain injury. J Neurosci Res. 2003 Mar 1;71(5):710-20. [PubMed]
  4. McBride MW, Carr FJ, Graham D, Anderson NH, Clark JS, Lee WK, Charchar FJ, Brosnan MJ, Dominiczak AF. Microarray analysis of rat chromosome 2 congenic strains. Hypertension. 2003 Mar;41(3 Pt 2):847-53. [PubMed]'
  5. Tang Y, Nee AC, Lu A, Ran R, Sharp FR. Blood genomic expression profile for neuronal injury. J Cereb Blood Flow Metab. 2003 Mar;23(3):310-9. [PubMed]
  6. Jeppesen PB, Gregersen S, Rolfsen SE, Jepsen M, Colombo M, Agger A, Xiao J, Kruhoffer M, oRntoft T, Hermansen K. Antihyperglycemic and blood pressure-reducing effects of stevioside in the diabetic Goto-Kakizaki rat. Metabolism. 2003 Mar;52(3):372-378. [PubMed]
  7. Yao PJ, Zhu M, Pyun EI, Brooks AI, Therianos S, Meyers VE, Coleman PD. Defects in expression of genes related to synaptic vesicle traffickingin frontal cortex of Alzheimer's disease. Neurobiol Dis. 2003 Mar;12(2):97-109. [PubMed]
  8. Roth A, Gill R, Certa U. Temporal and spatial gene expression patterns after experimental stroke in a rat model and characterization of PC4, a potential regulator of transcription. Mol Cell Neurosci. 2003 Mar;22(3):353-64. [PubMed]
  9. Guda K, Cui H, Garg S, Dong M, Nambiar PR, Achenie LE, Rosenberg DW. Multistage gene expression profiling in a differentially susceptible mouse colon cancer model. Cancer Lett. 2003 Feb 28;191(1):17-25. [PubMed]
  10. Edwards MG, Sarkar D, Klopp RG, Marrow JD, Weindruch RH, Prolla TA. Age-Related Impairment of the Transcriptional Responses to Oxidative Stress in the Mouse Heart. Physiol Genomics. 2003 Feb 25 [epub ahead of print] [PubMed]
  11. Holtz WA, O'Malley KL. Parkinsonian mimetics induce aspects of unfolded protein response in death of dopaminergic neurons. J Biol Chem. 2003 Feb 21 [epub ahead of print] [PubMed]
  12. Neiman PE, Grbic JJ, Polony TS, Kimmel R, Bowers SJ, Delrow J, Beemon KL. Functional genomic analysis reveals distinct neoplastic phenotypes associated with c-myb mutation in the bursa of Fabricius. Oncogene. 2003 Feb 20;22(7):1073-86. [PubMed]
  13. Onody A, Zvara A, Hackler L, Vi;gh L, Ferdinandy P, G Puskas L. Effect of classic preconditioning on the gene expression pattern of rat hearts: a DNA microarray study. FEBS Lett. 2003 Feb 11;536(1-3):35-40. [PubMed]
  14. Le Bouter S, Demolombe S, Chambellan A, Bellocq C, Aimond F, Toumaniantz G, Lande G, Siavoshian S, Baro I, Pond AL, Nerbonne JM, Leger JJ, Escande D, Charpentier F. Microarray analysis reveals complex remodeling of cardiac ion channel expression with altered thyroid status: relation to cellular and integrated electrophysiology. Circ Res. 2003 Feb 7;92(2):234-42. [PubMed]
  15. Mueller A, O'Rourke J, Grimm J, Guillemin K, Dixon MF, Lee A, Falkow S. Distinct gene expression profiles characterize the histopathological stages of disease in Helicobacter- induced mucosa-associated lymphoid tissue lymphoma. Proc Natl Acad Sci U S A 2003 Feb 4;100(3):1292-1297 [PubMed]
  16. Puskas LG, Kitajka K, Nyakas C, Barcelo-Coblijn G, Farkas T.  Short-term administration of omega 3 fatty acids from fish oil results in increased transthyretin transcription in old rat hippocampus. Proc Natl Acad Sci U S A. 2003 Feb 3 [epub ahead of print] [PubMed]
  17. Chugh SS, Whitesel S, Turner M, Roberts CT, Nagalla SR. Genetic basis for chamber-specific ventricular phenotypes in the rat infarct model. Cardiovasc Res. 2003 Feb;57(2):477-85. [PubMed]
  18. Mao JH, Balmain A.  Genomic approaches to identification of tumour-susceptibility genes using mouse models. Curr Opin Genet Dev. 2003 Feb; 13:14-19. [PubMed]
  19. McDowell SA, Gammon K, Zingarelli B, Bachurski CJ, Aronow BJ, Prows DR, Leikauf GD. Inhibition of Nitric Oxide Restores Surfactant Gene Expression following Nickel-Induced Acute Lung Injury. Am J Respir Cell Mol Biol. 2003 Feb;28(2):188-98. [PubMed]
  20. Mu J, Barton ER, Birnbaum MJ. Selective suppression of AMP-activated protein kinase in skeletal muscle: update on 'lazy mice'. Biochem Soc Trans. 2003 Feb;31(Pt 1):236-41. [PubMed]
  21. Lopez IP, Marti A, Milagro FI, Zulet Md Mde L, Moreno-Aliaga MJ, Martinez JA, De Miguel C. DNA microarray analysis of genes differentially expressed in diet-induced (cafeteria) obese rats. Obes Res. 2003 Feb;11(2):188-94. [PubMed]
  22. Ungvari Z, Csiszar A, Edwards JG, Kaminski PM, Wolin MS, Kaley G, Koller A. Increased Superoxide Production in Coronary Arteries in Hyperhomocysteinemia. Role of Tumor Necrosis Factor-{alpha}, NAD(P)H Oxidase, and Inducible Nitric Oxide Synthase. Arterioscler Thromb Vasc Biol. 2003 Feb 13 [epub ahead of print] [PubMed]
  23. Raghavendra Rao VL, Dhodda VK, Song G, Bowen KK, Dempsey RJ. Traumatic brain injury-induced acute gene expression changes in rat cerebral cortex identified by GeneChip analysis. J Neurosci Res. 2003 Jan 15;71(2):208-19. [PubMed]
  24. Campos AH, Zhao Y, Pollman MJ, Gibbons GH. DNA microarray profiling to identify angiotensin-responsive genes in vascular smooth muscle cells: potential mediators of vascular disease. Circ Res. 2003 Jan 10;92(1):111-8. [PubMed]
  25. Ebrahimi B, Dutia BM, Roberts KL, Garcia-Ramirez JJ, Dickinson P, Stewart JP, Ghazal P, Roy DJ, Nash AA. Transcriptome profile of murine gammaherpesvirus-68 lytic infection. J Gen Virol. 2003 Jan;84(Pt 1):99-109. [PubMed]
  26. Asha H, Nagy I, Kovacs G, Stetson D, Ando I, Dearolf CR. Analysis of ras-induced overproliferation in Drosophila hemocytes. Genetics. 2003 Jan;163(1):203-15. [PubMed]

In vitro studies

  1. Chaussabel D, Tolouei Semnani R, McDowell MA, Sacks D, Sher A, Nutman TB. Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites. Blood. 2003 Mar 27 [epub ahead of print] [PubMed]
  2. Ichiba T, Teshima T, Kuick R, Misek DE, Liu C, Takada Y, Maeda Y, Reddy P, Williams DL, Hanash SM, Ferrara JL. Early changes in gene expression profiles of hepatic GVHD uncovered by oligonucleotide microarrays. Blood. 2003 Mar 27 [epub ahead of print] [PubMed]
  3. Jimenez AI, Fernandez P, Dominguez O, Dopazo A, Sanchez-Cespedes M. Growth and Molecular Profile of Lung Cancer Cells Expressing Ectopic LKB1: Down-Regulation of the Phosphatidylinositol 3'-Phosphate Kinase/PTEN Pathway. Cancer Res. 2003 Mar 15;63(6):1382-8. [PubMed]
  4. Elliott RC, Miles MF, Lowenstein DH. Overlapping Microarray Profiles of Dentate Gyrus Gene Expression during Development- and Epilepsy-Associated Neurogenesis and Axon Outgrowth. J Neurosci. 2003 Mar 15;23(6):2218-27. [PubMed]
  5. Presneau N, Mes-Masson AM, Ge B, Provencher D, Hudson TJ, Tonin PN. Patterns of expression of chromosome 17 genes in primary cultures of normal ovarian surface epithelia and epithelial ovarian cancer cell lines. Oncogene. 2003 Mar 13;22(10):1568-79.  [PubMed]
  6. Su Z, Chen Y, Kang D, Chao W, Simm M, Volsky DJ, Fisher PB. Customized rapid subtraction hybridization (RaSH) gene microarrays identify overlapping expression changes in human fetal astrocytes resulting from human immunodeficiency virus-1 infection or tumor necrosis factor-alpha treatment. Gene. 2003 Mar 13;306:67-78. [PubMed]
  7. Bina J, Zhu J, Dziejman M, Faruque S, Calderwood S, Mekalanos J. ToxR regulon of Vibrio cholerae and its expression in vibrios shed by cholera patients. Proc Natl Acad Sci U S A 2003 Mar 4;100(5):2801-6 [PubMed][pdf]
  8. Huerta S, Harris DM, Jazirehi A, Bonavida B, Elashoff D, Livingston EH, Heber D. Gene expression profile of metastatic colon cancer cells resistant to cisplatin-induced apoptosis. Int J Oncol. 2003 Mar;22(3):663-70. [PubMed]
  9. Schnabl B, Purbeck CA, Choi YH, Hagedorn CH, Brenner D. Replicative senescence of activated human hepatic stellate cells is accompanied by a pronounced inflammatory but less fibrogenic phenotype. Hepatology. 2003 Mar;37(3):653-64. [PubMed]
  10. Li A, Zhu X, Brown B, Craft CM. Gene expression networks underlying retinoic Acid-induced differentiation of human retinoblastoma cells. Invest Ophthalmol Vis Sci. 2003 Mar;44(3):996-1007. [PubMed]
  11. Eskra L, Mathison A, Splitter G. Microarray Analysis of mRNA Levels from RAW264.7 Macrophages Infected with Brucella abortus. Infect Immun. 2003 Mar;71(3):1125-33. [PubMed]
  12. de la Fuente C, Wang L, Wang D, Deng L, Wu K, Li H, Stein LD, Denny T, Coffman F, Kehn K, Baylor S, Maddukuri A, Pumfery A, Kashanchi F. Paradoxical effects of a stress signal on pro- and anti-apoptotic machinery in HTLV-1 Tax expressing cells. Mol Cell Biochem. 2003 Mar;245(1-2):99-113. [PubMed]
  13. Plymate SR, Haugk KH, Sprenger CC, Nelson PS, Tennant MK, Zhang Y, Oberley LW, Zhong W, Drivdahl R, Oberley TD. Increased manganese superoxide dismutase (SOD-2) is part of the mechanism for prostate tumor suppression by Mac25/insulin-like growth factor binding-protein-related protein-1. Oncogene. 2003 Feb 20;22(7):1024-34. [PubMed]
  14. Voyich JM, Sturdevant DE, Braughton KR, Kobayashi SD, Lei B, Virtaneva K, Dorward DW, Musser JM, DeLeo FR. Genome-wide protective response used by group A Streptococcus to evade destruction by human polymorphonuclear leukocytes. Proc Natl Acad Sci U S A. 2003 Feb 18;100(4):1996-2001. [PubMed][pdf][web supplement]
  15. McGarvey TW, Nguyen T, Puthiyaveettil R, Tomaszewski JE, Malkowicz SB. TERE1, a novel gene affecting growth regulation in prostate carcinoma. Prostate. 2003 Feb 1;54(2):144-155. [PubMed]
  16. Cooper CR, Chay CH, Gendernalik JD, Lee HL, Bhatia J, Taichman RS, McCauley LK, Keller ET, Pienta KJ. Stromal factors involved in prostate carcinoma metastasis to bone. Cancer. 2003 Feb 1;97(3 Suppl):739-47. [PubMed]
  17. Hasina R, Hulett K, Bicciato S, Di Bello C, Petruzzelli GJ, Lingen MW. Plasminogen activator inhibitor-2: a molecular biomarker for head and neck cancer progression. Cancer Res. 2003 Feb 1;63(3):555-9. [PubMed]
  18. Xia M, Bumgarner RE, Lampe MF, Stamm WE. Chlamydia trachomatis Infection Alters Host Cell Transcription in Diverse Cellular Pathways. J Infect Dis. 2003 Feb 1;187(3):424-34. [PubMed]
  19. Izmailova E, Bertley FM, Huang Q, Makori N, Miller CJ, Young RA, Aldovini A. HIV-1 Tat reprograms immature dendritic cells to express chemoattractants for activated T cells and macrophages. Nat Med. 2003 Feb;9(2):191-7. [PubMed]
  20. Nolan TM, DiGirolamo N, Sachdev NH, Hampartzoumian T, Coroneo MT, Wakefield D. The role of ultraviolet irradiation and heparin-binding epidermal growth factor-like growth factor in the pathogenesis of pterygium. Am J Pathol. 2003 Feb;162(2):567-74. [PubMed]
  21. Lo WR, Rowlette LL, Caballero M, Yang P, Hernandez MR, Borras T. Tissue differential microarray analysis of dexamethasone induction reveals potential mechanisms of steroid glaucoma. Invest Ophthalmol Vis Sci. 2003 Feb;44(2):473-85. [PubMed]
  22. Yamagami H, Yamagami S, Inoki T, Amano S, Miyata K. The effects of proinflammatory cytokines on cytokine-chemokine gene expression profiles in the human corneal endothelium. Invest Ophthalmol Vis Sci. 2003 Feb;44(2):514-20. [PubMed]
  23. Sheeter D, Du P, Rought S, Richman D, Corbeil J. Surface CD4 Expression Modulated by a Cellular Factor Induced by HIV Type 1 Infection. AIDS Res Hum Retroviruses. 2003 Feb;19(2):117-23. [PubMed]
  24. Jeong JS, Lee SH, Jung KJ, Choi YC, Park WY, Kim IH, Kim SS. Hepatotoxin N-nitrosomorpholine-induced carcinogenesis in rat liver: ex vivo exploration of preneoplastic and neoplastic hepatocytes. Exp Mol Pathol. 2003 Feb;74(1):74-83. [PubMed]
  25. Van Der Westhuizen FH, Van Den Heuvel LP, Smeets R, Veltman JA, Pfundt R, Van Kessel AG, Ursing BM, Smeitink JA. Human mitochondrial complex I deficiency: investigating transcriptional responses by microarray. Neuropediatrics. 2003 Feb;34(1):14-22. [PubMed]
  26. Peiper M, Alldinger I, Heller R, Pilarsky C, Schumacher U, Knoefel WT, Heinecke A, Izbicki JR. Biological and molecular characterization of a new human ampullary cancer cell line. Anticancer Res. 2003 Jan-Feb;23(1A):291-8. [PubMed]
  27. de Lange R, Dimoudis N, Weidle UH. Identification of genes associated with enhanced metastasis of a large cell lung carcinoma cell line. Anticancer Res. 2003 Jan-Feb;23(1A):187-94. [PubMed]
  28. Yoo MS, Chun HS, Son JJ, DeGiorgio LA, Kim DJ, Peng C, Son JH. Oxidative stress regulated genes in nigral dopaminergic neuronal cells: correlation with the known pathology in Parkinson's disease. Brain Res Mol Brain Res. 2003 Jan 31;110(1):76-84. [PubMed]
  29. Virolle T, Krones-Herzig A, Baron V, Gregorio Gd G, Adamson ED, Mercola D. Egr1 promotes growth and survival of prostate cancer cells: identification of novel Egr1 target genes. J Biol Chem. 2003 Jan 29 [epub ahead of print] [PubMed]
  30. Goldberg SF, Miele ME, Hatta N, Takata M, Paquette-Straub C, Freedman LP, Welch DR. Melanoma Metastasis Suppression by Chromosome 6: Evidence for a Pathway Regulated by CRSP3 and TXNIP. Cancer Res. 2003 Jan 15;63(2):432-40. [PubMed]
  31. Biswas DK, Martin KJ, McAlister C, Cruz AP, Graner E, Dai SC, Pardee AB. Apoptosis Caused by Chemotherapeutic Inhibition of Nuclear Factor-kappaB Activation. Cancer Res. 2003 Jan 15;63(2):290-5. [PubMed]
  32. Liu L, Roberts AA, Ganz T. By IL-1 Signaling, Monocyte-Derived Cells Dramatically Enhance the Epidermal Antimicrobial Response to Lipopolysaccharide. J Immunol. 2003 Jan 1;170(1):575-580. [PubMed]
  33. Planey SL, Abrams MT, Robertson NM, Litwack G. Role of Apical Caspases and Glucocorticoid-regulated Genes in Glucocorticoid-induced Apoptosis of Pre-B Leukemic Cells. Cancer Res. 2003 Jan 1;63(1):172-8. [PubMed]
  34. Lu J, Chua HH, Chen SY, Chen JY, Tsai CH. Regulation of matrix metalloproteinase-1 by epstein-barr virus proteins. Cancer Res. 2003 Jan 1;63(1):256-62. [PubMed]
  35. Hernan R, Fasheh R, Calabrese C, Frank AJ, Maclean KH, Allard D, Barraclough R, Gilbertson RJ. ERBB2 up-regulates S100A4 and several other prometastatic genes in medulloblastoma. Cancer Res. 2003 Jan 1;63(1):140-8. [PubMed]
  36. Planey SL, Abrams MT, Robertson NM, Litwack G. Role of Apical Caspases and Glucocorticoid-regulated Genes in Glucocorticoid-induced Apoptosis of Pre-B Leukemic Cells. Cancer Res. 2003 Jan 1;63(1):172-8. [PubMed]
  37. Van 't Wout AB, Lehrman GK, Mikheeva SA, O'Keeffe GC, Katze MG, Bumgarner RE, Geiss GK, Mullins JI. Cellular Gene Expression upon Human Immunodeficiency Virus Type 1 Infection of CD4(+)-T-Cell Lines. J Virol. 2003 Jan;77(2):1392-402. [PubMed]
  38. Jones JO, Arvin AM. Microarray Analysis of Host Cell Gene Transcription in Response to Varicella-Zoster Virus Infection of Human T Cells and Fibroblasts In Vitro and SCIDhu Skin Xenografts In Vivo. J Virol. 2003 Jan;77(2):1268-80. [PubMed]
  39. Baldwin DN, Vanchinathan V, Brown PO, Theriot JA. A gene-expression program reflecting the innate immune response of cultured intestinal epithelial cells to infection by Listeria monocytogenes. Genome Biol. 2003 Jan;4(1):R2. [PubMed][pdf]
  40. Nam JH, Hwang KA, Yu CH, Kang TH, Shin JY, Choi WY, Kim IB, Joo YR, Cho HW, Park KY. Expression of interferon inducible genes following Hantaan virus infection as a mechanism of resistance in A549 cells. Virus Genes. 2003 Jan;26(1):31-8. [PubMed]
  41. Buntinx M, Vanderlocht J, Hellings N, Vandenabeele F, Lambrichts I, Raus J, Ameloot M, Stinissen P, Steels P. Characterization of three human oligodendroglial cell lines as a model to study oligodendrocyte injury: Morphology and oligodendrocyte-specific gene expression. J Neurocytol. 2003 Jan;32(1):25-38. [PubMed]
  42. Krishnan AV, Peehl DM, Feldman D. Inhibition of prostate cancer growth by vitamin D: Regulation of target gene expression. J Cell Biochem. 2003;88(2):363-71. [PubMed]
  43. Casey RC, Oegema TR Jr, Skubitz KM, Pambuccian SE, Grindle SM, Skubitz AP. Cell membrane glycosylation mediates the adhesion, migration, and invasion of ovarian carcinoma cells. Clin Exp Metastasis. 2003;20(2):143-52. [PubMed]
  44. Ng LC, Forslund O, Koh S, Kuoppa K, Sjostedt A. The response of murine macrophages to infection with Yersinia pestis as revealed by DNA microarray analysis. Adv Exp Med Biol. 2003;529:155-60. [PubMed]
  45. Galey D, Becker K, Haughey N, Kalehua A, Taub D, Woodward J, Mattson M, Nath A. Differential Transcriptional Regulation by Human Immunodeficiency Virus Type 1 and gp120 in Human Astrocytes. J Neurovirol. 2003;9(3):358-371. [PubMed]
  46. Chen Z, Zhang K, Zhang X, Yuan XH, Yuan Z, Jin L, Xiong M. Comparison of gene expression between metastatic derivatives and their poorly metastatic parental cells implicates crucial tumor-environment interaction in metastasis of head and neck squamous cell carcinoma. Clin Exp Metastasis. 2003;20(4):335-42. [PubMed]
  47. Holloway S, Davis M, Jaber R, Fleming J. A Clinically Relevant Model of Human Pancreatic Adenocarcinoma Identifies Patterns of Metastasis Associated with Alterations of the TGF-beta/Smad4 Signaling Pathway. Int J Gastrointest Cancer. 2003;33(1):61-70. [PubMed]

Basic science studies

  1. Meneghini MD, Wu M, Madhani HD. Conserved Histone Variant H2A.Z Protects Euchromatin from the Ectopic Spread of Silent Heterochromatin. Cell 2003 Mar 7; 112: 725-736. [PubMed]
  2. Panda S, Sato TK, Hampton GM, Hogenesch JB. An array of insights: application of DNA chip technology in the study of cell biology. Trends Cell Biol. 2003 Mar;13(3):151-6. [PubMed]
  3. Richards B, Karpilow J, Dunn C, Peterson I, Maxfield A, Zharkikh L, Abedi M, Hurlburt A, Hardman J, Hsu F, Li W, Rebentisch M, Sandrock R, Sandrock T, Kamb A, Teng DH. Genetic selection for modulators of a retinoic-Acid-responsive reporter in human cells. Genetics. 2003 Mar;163(3):1047-60. [PubMed]
  4. Hieronymus H, Silver PA. Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery. Nat Genet. 2003 Feb;33(2):155-61. [PubMed][web supplement]
  5. McCune HJ, Donaldson AD. DNA replication: telling time with microarrays. Genome Biol. 2003 Feb;4(2):204. [PubMed]]
  6. Muljo SA, Schlissel MS. A small molecule Abl kinase inhibitor induces differentiation of Abelson virus-transformed pre-B cell lines. Nat Immunol 2003 Jan;4(1):31-37 [PubMed]
  7. Anderle P, Rakhmanova V, Woodford K, Zerangue N, Sadee W. Messenger RNA expression of transporter and ion channel genes in undifferentiated and differentiated Caco-2 cells compared to human intestines. Pharm Res. 2003 Jan;20(1):3-15. [PubMed]
  8. Hu D. Microarray data analysis in studies of membrane transporters. Methods Mol Biol. 2003;227:71-84. [PubMed]
  9. Gibran NS, Isik FF. Use of high-throughput microarray membranes for cDNA analysis of cutaneous wound repair. Methods Mol Med. 2003;78:425-32. [PubMed]
  10. Razzouk S, Shapiro IM. Detection of apoptotic gene expression in human osteoblast-like cells by cDNA microarrays. J Bone Miner Metab. 2003;21(5):261-7. [PubMed]
  11. Hamajima S, Hiratsuka K, Kiyama-Kishikawa M, Tagawa T, Kawahara M, Ohta M, Sasahara H, Abiko Y. Effect of low-level laser irradiation on osteoglycin gene expression in osteoblasts. Lasers Med Sci. 2003;18(2):78-82. [PubMed]
  12. Boado RJ. Blood-brain barrier genomics. Methods Mol Med. 2003;89:401-18. [PubMed]
  13. Marroni M, Kight KM, Hossain M, Cucullo L, Desai SY, Janigro D. Dynamic in vitro model of the blood-brain barrier. Gene profiling using cDNA microarray analysis. Methods Mol Med. 2003;89:419-34. [PubMed]
  14. Luo Y, Cai J, Ginis I, Sun Y, Lee S, Yu SX, Hoke A, Rao M. Designing, testing, and validating a focused stem cell microarray for characterization of neural stem cells and progenitor cells. Stem Cells. 2003;21(5):575-87. [PubMed]

Gene product function

  1. Hikkel I, Lucau-Danila A, Delaveau T, Marc P, Devaux F, Jacq C. A general strategy to uncover transcription factor properties identifies a new regulator of drug resistance in yeast. J Biol Chem. 2003 Mar 28; 278: 11427-11432 [PubMed]
  2. Uryu S, Tokuhiro S, Oda T. beta-Amyloid-specific upregulation of stearoyl coenzyme A desaturase-1 in macrophages. Biochem Biophys Res Commun. 2003 Mar 28;303(1):302-5. [PubMed]
  3. Rosenfeld JM, Vargas R Jr, Xie W, Evans RM. Genetic Profiling Defines the Xenobiotic Gene Network Controlled by the Nuclear Receptor PXR. Mol Endocrinol. 2003 Mar 27 [epub ahead of print] [PubMed]
  4. Braam B, Allen P, Benes E, Koomans HA, Navar LG, Hammond T. Human proximal tubular cell responses to angiotensin II analyzed using DNA microarray. Eur J Pharmacol. 2003 Mar 19;464(2-3):87-94. [PubMed]
  5. Vasseur S, Malicet C, Calvo EL, Labrie C, Berthezene P, Dagorn JC, Iovanna JL. Gene expression profiling by DNA microarray analysis in mouse embryonic fibroblasts transformed by rasV12 mutated protein and the E1A oncogene. Mol Cancer. 2003 Mar 19;2(1):19. [PubMed][pdf]
  6. Beltran S, Blanco E, Serras F, Perez-Villamil B, Guigo R, Artavanis-Tsakonas S, Corominas M. Transcriptional network controlled by the trithorax-group gene ash2 in Drosophila melanogaster. Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3293-3298. [PubMed][pdf][web supplement]
  7. Wells J, Yan PS, Cechvala M, Huang T, Farnham PJ. Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase. Oncogene. 2003 Mar 13;22(10):1445-60.  [PubMed]
  8. Beltran S, Blanco E, Serras F, Perez-Villamil B, Guigo R, Artavanis-Tsakonas S, Corominas M. Transcriptional network controlled by the trithorax-group gene ash2 in Drosophila melanogaster. Proc Natl Acad Sci U S A 2003 Mar 18;100(6):3293-8 [PubMed][pdf]
  9. Kuo ML, Duncavage EJ, Mathew R, den Besten W, Pei D, Naeve D, Yamamoto T, Cheng C, Sherr CJ, Roussel MF. Arf induces p53-dependent and -independent antiproliferative genes. Cancer Res. 2003 Mar 1;63(5):1046-53. [PubMed]
  10. Cayirlioglu P, Ward WO, Silver Key SC, Duronio RJ. Transcriptional Repressor Functions of Drosophila E2F1 and E2F2 Cooperate To Inhibit Genomic DNA Synthesis in Ovarian Follicle Cells. Mol Cell Biol. 2003 Mar;23(6):2123-34. [PubMed]
  11. McCord R, Pierce M, Xie J, Wonkatal S, Mickel C, Vershon AK. Rfm1, a novel tethering factor required to recruit the hst1 histone deacetylase for repression of middle sporulation genes. Mol Cell Biol. 2003 Mar;23(6):2009-16. [PubMed]
  12. Lee SW, Kwak HB, Chung WJ, Cheong H, Kim HH, Lee ZH. Participation of protein kinase c beta in osteoclast differentiation and function. Bone. 2003 Mar;32(3):217-27. [PubMed]
  13. Magee JA, Abdulkadir SA, Milbrandt J. Haploinsufficiency at the Nkx3.1 locus. A paradigm for stochastic, dosage-sensitive gene regulation during tumor initiation. Cancer Cell. 2003 Mar;3(3):273-83. [PubMed]
  14. Hakansson S, Behrens K, Marko-Varga G, Lindberg H, Pierrou S, Koopmann W. Identification of genes and proteins regulated by interleukin-5 in human eosinophils using microarrays and two-dimensional electrophoresis/mass spectrometry. Chest. 2003 Mar;123(3 Suppl):374S. [PubMed]
  15. Chen X, Whitney EM, Gao SY, Yang VW. Transcriptional Profiling of Kruppel-like Factor 4 Reveals a Function in Cell Cycle Regulation and Epithelial Differentiation. J Mol Biol. 2003 Feb 21;326(3):665-77. [PubMed]
  16. Chen F, Ogawa K, Nagarajan RP, Zhang M, Kuang C, Chen Y. Regulation of TG-interacting factor by transforming growth factor-beta. Biochem J. 2003 Feb 20 [epub ahead of print] [PubMed]
  17. Witcher M, Ross DT, Rousseau C, Deluca L, Miller WH. Synergy between all trans retinoic acid and tumor necrosis factor pathways in acute leukaemia cells. Blood. 2003 Feb 13 [epub ahead of print] [PubMed]
  18. Ohdate H, Lim CR, Kokubo T, Matsubara KI, Kimata Y, Kohno K. Impairment of the DNA-binding activity of the TATA-binding protein (TBP) renders the transcriptional function of Rvb2p/Tih2p, the yeast RuvB-like protein, essential for cell growth. J Biol Chem. 2003 Feb 6 [epub ahead of print] [PubMed]
  19. McGarvey TW, Nguyen T, Puthiyaveettil R, Tomaszewski JE, Malkowicz SB. TERE1, a novel gene affecting growth regulation in prostate carcinoma. Prostate. 2003 Feb 1;54(2):144-155. [PubMed]
  20. Nakagawa T, Abe M, Yamazaki T, Miyashita H, Niwa H, Kokubun S, Sato Y. HEX acts as a negative regulator of angiogenesis by modulating the expression of angiogenesis-related gene in endothelial cells in vitro. Arterioscler Thromb Vasc Biol. 2003 Feb 1;23(2):231-7. [PubMed]
  21. Lindberg MK, Moverare S, Skrtic S, Gao H, Dahlman-Wright K, Gustafsson JA, Ohlsson C. Estrogen Receptor (ER)-beta Reduces ERalpha-Regulated Gene Transcription, Supporting a "Ying Yang" Relationship between ERalpha and ERbeta in Mice. Mol Endocrinol. 2003 Feb;17(2):203-8. [PubMed]
  22. Norman LP, Jiang W, Han X, Saunders TL, Bond JS. Targeted disruption of the meprin Beta gene in mice leads to underrepresentation of knockout mice and changes in renal gene expression profiles. Mol Cell Biol. 2003 Feb;23(4):1221-30. [PubMed]
  23. Voisey J, Kelly G, Van Daal A. Agouti signal protein regulation in human melanoma cells. Pigment Cell Res. 2003 Feb;16(1):65-71. [PubMed]
  24. Yurovsky VV. Tumor necrosis factor-related apoptosis-inducing ligand enhances collagen production by human lung fibroblasts. Am J Respir Cell Mol Biol. 2003 Feb;28(2):225-31. [PubMed]
  25. Yamazaki K, Yamada E, Kanaji Y, Yanagisawa T, Kato Y, Takano K, Obara T, Sato K. Genes regulated by thyrotropin and iodide in cultured human thyroid follicles: analysis by cDNA microarray. Thyroid. 2003 Feb;13(2):149-58. [PubMed]
  26. Scott KK, Norris RA, Potter SS, Norrington DW, Baybo MA, Hicklin DM, Kern MJ. GeneChip microarrays facilitate identification of Protease Nexin-1 as a target gene of the Prx2 (S8) homeoprotein. DNA Cell Biol. 2003 Feb;22(2):95-105. [PubMed]
  27. Virolle T, Krones-Herzig A, Baron V, Gregorio Gd G, Adamson ED, Mercola D. Egr1 promotes growth and survival of prostate cancer cells: identification of novel Egr1 target genes. J Biol Chem. 2003 Jan 29 [epub ahead of print] [PubMed]
  28. Rushton JJ, Davis LM, Lei W, Mo X, Leutz A, Ness SA. Distinct changes in gene expression induced by A-Myb, B-Myb and c-Myb proteins. Oncogene. 2003 Jan 16;22(2):308-13. [PubMed]
  29. Lim FL, Hayes A, West AG, Pic-Taylor A, Darieva Z, Morgan BA, Oliver SG, Sharrocks AD. Mcm1p-Induced DNA Bending Regulates the Formation of Ternary Transcription Factor Complexes. Mol Cell Biol. 2003 Jan 15;23(2):450-461. [PubMed]
  30. Soon LL, Yie TA, Shvarts A, Levine AJ, Su F, Tchou-Wong KM. Overexpression of WISP-1 downregulated motility and invasion of lung cancer cells through inhibition of Rac activation. J Biol Chem. 2003 Jan 15 [epub ahead of print] [PubMed]
  31. Katsuma S, Hada Y, Shiojima S, Hirasawa A, Tanoue A, Takagaki K, Ohgi T, Yano J, Tsujimoto G. Transcriptional profiling of gene expression patterns during sphingosine 1-phosphate-induced mesangial cell proliferation. Biochem Biophys Res Commun. 2003 Jan 10;300(2):577-84. [PubMed]
  32. Campos AH, Zhao Y, Pollman MJ, Gibbons GH. DNA microarray profiling to identify Angiotensin-responsive genes in vascular smooth muscle cells: potential mediators of vascular disease. Circ Res. 2003 Jan 10;92(1):111-8. [PubMed]
  33. Kumar-Sinha C, Ignatoski KW, Lippman ME, Ethier SP, Chinnaiyan AM. Transcriptome analysis of HER2 reveals a molecular connection to fatty acid synthesis. Cancer Res. 2003 Jan 1;63(1):132-9. [PubMed]
  34. Cheng LJ, Li JM, Chen J, Ge YH, Yu ZR, Han DS, Zhou ZM, Sha JH. NYD-SP16, a Novel Gene Associated with Spermatogenesis of Human Testis. Biol Reprod. 2003 Jan;68(1):190-198. [PubMed]
  35. Brudler R, Hitomi K, Daiyasu H, Toh H, Kucho K, Ishiura M, Kanehisa M, Roberts VA, Todo T, Tainer JA, Getzoff ED. Identification of a New Cryptochrome Class: Structure, Function, and Evolution. Mol Cell. 2003 Jan; 11:59-67. [PubMed][web supplement]
  36. Liang XB, Zhang H, Zhou AY, Wang HY. Screening for functional genes related to a novel gene, AngRem104, in human mesangial cells by cDNA microarray. Biotechnol Lett. 2003 Jan;25(2):139-42. [PubMed]
  37. Amundson S, Fornace A. Microarray approaches for analysis of tumor suppressor gene function. Methods Mol Biol. 2003;223:141-54. [PubMed]
  38. Dupont J, Dunn SE, Barrett JC, LeRoith D. Microarray analysis and identification of novel molecules involved in insulin-like growth factor-1 receptor signaling and gene expression. Recent Prog Horm Res. 2003;58:325-42. [PubMed]
  39. Junger MA, Rintelen F, Stocker H, Wasserman JD, Vegh M, Radimerski T, Greenberg ME, Hafen E. The Drosophila Forkhead transcription factor FOXO mediates the reduction in cell number associated with reduced insulin signaling. J Biol. 2003 [Epub ahead of print] [PubMed][pdf]

General Physiology

  1. Ho M, Yang E, Matcuck G, Deng D, Sampas N, Tsalenko A, Tabibiazar R, Zhang Y, Chen M, Talbi S, Ho YD, Wang J, Tsao PS, Ben-Dor A, Yakhini Z, Bruhn L, Quertermous T. Identification of endothelial cell genes by combined database mining and microarray analysis. Physiol Genomics. 2003 Mar 18 [epub ahead of print] [PubMed]
  2. Ghorbel MT, Sharman G, Leroux M, Barrett T, Donovan DM, Becker KG, Murphy D. Microarray analysis reveals interleukin 6 as a novel secretory product of the hypothalamo-neurohypophyseal system. J Biol Chem. 2003 Mar 14 [epub ahead of print] [PubMed]
  3. Bondjers C, Kalen M, Hellstrom M, Scheidl SJ, Abramsson A, Renner O, Lindahl P, Cho H, Kehrl J, Betsholtz C. Transcription Profiling of Platelet-Derived Growth Factor-B-Deficient Mouse Embryos Identifies RGS5 as a Novel Marker for Pericytes and Vascular Smooth Muscle Cells. Am J Pathol. 2003 Mar;162(3):721-9. [PubMed]
  4. Wiedmann S, Eudy JD, Zempleni J. Biotin Supplementation Increases Expression of Genes Encoding Interferon-gamma, Interleukin-1beta, and 3-Methylcrotonyl-CoA Carboxylase, and Decreases Expression of the Gene Encoding Interleukin-4 in Human Peripheral Blood Mononuclear Cells. J Nutr. 2003 Mar;133(3):716-9. [PubMed]
  5. Hittel DS, Kraus WE, Hoffman EP. Skeletal muscle dictates the fibrinolytic state after exercise training in overweight men with characteristics of metabolic syndrome. J Physiol. 2003 Feb 28 [epub ahead of print] [PubMed]
  6. Van Huizen R, Martindale JL, Gorospe M, Holbrook NJ. P58IPK, a novel ER stress-inducible protein and potential negative regulator of eIF2a signaling. J Biol Chem. 2003 Feb 24 [epub ahead of print] [PubMed]
  7. Srisuma S, Biswal SS, Mitzner WA, Gallagher SJ, Mai KH, Wagner EM. Identification of Genes Promoting Angiogenesis in Mouse Lung by Transcriptional Profiling. Am J Respir Cell Mol Biol. 2003 Feb 14 [epub ahead of print] [PubMed]
  8. Dubnau J, Chiang AS, Grady L, Barditch J, Gossweiler S, McNeil J, Smith P, Buldoc F, Scott R, Certa U, Broger C, Tully T. The staufen/pumilio Pathway Is Involved in Drosophila Long-Term Memory. Curr Biol. 2003 Feb 18;13(4):286-96. [PubMed]
  9. Qiao R, Zhou B, Liebler JM, Li X, Crandall ED, Borok Z. IDENTIFICATION OF THREE GENES OF KNOWN FUNCTION EXPRESSED BY ALVEOLAR EPITHELIAL TYPE I CELLS. Am J Respir Cell Mol Biol. 2003 Feb 14 [epub ahead of print] [PubMed]
  10. Le Bouter S, Demolombe S, Chambellan A, Bellocq C, Aimond F, Toumaniantz G, Lande G, Siavoshian S, Baro I, Pond AL, Nerbonne JM, Leger JJ, Escande D, Charpentier F. Microarray analysis reveals complex remodeling of cardiac ion channel expression with altered thyroid status: relation to cellular and integrated electrophysiology. Circ Res. 2003 Feb 7;92(2):234-42. [PubMed]
  11. Zhao H, Miller M, Pfeiffer K, Buras JA, Stahl GL. Anoxia and reoxygenation of human endothelial cells decreases ceramide glucosyltransferase expression and activates caspases. FASEB J. 2003 Feb 5 [epub ahead of print] [PubMed]
  12. Nakagawa T, Abe M, Yamazaki T, Miyashita H, Niwa H, Kokubun S, Sato Y. HEX acts as a negative regulator of angiogenesis by modulating the expression of angiogenesis-related gene in endothelial cells in vitro. Arterioscler Thromb Vasc Biol. 2003 Feb 1;23(2):231-7. [PubMed]
  13. Lindberg MK, Moverare S, Skrtic S, Gao H, Dahlman-Wright K, Gustafsson JA, Ohlsson C. Estrogen Receptor (ER)-beta Reduces ERalpha-Regulated Gene Transcription, Supporting a "Ying Yang" Relationship between ERalpha and ERbeta in Mice. Mol Endocrinol. 2003 Feb;17(2):203-8. [PubMed]
  14. Wilson-Fritch L, Burkart A, Bell G, Mendelson K, Leszyk J, Nicoloro S, Czech M, Corvera S. Mitochondrial Biogenesis and Remodeling during Adipogenesis and in Response to the Insulin Sensitizer Rosiglitazone. Mol Cell Biol. 2003 Feb;23(3):1085-94. [PubMed]
  15. Telfeian AE, Tseng HC, Baybis M, Crino PB, Dichter MA. Differential Expression of GABA and Glutamate-receptor Subunits and Enzymes Involved in GABA Metabolism between Electrophysiologically Identified Hippocampal CA1 Pyramidal Cells and Interneurons. Epilepsia. 2003 Feb;44(2):143-9. [PubMed]
  16. Jelinsky SA, Harris HA, Brown EL, Flanagan K, Zhang X, Tunkey C, Lai K, Lane MV, Simcoe DK, Evans MJ. Global transcription profiling of estrogen activity: estrogen receptor alpha regulates gene expression in the kidney. Endocrinology. 2003 Feb;144(2):701-10. [PubMed]
  17. Yang YS, Song HD, Li RY, Zhou LB, Zhu ZD, Hu RM, Han ZG, Chen JL. The gene expression profiling of human visceral adipose tissue and its secretory functions. Biochem Biophys Res Commun. 2003 Jan 24;300(4):839-46. [PubMed]
  18. Mo R, Chen J, Han Y, Bueno-Cannizares C, Misek DE, Lescure PA, Hanash S, Yung RL. T cell chemokine receptor expression in aging. J Immunol. 2003 Jan 15;170(2):895-904. [PubMed]
  19. Miller MA, Ruest PJ, Kosinski M, Hanks SK, Greenstein D. An Eph receptor sperm-sensing control mechanism for oocyte meiotic maturation in Caenorhabditis elegans. Genes Dev. 2003 Jan 15;17(2):187-200. [PubMed]
  20. Mo R, Chen J, Han Y, Bueno-Cannizares C, Misek DE, Lescure PA, Hanash S, Yung RL. T cell chemokine receptor expression in aging. J Immunol. 2003 Jan 15;170(2):895-904. [PubMed]
  21. Campos AH, Zhao Y, Pollman MJ, Gibbons GH. DNA microarray profiling to identify Angiotensin-responsive genes in vascular smooth muscle cells: potential mediators of vascular disease. Circ Res. 2003 Jan 10;92(1):111-8. [PubMed]
  22. Visala Rao D, Boyle GM, Parsons PG, Watson K, Jones GL. Influence of ageing, heat shock treatment and in vivo total antioxidant status on gene-expression profile and protein synthesis in human peripheral lymphocytes. Mech Ageing Dev. 2003 Jan;124(1):55-69. [PubMed]
  23. McCormick SM, Frye SR, Eskin SG, Teng CL, Lu CM, Russell CG, Chittur KK, McIntire LV. Microarray analysis of shear stressed endothelial cells. Biorheology. 2003;40(1,2,3):5-11. [PubMed]
  24. Gao JJ, Diesl V, Wittmann T, Morrison DC, Ryan JL, Vogel SN, Follettie MT. Bacterial LPS and CpG DNA differentially induce gene expression profiles in mouse macrophages. J Endotoxin Res. 2003;9(4):237-43. [PubMed]

Development & Differentiation

  1. Nakamura T, Shiojima S, Hirai Y, Iwama T, Tsuruzoe N, Hirasawa A, Katsuma S, Tsujimoto G. Temporal gene expression changes during adipogenesis in human mesenchymal stem cells. Biochem Biophys Res Commun. 2003 Mar 28;303(1):306-12. [PubMed]
  2. Fleet JC, Wang L, Vitek O, Craig BA, Edenberg HJ. Gene expression profiling of Caco-2 BBe cells suggests a role for specific signaling pathways during intestinal differentiation. Physiol Genomics. 2003 Mar 18;13(1):57-68. [PubMed]
  3. Elliott RC, Miles MF, Lowenstein DH. Overlapping Microarray Profiles of Dentate Gyrus Gene Expression during Development- and Epilepsy-Associated Neurogenesis and Axon Outgrowth. J Neurosci. 2003 Mar 15;23(6):2218-27. [PubMed]
  4. Qi H, Aguiar DJ, Williams SM, La Pean A, Pan W, Verfaillie CM. Identification of genes responsible for osteoblast differentiation from human mesodermal progenitor cells. Proc Natl Acad Sci U S A. 2003 Mar 11 [epub ahead of print][PubMed][pdf]
  5. Spees JL, Olson SD, Ylostalo J, Lynch PJ, Smith J, Perry A, Peister A, Wang MY, Prockop DJ. Differentiation, cell fusion, and nuclear fusion during ex vivo repair of epithelium by human adult stem cells from bone marrow stroma. Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2397-402. [PubMed][pdf]
  6. Ma L, Zhao H, Deng XW. Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development. Development. 2003 Mar 1;130(5):969-981. [PubMed]
  7. Baugh LR, Hill AA, Slonim DK, Brown EL, Hunter CP. Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome. Development. 2003 Mar;130(5):889-900. [PubMed][web supplement]
  8. Chiang MK, Melton DA. Single-cell transcript analysis of pancreas development. Dev Cell. 2003 Mar;4(3):383-93. [PubMed]
  9. Lee SW, Kwak HB, Chung WJ, Cheong H, Kim HH, Lee ZH. Participation of protein kinase c beta in osteoclast differentiation and function. Bone. 2003 Mar;32(3):217-27. [PubMed]
  10. Butler MJ, Jacobsen TL, Cain DM, Jarman MG, Hubank M, Whittle JR, Phillips R, Simcox A. Discovery of genes with highly restricted expression patterns in the Drosophila wing disc using DNA oligonucleotide microarrays. Development. 2003 Feb 15;130(4):659-670. [PubMed][web supplement]
  11. Poguet AL, Legrand C, Feng X, Yen PM, Meltzer P, Samarut J, Flamant F. Microarray analysis of knockout mice identifies cyclin D2 as a possible mediator for the action of thyroid hormone during the postnatal development of the cerebellum. Dev Biol. 2003 Feb 15;254(2):188-99. [PubMed]
  12. Hedges JF, Cockrell D, Jackiw L, Meissner N, Jutila MA. Differential mRNA expression in circulating gammadelta T lymphocyte subsets defines unique tissue-specific functions. J Leukoc Biol. 2003 Feb;73(2):306-14. [PubMed]
  13. Ju XS, Hacker C, Madruga J, Kurz SM, Knespel S, Blendinger G, Rose-John S, Martin Z. Towards determining the differentiation program of antigen-presenting dendritic cells by transcriptional profiling. Eur J Cell Biol. 2003 Feb;82(2):75-86. [PubMed]
  14. Underhill GH, George D, Bremer EG, Kansas GS. Gene expression profiling reveals a highly specialized genetic program of plasma cells. Blood. 2003 Jan 23 [epub ahead of print] [PubMed]
  15. Miller MA, Ruest PJ, Kosinski M, Hanks SK, Greenstein D. An Eph receptor sperm-sensing control mechanism for oocyte meiotic maturation in Caenorhabditis elegans. Genes Dev. 2003 Jan 15;17(2):187-200. [PubMed]
  16. Kaplan F, Comber J, Sladek R, Hudson TJ, Muglia LJ, Macrae T, Gagnon S, Asada M, Brewer JA, Sweezey NB. The growth factor midkine is modulated by both glucocorticoid and retinoid in fetal lung development. Am J Respir Cell Mol Biol. 2003 Jan;28(1):33-41. [PubMed]
  17. Jochheim A, Cieslak A, Hillemann T, Cantz T, Scharf J, Manns MP, Ott M. Multi-stage analysis of differential gene expression in BALB/C mouse liver development by high-density microarrays. Differentiation. 2003 Jan;71(1):62-72. [PubMed]
  18. Handwerger S, Aronow B. Dynamic changes in gene expression during human trophoblast differentiation. Recent Prog Horm Res. 2003;58:263-81. [PubMed]
Neurobiology
  1. Leil TA, Ossadtchi A, Nichols TE, Leahy RM, Smith DJ. Genes regulated by learning in the hippocampus. J Neurosci Res. 2003 Mar 15;71(6):763-8. [PubMed]
  2. Elliott RC, Miles MF, Lowenstein DH. Overlapping Microarray Profiles of Dentate Gyrus Gene Expression during Development- and Epilepsy-Associated Neurogenesis and Axon Outgrowth. J Neurosci. 2003 Mar 15;23(6):2218-27. [PubMed]
  3. Griffin RS, Mills CD, Costigan M, Woolf CJ. Exploiting microarrays to reveal differential gene expression in the nervous system. Genome Biol. 2003 Feb;4(2):105. [PubMed]
  4. Mong JA, Devidze N, Frail DE, O'Connor LT, Samuel M, Choleris E, Ogawa S, Pfaff DW. Estradiol differentially regulates lipocalin-type prostaglandin D synthase transcript levels in the rodent brain: Evidence from high-density oligonucleotide arrays and in situ hybridization. Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):318-23. [PubMed][pdf]

Signal transduction
  1. Qin L, Qiu P, Wang L, Li X, Swarthout JT, Soteropoulos P, Tolias P, Partridge NC. Gene expression profiles and transcription factors involved in PTH signaling in osteoblasts revealed by microarray and bioinformatics. J Biol Chem. 2003 Mar 18 [epub ahead of print] [PubMed]
  2. Van Huizen R, Martindale JL, Gorospe M, Holbrook NJ. P58IPK, a novel ER stress-inducible protein and potential negative regulator of eIF2a signaling. J Biol Chem. 2003 Feb 24 [epub ahead of print] [PubMed]
  3. Chen F, Ogawa K, Nagarajan RP, Zhang M, Kuang C, Chen Y. Regulation of TG-interacting factor by transforming growth factor-beta. Biochem J. 2003 Feb 20 [epub ahead of print] [PubMed]
  4. Dubnau J, Chiang AS, Grady L, Barditch J, Gossweiler S, McNeil J, Smith P, Buldoc F, Scott R, Certa U, Broger C, Tully T. The staufen/pumilio Pathway Is Involved in Drosophila Long-Term Memory. Curr Biol. 2003 Feb 18;13(4):286-96. [PubMed]
  5. Jelinsky SA, Harris HA, Brown EL, Flanagan K, Zhang X, Tunkey C, Lai K, Lane MV, Simcoe DK, Evans MJ. Global transcription profiling of estrogen activity: estrogen receptor alpha regulates gene expression in the kidney. Endocrinology. 2003 Feb;144(2):701-10. [PubMed]
  6. Liu L, Roberts AA, Ganz T. By IL-1 Signaling, Monocyte-Derived Cells Dramatically Enhance the Epidermal Antimicrobial Response to Lipopolysaccharide. J Immunol. 2003 Jan 1;170(1):575-580. [PubMed]
  7. Planey SL, Abrams MT, Robertson NM, Litwack G. Role of Apical Caspases and Glucocorticoid-regulated Genes in Glucocorticoid-induced Apoptosis of Pre-B Leukemic Cells. Cancer Res. 2003 Jan 1;63(1):172-8. [PubMed]
  8. Kaplan F, Comber J, Sladek R, Hudson TJ, Muglia LJ, Macrae T, Gagnon S, Asada M, Brewer JA, Sweezey NB. The growth factor midkine is modulated by both glucocorticoid and retinoid in fetal lung development. Am J Respir Cell Mol Biol. 2003 Jan;28(1):33-41. [