My proteomics journal watch - year 2002 [ this week | 2004 Jul-Dec | 2004 Jan-Jun | 2003 Jul-Dec | 2003 Jan-Jun | 2002 | 2001 | 2000 | 1999 ]
General
2-d gel electrophoresis and mass spectroscopy applications in expression profiling
Protein-protein interaction
Application
Structural genomics
Technical issues and developments
Data analysis
Software
Database

* Protein chip related articles are put under the microarray section of My functional genomics journal watch

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General

  1. Hunter TC, Andon NL, Koller A, Yates JR, Haynes PA. The functional proteomics toolbox: methods and applications. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Dec 25;782(1-2):165-81. [PubMed]
  2. Koshland DE Jr, Hamadani K. Proteomics and Models for Enzyme Cooperativity. J Biol Chem. 2002 Dec 6;277(49):46841-46844. [PubMed]
  3. Seliger B, Kellner R. Design of proteome-based studies in combination with serology for the identification of biomarkers and novel targets. Proteomics. 2002 Dec;2(12):1641-51. [PubMed]
  4. Sica JM. Genomics and proteomics: the next generation of health care. Empl Benefits J. 2002 Dec;27(4):18-21. [PubMed]
  5. Aebersold R, Cravatt BF. Proteomics--advances, applications and the challenges that remain. Trends Biotechnol. 2002 Dec;20(12 Suppl):S1-2. [PubMed]
  6. Pardanani A, Wieben ED, Spelsberg TC, Tefferi A. Primer on medical genomics. Part IV: Expression proteomics. Mayo Clin Proc. 2002 Nov;77(11):1185-96. [PubMed]
  7. Govorun VM, Archakov AI. Proteomic technologies in modern biomedical science. Biochemistry (Mosc). 2002 Oct;67(10):1109-23. [PubMed]
  8. Hood L. A personal view of molecular technology and how it has changed biology. J Proteome Res. 2002 Sep-Oct;1(5):399-409. [PubMed]
  9. Butler D. NIH pledges cash for global protein database.  Nature. 2002 Sep 12;419(6903):101. [PubMed]
  10. Hubbard MJ. Functional proteomics: The goalposts are moving. Proteomics. 2002 Sep;2(9):1069-78. [PubMed]
  11. Hanash S. Samir Hanash discusses how HUPO aims to globalize proteomics research. Drug Discov Today. 2002 Aug 1;7(15):797-801. [PubMed]
  12. Wooley JC. The grand challenge: facing up to proteomics. Trends Biotechnol. 2002 Aug;20(8):316-7. [PubMed]
  13. Lopez-Otin C, Overall CM. Protease degradomics: A new challenge for proteomics. Nat Rev Mol Cell Biol. 2002 Jul;3(7):509-19. [PubMed]
  14. Aebersold R, Watts JD. The need for national centers for proteomics. Nat Biotechnol. 2002 Jul;20(7):651. [PubMed]
  15. Abbott A. Proteomics: The society of proteins. Nature. 2002 Jul;417(6892):894-6. [PubMed]
  16. Hochstrasser DF, Sanchez JC, Appel RD. Proteomics and its trends facing nature's complexity. Proteomics. 2002 Jul;2(7):807-12. [PubMed]
  17. Hanash S, Celis JE. The human proteome organization: a mission to advance proteome knowledge. Mol Cell Proteomics. 2002 Jun;1(6):413-4. [PubMed]
  18. Schaechter M, Ingraham JL. What limits genomics, proteomics, transcriptomics? Int Microbiol. 2002 Jun;5(2):51-2. [PubMed]
  19. Daniel H, Daniel H. Genomics and proteomics: importance for the future of nutrition research. Br J Nutr. 2002 May;87 Suppl 2:305-11. [PubMed]
  20. Yanagida M. Functional proteomics; current achievements. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 May 5;771(1-2):89-106. [PubMed]
  21. Kaiser J. Proteomics. Public-private group maps out initiatives.  Science. 2002 May 3;296(5569):827. [PubMed]
  22. Ng JH, Ilag LL. Functional proteomics: separating the substance from the hype. Drug Discov Today. 2002 May 1;7(9):504-505. [PubMed]
  23. Reynolds T. For proteomics research, a new race has begun. J Natl Cancer Inst. 2002 Apr 17;94(8):552-4. [PubMed]
  24. Hancock WS, Wu SL, Shieh P. The challenges of developing a sound proteomics strategy. Proteomics. 2002 Apr;2(4):352-9. [PubMed]
  25. Proteomics in a small world. Nat Struct Biol. 2002 Mar;9(3):153. [PubMed]
  26. Graves PR, Haystead TA. Molecular Biologist's Guide to Proteomics. Microbiol Mol Biol Rev. 2002 Mar;66(1):39-63. [PubMed]
  27. Chakravarti DN. From the decline and fall of protein chemistry to proteomics. Biotechniques. 2002 Mar;Suppl:2-3. [PubMed]
  28. Bradshaw RA. Proteomics - boom or bust? Mol Cell Proteomics. 2002 Mar;1(3):177-8. [PubMed]
  29. Rappsilber J, Mann M. What does it mean to identify a protein in proteomics? Trends Biochem Sci. 2002 Feb; 27:74-78 [PubMed]
  30. Van Oostrum J, Voshol H. The human genome: proteomics. Am J Psychiatry. 2002 Feb;159(2):208. [PubMed]
  31. Panisko EA, Conrads TP, Goshe MB, Veenstra TD. The postgenomic age. Characterization of proteomes. Exp Hematol. 2002 Feb;30(2):97-107. [PubMed]
  32. Roberts JK. Proteomics and a future generation of plant molecular biologists. Plant Mol Biol. 2002 Jan;48(1-2):143-54. [PubMed]
  33. Gentzel M, Kocher T, Wilm M. Proteomics in biological research: the challenge to make proteins speak. Ernst Schering Res Found Workshop. 2002;(38):167-89. [PubMed]
  34. Yarmush ML, Jayaraman A. Advances in proteomic technologies. Annu Rev Biomed Eng. 2002;4:349-73. [PubMed]

2-d gel electrophoresis and mass spectroscopy applications in expression profiling

  1. Hunter TC, Andon NL, Koller A, Yates JR, Haynes PA. The functional proteomics toolbox: methods and applications. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Dec 25;782(1-2):165-81. [PubMed]
  2. Fountoulakis M, Suter L. Proteomic analysis of the rat liver. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Dec 25;782(1-2):197-218. [PubMed]
  3. Thoren K, Gustafsson E, Clevnert A, Larsson T, Bergstrom J, Nilsson CL. Proteomic study of non-typable Haemophilus influenzae. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Dec 25;782(1-2):219-26. [PubMed]
  4. Liu H, Berger SJ, Chakraborty AB, Plumb RS, Cohen SA. Multidimensional chromatography coupled to electrospray ionization time-of-flight mass spectrometry as an alternative to two-dimensional gels for the identification and analysis of complex mixtures of intact proteins. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 Dec 25;782(1-2):267-89. [PubMed]
  5. Yoon HJ, Feoktistova A, Wolfe BA, Jennings JL, Link AJ, Gould KL. Proteomics analysis identifies new components of the fission and budding yeast anaphase-promoting complexes. Curr Biol. 2002 Dec 10;12(23):2048-54. [PubMed]
  6. Adam PJ, Boyd R, Tyson KL, Fletcher GC, Stamps A, Hudson L, Poyser HR, Redpath N, Griffiths M, Steers G, Harris AL, Patel S, Berry J, Loader JA, Townsend RR, Daviet L, Legrain P, Parekh R, Terrett JA. Comprehensive proteomic analysis of breast cancer cell membranes reveals unique proteins with potential roles in clinical cancer. J Biol Chem. 2002 Dec 10 [epub ahead of print][PubMed]
  7. Morrison C, Henzing AJ, Jensen ON, Osheroff N, Dodson H, Kandels-Lewis SE, Adams RR, Earnshaw WC. Proteomic analysis of human metaphase chromosomes reveals topoisomerase II alpha as an Aurora B substrate. Nucleic Acids Res. 2002 Dec 1;30(23):5318-27. [PubMed]
  8. Yan JX, Devenish AT, Wait R, Stone T, Lewis S, Fowler S. Fluorescence two-dimensional difference gel electrophoresis and mass spectrometry based proteomic analysis of Escherichia coli. Proteomics. 2002 Dec;2(12):1682-98. [PubMed]
  9. Kuwana R, Kasahara Y, Fujibayashi M, Takamatsu H, Ogasawara N, Watabe K. Proteomics characterization of novel spore proteins of Bacillus subtilis.  Microbiology. 2002 Dec;148(Pt 12):3971-82. [PubMed]
  10. Zolla L, Rinalducci S, Timperio AM, Huber CG. Proteomics of light-harvesting proteins in different plant species. Analysis and comparison by liquid chromatography-electrospray ionization mass spectrometry. Photosystem I. Plant Physiol. 2002 Dec;130(4):1938-50. [PubMed]
  11. Bernstein H. Development and molecular characterization of HCT-116 cell lines resistant to the tumor promoter and multiple stress-inducer, deoxycholate. Carcinogenesis. 2002 Dec;23(12):2063-80. [PubMed]
  12. Wulfkuhle JD, Sgroi DC, Krutzsch H, McLean K, McGarvey K, Knowlton M, Chen S, Shu H, Sahin A, Kurek R, Wallwiener D, Merino MJ, Petricoin EF 3rd, Zhao Y, Steeg PS. Proteomics of human breast ductal carcinoma in situ. Cancer Res. 2002 Nov 15;62(22):6740-9. [PubMed]
  13. She YM, Wang GQ, Loboda A, Ens W, Standing KG, Burczynski FJ. Sequencing of rat liver cytosolic proteins by matrix-assisted laser desorption ionization-quadrupole time-of-flight mass spectrometry following electrophoretic separation and extraction. Anal Biochem. 2002 Nov 15;310(2):137-147. [PubMed]
  14. Wulfkuhle JD, Sgroi DC, Krutzsch H, McLean K, McGarvey K, Knowlton M, Chen S, Shu H, Sahin A, Kurek R, Wallwiener D, Merino MJ, Petricoin EF 3rd, Zhao Y, Steeg PS. Proteomics of human breast ductal carcinoma in situ. Cancer Res. 2002 Nov 15;62(22):6740-9. [PubMed]
  15. Lian Z, Kluger Y, Greenbaum DS, Tuck D, Gerstein M, Berliner N, Weissman SM, Newburger PE. Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiation in the MPRO cell line. Blood. 2002 Nov 1;100(9):3209-3220. [PubMed]
  16. Mitterdorfer G, Mayer HK, Kneifel W, Viernstein H. Protein fingerprinting of Saccharomyces isolates with therapeutic relevance using one- and two-dimensional electrophoresis. Proteomics. 2002 Nov;2(11):1532-8. [PubMed]
  17. Fountoulakis M, Juranville JF, Dierssen M, Lubec G. Proteomic analysis of the fetal brain. Proteomics. 2002 Nov;2(11):1547-76. [PubMed]
  18. Bajo M, Fruehauf J, Kim SH, Fountoulakis M, Lubec G. Proteomic evaluation of intermediary metabolism enzyme proteins in fetal Down's syndrome cerebral cortex. Proteomics. 2002 Nov;2(11):1539-46. [PubMed]
  19. Man WJ, White IR, Bryant D, Bugelski P, Camilleri P, Cutler P, Heald G, Lord PG, Wood J, Kramer K. Protein expression analysis of drug-mediated hepatotoxicity in the Sprague-Dawley rat. Proteomics. 2002 Nov;2(11):1577-85. [PubMed]
  20. Gajendran N, Frey JR, Lefkovits I, Kuhn L, Fountoulakis M, Krapfenbauer K, Brenner HR. Proteomic analysis of secreted muscle components: Search for factors involved in neuromuscular synapse formation. Proteomics. 2002 Nov;2(11):1601-15. [PubMed]
  21. Levi-Schaffer F, Temkin V, Simon HU, Kettman JR, Frey JR, Lefkovits I. Proteomic analysis of human eosinophil activation mediated by mast cells, granulocyte macrophage colony stimulating factor and tumor necrosis factor alpha. Proteomics. 2002 Nov;2(11):1616-26. [PubMed]
  22. Behnam K, Murray SS, Whitelegge JP, Brochmann EJ. Identification of the molecular chaperone alpha B-crystallin in demineralized bone powder and osteoblast-like cells. J Orthop Res. 2002 Nov;20(6):1190-6. [PubMed]
  23. Ohta S, Shiomi Y, Sugimoto K, Obuse C, Tsurimoto T. A Proteomics Approach to Identify Proliferating Cell Nuclear Antigen (PCNA)-binding Proteins in Human Cell Lysates. IDENTIFICATION OF THE HUMAN CHL12/RFCs2-5 COMPLEX AS A NOVEL PCNA-BINDING PROTEIN. J Biol Chem. 2002 Oct 25;277(43):40362-40367. [PubMed]
  24. Bruno M, Borchers C, Dial J, Walker N, Hartis J, Wetmore B, Carl Barrett J, Tomer K, Alex Merrick B. Effects of TCDD upon IkappaB and IKK subunits localized in microsomes by proteomics. Arch Biochem Biophys. 2002 Oct 15;406(2):153. [PubMed]
  25. Misumi S, Fuchigami T, Takamune N, Takahashi I, Takama M, Shoji S. Three Isoforms of Cyclophilin A Associated with Human Immunodeficiency Virus Type 1 Were Found by Proteomics by Using Two-Dimensional Gel Electrophoresis and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry. J Virol. 2002 Oct 1;76(19):10000-10008. [PubMed]
  26. Arthur JM, Thongboonkerd V, Scherzer JA, Cai J, Pierce WM, Klein JB. Differential expression of proteins in renal cortex and medulla: A proteomic approach. Kidney Int. 2002 Oct;62(4):1314-21. [PubMed]
  27. Thongboonkerd V, McLeish KR, Arthur JM, Klein JB. Proteomic analysis of normal human urinary proteins isolated by acetone precipitation or ultracentrifugation. Kidney Int. 2002 Oct;62(4):1461-1469. [PubMed]
  28. Tsuji T, Shiozaki A, Kohno R, Yoshizato K, Shimohama S. Proteomic profiling and neurodegeneration in Alzheimer's disease. Neurochem Res. 2002 Oct;27(10):1245-53. [PubMed]
  29. Hathout Y, Riordan K, Gehrmann M, Fenselau C. Differential protein expression in the cytosol fraction of an MCF-7 breast cancer cell line selected for resistance toward melphalan. J Proteome Res. 2002 Sep-Oct;1(5):435-42. [PubMed]
  30. Whitelegge JP. Plant proteomics: BLASTing out of a MudPIT. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11564-6. [PubMed]
  31. Koller A, Washburn MP, Lange BM, Andon NL, Deciu C, Haynes PA, Hays L, Schieltz D, Ulaszek R, Wei J, Wolters D, Yates JR 3rd. Proteomic survey of metabolic pathways in rice. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11969-74. [PubMed][pdf][web supplement]
  32. Goodlett DR, Yi EC. Proteomics without polyacrylamide: qualitative and quantitative uses of tandem mass spectrometry in proteome analysis. Funct Integr Genomics. 2002 Sep;2(4-5):138-53. [PubMed]
  33. Dierick J, Eliaers F, Remacle J, Raes M, Fey S, Larsen P, Toussaint O. Stress-induced premature senescence and replicative senescence are different phenotypes, proteomic evidence. Biochem Pharmacol. 2002 Sep;64(5-6):1011. [PubMed]
  34. Cordwell SJ, Larsen MR, Cole RT, Walsh BJ. Comparative proteomics of Staphylococcus aureus and the response of methicillin-resistant and methicillin-sensitive strains to Triton X-100.  Microbiology. 2002 Sep;148(Pt 9):2765-81. [PubMed]
  35. Greene ND, Leung KY, Wait R, Begum S, Dunn MJ, Copp AJ. Differential protein expression at the stage of neural tube closure in the mouse embryo. J Biol Chem. 2002 Aug 27 [epub ahead of print][PubMed]
  36. Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD. Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags. Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11049-54. [PubMed][pdf][web supplement]
  37. Young NM, Brisson JR, Kelly J, Watson DC, Tessier L, Lanthier PH, Jarrell HC, Cadotte N, St Michael F, Aberg E, Szymanski CM. Structure of the N-linked glycan present on multiple glycoproteins in the gram-negative bacterium, campylobacter jejuni. J Biol Chem. 2002 Aug 16 [epub ahead of print] [PubMed]
  38. Castegna A, Aksenov M, Aksenova M, Thongboonkerd V, Klein J, Pierce W, Booze R, Markesbery W, Butterfield D. Proteomic identification of oxidatively modified proteins in alzheimer's disease brain. part I: creatine kinase BB, glutamine synthase, and ubiquitin carboxy-terminal hydrolase L-1. Free Radic Biol Med. 2002 Aug 15;33(4):562. [PubMed]
  39. Ohta S, Shiomi Y, Sugimoto K, Obuse C, Tsurimoto T. A proteomics approach to identify PCNA binding proteins in human cell lysates: identification of the human CHL12/RFCs2-5 complex as a novel PCNA binding protein.  J Biol Chem. 2002 Aug 8 [epub ahead of print] [PubMed]
  40. Baggerman G, Cerstiaens A, De Loof A, Schoofs L. Peptidomics of the larval Drosophila melanogaster central nervous system.  J Biol Chem. 2002 Aug 8 [epub ahead of print] [PubMed]
  41. Mader U, Homuth G, Scharf C, Buttner K, Bode R, Hecker M. Transcriptome and Proteome Analysis of Bacillus subtilis Gene Expression Modulated by Amino Acid Availability.  J Bacteriol. 2002 Aug 1;184(15):4288-4295. [PubMed]
  42. Li Y, Wei K, Lu C, Li Y, Li M, Xing G, Wei H, Wang Q, Chen J, Wu C, Chen H, Yang S, He F. Identification of hepatopoietin dimerization, its interacting regions and alternative splicing of its transcription. Eur J Biochem. 2002 Aug;269(16):3888-93. [PubMed]
  43. Agrawal GK, Rakwal R, Yonekura M, Kubo A, Saji H. Proteome analysis of differentially displayed proteins as a tool for investigating ozone stress in rice (Oryza sativa L.) seedlings. Proteomics. 2002 Aug;2(8):947-59. [PubMed]
  44. Schwertz H, Langin T, Platsch H, Richert J, Bomm S, Schmidt M, Hillen H, Blaschke G, Meyer J, Darius H, Buerke M. Two-dimensional analysis of myocardial protein expression following myocardial ischemia and reperfusion in rabbits. Proteomics. 2002 Aug;2(8):988-95. [PubMed]
  45. Thiede B, Siejak F, Dimmler C, Rudel T. Prediction of translocation and cleavage of heterogeneous ribonuclear proteins and Rho guanine nucleotide dissociation inhibitor 2 during apoptosis by subcellular proteome analysis. Proteomics. 2002 Aug;2(8):996-1006. [PubMed]
  46. El Fakhry Y, Ouellette M, Papadopoulou B. A proteomic approach to identify developmentally regulated proteins in Leishmania infantum. Proteomics. 2002 Aug;2(8):1007-17. [PubMed]
  47. Skynner HA, Rosahl TW, Knowles MR, Salim K, Reid L, Cothliff R, McAllister G, Guest PC. Alterations of stress related proteins in genetically altered mice revealed by two-dimensional differential in-gel electrophoresis analysis. Proteomics. 2002 Aug;2(8):1018-25. [PubMed]
  48. Journet A, Chapel A, Kieffer S, Roux F, Garin J. Proteomic analysis of human lysosomes: Application to monocytic and breast cancer cells. Proteomics. 2002 Aug;2(8):1026-40. [PubMed]
  49. Willemoes M, Kilstrup M, Roepstorff P, Hammer K. Proteome analysis of a Lactococcus lactis strain overexpressing gapA suggests that the gene product is an auxiliary glyceraldehyde 3-phosphate dehydrogenase. Proteomics. 2002 Aug;2(8):1041-6. [PubMed]
  50. Wagner MA, Eschenbrenner M, Horn TA, Kraycer JA, Mujer CV, Hagius S, Elzer P, DelVecchio VG. Global analysis of the Brucella melitensis proteome: Identification of proteins expressed in laboratory-grown culture. Proteomics. 2002 Aug;2(8):1047-60. [PubMed]
  51. Juan HF, Lin JY, Chang WH, Wu CY, Pan TL, Tseng MJ, Khoo KH, Chen ST. Biomic study of human myeloid leukemia cells differentiation to macrophages using DNA array, proteomic, and bioinformatic analytical methods. Electrophoresis. 2002 Aug;23(15):2490-2504. [PubMed]
  52. Singh SM, Zada AA, Hiddemann W, Tenen DG, Reddy VA, Behre G. Proteomic analysis of transcription factor interactions in myeloid stem cell development and leukaemia. Expert Opin Ther Targets. 2002 Aug;6(4):491-5. [PubMed]
  53. Rappsilber J, Mann M. Is mass spectrometry ready for proteome-wide protein expression analysis? Genome Biol. 2002 Jul 31;3(8):COMMENT2008. [PubMed]
  54. Kennedy S. The role of proteomics in toxicology: identification of biomarkers of toxicity by protein expression analysis. Biomarkers. 2002 Jul-Aug;7(4):269-90. [PubMed]
  55. Chen ST, Pan TL, Tsai YC, Huang CM. Proteomics reveals protein profile changes in doxorubicin - treated MCF-7 human breast cancer cells. Cancer Lett. 2002 Jul 8;181(1):95-107. [PubMed]
  56. Sanders SL, Jennings J, Canutescu A, Link AJ, Weil PA. Proteomics of the Eukaryotic Transcription Machinery: Identification of Proteins Associated with Components of Yeast TFIID by Multidimensional Mass Spectrometry. Mol Cell Biol. 2002 Jul;22(13):4723-38. [PubMed]
  57. Stocklin R, Binz PA. Challenges in mass spectrometry. Proteomics. 2002 Jul;2(7):825-7. [PubMed]
  58. Imam-Sghiouar N, Laude-Lemaire I, Labas V, Pflieger D, Le Caer JP, Caron M, Nabias DK, Joubert-Caron R. Subproteomics analysis of phosphorylated proteins: Application to the study of B-lymphoblasts from a patient with Scott syndrome. Proteomics. 2002 Jul;2(7):828-38. [PubMed]
  59. Sanchez JC, Converset V, Nolan A, Schmid G, Wang S, Heller M, Sennitt MV, Hochstrasser DF, Cawthorne MA. Effect of Rosiglitazone on the Differential Expression of Diabetes-associated Proteins in Pancreatic Islets of C57Bl/6 lep/lep Mice.  Mol Cell Proteomics. 2002 Jul;1(7):509-16. [PubMed]
  60. Grolleau A, Bowman J, Pradet-Balade B, Puravs E, Hanash S, Garcia-Sanz JA, Beretta L. Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics. J Biol Chem 2002 Jun 21;277(25):22175-84 [PubMed]
  61. Jebanathirajah JA, Andersen S, Blagoev B, Roepstorff P. A Rapid Screening Method to Monitor Expression of Recombinant Proteins from Various Prokaryotic and Eukaryotic Expression Systems Using Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry. Anal Biochem. 2002 Jun 15; 242-250. [PubMed]
  62. Molestina RE, Klein JB, Miller RD, Pierce WH, Ramirez JA, Summersgill JT. Proteomic Analysis of Differentially Expressed Chlamydia pneumoniae Genes during Persistent Infection of HEp-2 Cells.  Infect Immun. 2002 Jun;70(6):2976-2981. [PubMed]
  63. Badghisi H, Liebler DC. Sequence Mapping of Epoxide Adducts in Human Hemoglobin with LC-Tandem MS and the Salsa Algorithm. Chem Res Toxicol. 2002 Jun;15(6):799-805. [PubMed]
  64. Pucci-Minafra I, Fontana S, Cancemi P, Alaimo G, Minafra S. Proteomic Patterns of Cultured Breast Cancer Cells and Epithelial Mammary Cells. Ann N Y Acad Sci. 2002 Jun;963:122-139. [PubMed]
  65. Kettman JR, Coleclough C, Frey JR, Lefkovits I. Clonal proteomics: One gene - family of proteins.  Proteomics. 2002 Jun;2(6):624-31. [PubMed]
  66. Amiour N, Merlino M, Leroy P, Branlard G. Proteomic analysis of amphiphilic proteins of hexaploid wheat kernels. Proteomics. 2002 Jun;2(6):632-41. [PubMed]
  67. Oguri T, Takahata I, Katsuta K, Nomura E, Hidaka M, Inagaki N. Proteome analysis of rat hippocampal neurons by multiple large gel two-dimensional electrophoresis. Proteomics. 2002 Jun;2(6):666-72. [PubMed]
  68. Moller A, Malerczyk C, Volker U, Stoppler H, Maser E. Monitoring daunorubicin-induced alterations in protein expression in pancreas carcinoma cells by two-dimensional gel electrophoresis. Proteomics. 2002 Jun;2(6):697-705. [PubMed]
  69. Srisomsap C, Subhasitanont P, Otto A, Mueller EC, Punyarit P, Wittmann-Liebold B, Svasti J. Detection of cathepsin B up-regulation in neoplastic thyroid tissues by proteomic analysis. Proteomics. 2002 Jun;2(6):706-12. [PubMed]
  70. OStergaard O, Melchior S, Roepstorff P, Svensson B. Initial proteome analysis of mature barley seeds and malt. Proteomics. 2002 Jun;2(6):733-9. [PubMed]
  71. Bernardo K, Fleer S, Pakulat N, Krut O, Hunger F, Kronke M. Identification of Staphylococcus aureus exotoxins by combined sodium dodecyl sulfate gel electrophoresis and matrix-assisted laser desorption/ ionization-time of flight mass spectrometry. Proteomics. 2002 Jun;2(6):740-6. [PubMed]
  72. Bernardo K, Pakulat N, Macht M, Krut O, Seifert H, Fleer S, Hunger F, Kronke M. Identification and discrimination of Staphylococcus aureus strains using matrix-assisted laser desorption/ionization-time of flight mass spectrometry. Proteomics. 2002 Jun;2(6):747-53. [PubMed]
  73. Ueberle B, Frank R, Herrmann R. The proteome of the bacterium Mycoplasma pneumoniae: Comparing predicted open reading frames to identified gene products. Proteomics. 2002 Jun;2(6):754-64. [PubMed]
  74. Kornilovs'ka I, Nilsson I, Utt M, Ljungh A, Wadstrom T. Immunogenic proteins of Helicobacter pullorum, Helicobacter bilis and Helicobacter hepaticus identified by two-dimensional gel electrophoresis and immunoblotting. Proteomics. 2002 Jun;2(6):775-83. [PubMed]
  75. Gohar M, OKstad OA, Gilois N, Sanchis V, Kolst Solidus In Circle AB, Lereclus D. Two-dimensional electrophoresis analysis of the extracellular proteome of Bacillus cereus reveals the importance of the PlcR regulon. Proteomics. 2002 Jun;2(6):784-91. [PubMed]
  76. Deiwick J, Rappl C, Stender S, Jungblut PR, Hensel M. Proteomic approaches to Salmonella Pathogenicity Island 2 encoded proteins and the SsrAB regulon. Proteomics. 2002 Jun;2(6):792-9. [PubMed]
  77. Jenkins LW, Peters GW, Dixon CE, Zhang X, Clark RS, Skinner JC, Marion DW, Adelson PD, Kochanek PM. Conventional and functional proteomics using large format two-dimensional gel electrophoresis 24 hours after controlled cortical impact in postnatal day 17 rats. J Neurotrauma. 2002 Jun;19(6):715-40. [PubMed]
  78. Woo AJ, Dods JS, Susanto E, Ulgiati D, Abraham LJ. A proteomics approach for the identification of DNA binding activities observed in the electrophoretic mobility shift assay. Mol Cell Proteomics. 2002 Jun;1(6):472-8. [PubMed]
  79. Rabilloud T, Heller M, Gasnier F, Luche S, Rey C, Aebersold R, Benahmed M, Louisot P, Lunardi J. Proteomics analysis of cellular response to oxidative stress: Evidence for in vivo over-oxidation of peroxiredoxins at their active site. J Biol Chem 2002 May 31;277(22):19396-401[PubMed]
  80. Fuchigami T, Misumi S, Takamune N, Takahashi I, Takama M, Shoji S. Acid-labile formylation of amino terminal proline of human immunodeficiency virus type 1 p24(gag) was found by proteomics using two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry. Biochem Biophys Res Commun. 2002 May 10;293(3):1107-13. [PubMed]
  81. Sinchaikul S, Sookkheo B, Topanuruk S, Juan HF, Phutrakul S, Chen ST. Bioinformatics, functional genomics, and proteomics study of Bacillus sp. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 May 5;771(1-2):261-87. [PubMed]
  82. Champomier-Verges MC, Maguin E, Mistou MY, Anglade P, Chich JF. Lactic acid bacteria and proteomics: current knowledge and perspectives.  J Chromatogr B Analyt Technol Biomed Life Sci. 2002 May 5;771(1-2):329-42. [PubMed]
  83. Ticha M, Pacakova V V, Stulik K. Proteomics of allergens. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 May 5;771(1-2):343-353. [PubMed]
  84. Gianazza E, Eberini I, Villa P, Fratelli M, Pinna C, Wait R, Gemeiner M, Miller I. Monitoring the effects of drug treatment in rat models of disease by serum protein analysis. J Chromatogr B Analyt Technol Biomed Life Sci. 2002 May 5;771(1-2):107-30. [PubMed]
  85. Beranova-Giorgianni S, Giorgianni F, Desiderio DM. Analysis of the proteome in the human pituitary. Proteomics 2002 May;2(5):534-42 [PubMed]
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Structural genomics

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