My microarray journal watch - year 2002 Jul-Dec  [ this week | 2004 Oct-Dec | 2004 Jul-Sep | 2004 Apr-Jun | 2004 Jan-Mar | 2003 Oct-Dec | 2003 Jul-Sep | 2003 Apr-Jun | 2003 Jan-Mar | 2002 Jul-Dec | 2002 Jan-Jun | 2001 Jul-Dec | 2001 Jan-Jun | 2000 | 1999 | 1998 | 1997 | 1996 & before ]

General
Nature Genetics Supplement: Chipping Forecast II
Human disease studies
   Disease screening, profiling and classification
   Diagnosis and clinical application
   Animal model studies
   In vitro studies
Basic science studies
   Human
   Animal
   Plant
   Microbiology
Genome scale studies
   Network/pathway reconstruction and analysis
Genetic analysis
   ArrayCGH
Pharmacogenomics and pharmacogenetics
Toxicogenomics
Technical development
Other related technical issue; microdissection; linear amplification of RNA (aRNA)
Experimental design, sample size & power
Data analysis
   Oligo design for array manufacturing
   Image analysis
   Normalization
   Pattern recognition, classification & data mining by unsupervised methods
   Pattern recognition, classification & data mining by supervised methods
   Network/pathway reconstruction and analysis
   Statistical significance of analysis
   Software
Database
Tissue microarray
Protein array
Biochip/lab-on-a-chip/micro-Total Analysis System (uTAS)
Cell microarrays
Other array platforms		 Can't find the microarray article published in 2002 in my site? 
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General

  1. Murphy D. Gene expression studies using microarrays: principles, problems, and prospects. Adv Physiol Educ. 2002 Dec;26(4):256-70. [PubMed]
  2. Nguyen DV, Arpat AB, Wang N, Carroll RJ. DNA microarray experiments: biological and technological aspects. Biometrics. 2002 Dec;58(4):701-17. [PubMed][pdf][web supplement]
  3. Jordan B. Historical Background and Anticipated Developments. Ann N Y Acad Sci. 2002 Dec;975:24-32. [PubMed]
  4. Dixon B. Microarray technology: an array of applications that is far from micro. Biotechnol Adv. 2002 Dec;20(5-6):361-2. [PubMed]
  5. Abbott A. Gene centre chips in with better route to microarrays. Nature. 2002 Nov 7;420(6911):3. [PubMed]
  6. Scheel J, Von Brevern MC, Horlein A, Fischer A, Schneider A, Bach A. Yellow pages to the transcriptome. Pharmacogenomics. 2002 Nov;3(6):791-807. [PubMed]
  7. Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ Jr, Stewart JE, Taylor R, Brazma A, Quackenbush J. An open letter to the scientific journals. Bioinformatics. 2002 Nov;18(11):1409. [PubMed]
  8. Coming to terms with microarrays. Nat Genet. 2002 Nov;32(3):333-334. [PubMed]
  9. Wang E, Lacelle C, Xu S, Zhao X, Hou M. Designer microarrays: from soup to nuts. J Gerontol A Biol Sci Med Sci. 2002 Nov;57(11):B400-5. [PubMed]
  10. Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ Jr, Stewart JE, Taylor R, Brazma A, Quackenbush J. Standards for microarray data. Science. 2002 Oct 18;298(5593):539. [PubMed]
  11. Soriano B, Bean P, Gaydos J, Tabakoff B. Streamlining microarray technology in a prototype core laboratory. Am Clin Lab. 2002 Oct;21(8):22-5. [PubMed]
  12. A guide to microarray experiments - an open letter to the scientific journals. Lancet 2002 Sep 28; 360:1019 [PubMed]
  13. Microarray standards at last. Nature. 2002 Sep 26;419(6905):323. [PubMed]
  14. Tefferi A, Bolander ME, Ansell SM, Wieben ED, Spelsberg TC.  Primer on medical genomics. Part III: Microarray experiments and data analysis. Mayo Clin Proc. 2002 Sep;77(9):927-40. [PubMed]
  15. Wessagowit V, South AP. Dermatological applications of DNA array technology. Clin Exp Dermatol. 2002 Sep;27(6):485-92. [PubMed]
  16. Nees M, Woodworth CD. Microarrays: spotlight on gene function and pharmacogenomics. Curr Cancer Drug Targets. 2001 Aug;1(2):155-75. [PubMed]
Nature Genetics Supplement: Chipping Forecast II. 2002 Dec; 32
  1. Taking stock. Nat Genet. 2002 Dec;32 Suppl 2(Supp):461. [PubMed][pdf]
  2. Trent JM, Baxevanis AD. Chipping away at genomic medicine. Nat Genet. 2002 Dec;32 Suppl 2:462. [PubMed][pdf]
  3. Van Ingen C. Biology's century: just the beginning for microarrays. Nat Genet. 2002 Dec;32 Suppl 2:463. [PubMed][pdf]
  4. Duyk GM. Sharper tools and simpler methods. Nat Genet. 2002 Dec;32 Suppl 2:465-8. [PubMed][pdf]
  5. Stoeckert CJ, Causton HC, Ball CA. Microarray databases: standards and ontologies. Nat Genet. 2002 Dec;32 Suppl 2:469-73. [PubMed][pdf]
  6. Petricoin EF, Hackett JL, Lesko LJ, Puri RK, Gutman SI, Chumakov K, Woodcock J, Feigal DW, Zoon KC, Sistare FD. Medical applications of microarray technologies: a regulatory science perspective. Nat Genet. 2002 Dec;32 Suppl 2:474-9. [PubMed][pdf]
  7. Holloway AJ, Van Laar RK, Tothill RW, Bowtell DD. Options available-from start to finish-for obtaining data from DNA microarrays II. Nat Genet. 2002 Dec;32 Suppl 2:481-9. [PubMed][pdf][web supplement]
  8. Churchill GA. Fundamentals of experimental design for cDNA microarrays. Nat Genet. 2002 Dec;32 Suppl 2:490-5. [PubMed][pdf]
  9. Quackenbush J. Microarray data normalization and transformation. Nat Genet. 2002 Dec;32 Suppl 2:496-501. [PubMed][pdf]
  10. Slonim DK. From patterns to pathways: gene expression data analysis comes of age. Nat Genet. 2002 Dec;32 Suppl 2:502-8. [PubMed][pdf][web supplement]
  11. Chuaqui RF, Bonner RF, Best CJ, Gillespie JW, Flaig MJ, Hewitt SM, Phillips JL, Krizman DB, Tangrea MA, Ahram M, Linehan WM, Knezevic V, Emmert-Buck MR. Post-analysis follow-up and validation of microarray experiments. Nat Genet. 2002 Dec;32 Suppl 2:509-14. [PubMed][pdf]
  12. Pollack JR, Iyer VR. Characterizing the physical genome. Nat Genet. 2002 Dec;32 Suppl 2:515-21. [PubMed][pdf]
  13. Cheung VG, Spielman RS. The genetics of variation in gene expression. Nat Genet. 2002 Dec;32 Suppl 2(Supp):522-525. [PubMed][pdf]
  14. MacBeath G. Protein microarrays and proteomics. Nat Genet. 2002 Dec;32 Suppl 2:526-32. [PubMed][pdf]
  15. Chung CH, Bernard PS, Perou CM. Molecular portraits and the family tree of cancer. Nat Genet. 2002 Dec;32 Suppl 2:533-40. [PubMed][pdf][web supplement]
  16. Reinke V. Functional exploration of the C. elegans genome using DNA microarrays. Nat Genet. 2002 Dec;32 Suppl 2:541-6. [PubMed][pdf]
  17. Gerhold DL, Jensen RV, Gullans SR. Better therapeutics through microarrays. Nat Genet. 2002 Dec;32 Suppl 2:547-51. [PubMed][pdf]

Human disease studies

  1. Pollock JD. Gene expression profiling: methodological challenges, results, and prospects for addiction research. Chem Phys Lipids. 2002 Dec;121(1-2):241-56. [PubMed]
  2. Moses AV, Jarvis MA, Raggo C, Bell YC, Ruhl R, Luukkonen BG, Griffith DJ, Wait CL, Druker BJ, Heinrich MC, Nelson JA, Fruh K. A Functional Genomics Approach to Kaposi's Sarcoma. Ann N Y Acad Sci. 2002 Dec;975:180-191. [PubMed]
  3. Wang N. Cytogenetics and molecular genetics of ovarian cancer.  Am J Med Genet. 2002 Oct 30;115(3):157-163. [PubMed]
  4. Cook SA, Rosenzweig A. DNA microarrays: implications for cardiovascular medicine. Circ Res. 2002 Oct 4;91(7):559-64. [PubMed]
  5. Lyons P. Gene-expression profiling and the genetic dissection of complex disease. Curr Opin Immunol. 2002 Oct;14(5):627. [PubMed]
  6. Marciano PG, Eberwine JH, Ragupathi R, Saatman KE, Meaney DF, McIntosh TK. Expression profiling following traumatic brain injury: a review. Neurochem Res. 2002 Oct;27(10):1147-55. [PubMed]
  7. Ye SQ, Usher DC, Zhang LQ. Gene expression profiling of human diseases by serial analysis of gene expression. J Biomed Sci. 2002 Sep-Oct;9(5):384-94. [PubMed]
  8. Brooks JD. Microarray analysis in prostate cancer research. Curr Opin Urol. 2002 Sep;12(5):395-9. [PubMed]
  9. Sepulveda AR, Coelho LG. Helicobacter pylori and gastric malignancies. Helicobacter. 2002 Sep;7 Suppl 1:37-42. [PubMed]
  10. Whipple ME, Kuo WP. DNA microarrays in otolaryngology-head and neck surgery. Otolaryngol Head Neck Surg. 2002 Sep;127(3):196-204. [PubMed]
  11. Wessagowit V, South AP. Dermatological applications of DNA array technology. Clin Exp Dermatol. 2002 Sep;27(6):485-92. [PubMed]
  12. Hunter SB, Moreno CS. Expression microarray analysis of brain tumors: what have we learned so far. Front Biosci. 2002 Aug 1;7:C74-82. [PubMed]
  13. Macgregor PF, Squire JA. Application of Microarrays to the Analysis of Gene Expression in Cancer. Clin Chem. 2002 Aug; 48:1170-7. [PubMed]
  14. Maier S, Olek A. Diabetes: a candidate disease for efficient DNA methylation profiling. J Nutr. 2002 Aug;132(8):2440S-3S. [PubMed]
  15. Lorenz M. Genomic approaches to fungal pathogenicity. Curr Opin Microbiol. 2002 Aug;5(4):372. [PubMed]
  16. Gray SD, Thibeault SL. Diversity in voice characteristics--interaction between genes and environment, use of microarray analysis. J Commun Disord. 2002 Jul-Aug;35(4):347-54. [PubMed]
  17. Mohr S, Leikauf GD, Keith G, Rihn BH. Microarrays as cancer keys: an array of possibilities. J Clin Oncol. 2002 Jul 15;20(14):3165-75. [PubMed]
  18. Wilson AS, Hobbs BG, Speed TP, Rakoczy PE. The microarray: potential applications for ophthalmic research. Mol Vis. 2002 Jul; 8:259-270. [PubMed][pdf]
  19. Schofield D, Triche TJ. cDNA microarray analysis of global gene expression in sarcomas. Curr Opin Oncol. 2002 Jul;14(4):406-11. [PubMed]

Disease screening, profiling and classification

  1. Chung EJ, Sung YK, Farooq M, Kim Y, Im S, Tak WY, Hwang YJ, Kim YI, Han HS, Kim JC, Kim MK. Gene expression profile analysis in human hepatocellular carcinoma by cDNA microarray. Mol Cells. 2002 Dec 31;14(3):382-7. [PubMed]
  2. Benson M, Carlsson B, Carlsson LM, Wennergren G, Cardell LO. Increased expression of vascular endothelial growth factor-a in seasonal allergic rhinitis. Cytokine. 2002 Dec 21;20(6):268-73. [PubMed]
  3. Campanaro S, Romualdi C, Fanin M, Celegato B, Pacchioni B, Trevisan S, Laveder P, De Pitta C, Pegoraro E, Hayashi YK, Valle G, Angelini C, Lanfranchi G. Gene expression profiling in dysferlinopathies using a dedicated muscle microarray. Hum Mol Genet. 2002 Dec 15;11(26):3283-98. [PubMed]
  4. Podgrabinska S, Braun P, Velasco P, Kloos B, Pepper MS, Jackson DG, Skobe M. Molecular characterization of lymphatic endothelial cells. Proc Natl Acad Sci U S A 2002 Dec 10;99(25):16069-16074 [PubMed][pdf]
  5. Dyrskjot L, Thykjaer T, Kruhoffer M, Jensen JL, Marcussen N, Hamilton-Dutoit S, Wolf H, ORntoft TF. Identifying distinct classes of bladder carcinoma using microarrays. Nat Genet. 2002 Dec 9 [epub ahead of print] [PubMed]
  6. Hasegawa S, Furukawa Y, Li M, Satoh S, Kato T, Watanabe T, Katagiri T, Tsunoda T, Yamaoka Y, Nakamura Y. Genome-wide analysis of gene expression in intestinal-type gastric cancers using a complementary DNA microarray representing 23,040 genes. Cancer Res. 2002 Dec 1;62(23):7012-7. [PubMed]
  7. Martinet W, Schrijvers DM, De Meyer GR, Thielemans J, Knaapen MW, Herman AG, Kockx MM. Gene expression profiling of apoptosis-related genes in human atherosclerosis: upregulation of death-associated protein kinase. Arterioscler Thromb Vasc Biol. 2002 Dec 1;22(12):2023-9. [PubMed] 
  8. Adeyinka A, Emberley E, Niu Y, Snell L, Murphy LC, Sowter H, Wykoff CC, Harris AL, Watson PH. Analysis of Gene Expression in Ductal Carcinoma in Situ of the Breast. Clin Cancer Res. 2002 Dec;8(12):3788-3795. [PubMed]
  9. Schachter PP, Ayesh S, Schneider T, Laster M, Czerniak A, Hochberg A. Expression of kinase genes in primary hyperparathyroidism: Adenoma versus hyperplastic parathyroid tissue. Surgery. 2002 Dec;132(6):1094-9. [PubMed]
  10. Crawley JJ, Furge KA. Identification of frequent cytogenetic aberrations in hepatocellular carcinoma using gene-expression microarray data. Genome Biol. 2002 Dec; 12: [PubMed][pdf]
  11. Desai KV, Kavanaugh CJ, Calvo A, Green JE. Chipping away at breast cancer: insights from microarray studies of human and mouse mammary cancer. Endocr Relat Cancer. 2002 Dec;9(4):207-20. [PubMed]
  12. Hofmann WK, De Vos S, Komor M, Hoelzer D, Wachsman W, Koeffler HP. Characterization of gene expression of CD34+ cells from normal and myelodysplastic bone marrow. Blood. 2002 Nov 15;100(10):3553-3560. [PubMed]
  13. Takahashi M, Yang XJ, Lavery TT, Furge KA, Williams BO, Tretiakova M, Montag A, Vogelzang NJ, Re GG, Garvin AJ, Soderhall S, Kagawa S, Hazel-Martin D, Nordenskjold A, Teh BT. Gene expression profiling of favorable histology Wilms tumors and its correlation with clinical features. Cancer Res. 2002 Nov 15;62(22):6598-605. [PubMed]
  14. Santra M, Zhan F, Tian E, Barlogie B, Shaughnessy J. A subset of multiple myeloma harboring the t(4;14)(p16;q32) translocation lack FGFR3 expression but maintain an IGH/MMSET fusion transcript. Blood. 2002 Nov 14 [epub ahead of print][PubMed]
  15. Ishigaki S, Niwa J, Ando Y, Yoshihara T, Sawada K, Doyu M, Yamamoto M, Kato K, Yotsumoto Y, Sobue G. Differentially expressed genes in sporadic amyotrophic lateral sclerosis spinal cords - screening by molecular indexing and subsequent cDNA microarray analysis. FEBS Lett. 2002 Nov 6;531(2):354-8. [PubMed]
  16. Vawter M, Crook J, Hyde T, Kleinman J, Weinberger D, Becker K, Freed W. Microarray analysis of gene expression in the prefrontal cortex in schizophrenia: a preliminary study. Schizophr Res. 2002 Nov 1;58(1):11. [PubMed]
  17. Colangelo V, Schurr J, Ball MJ, Pelaez RP, Bazan NG, Lukiw WJ. Gene expression profiling of 12633 genes in Alzheimer hippocampal CA1: Transcription and neurotrophic factor down-regulation and up-regulation of apoptotic and pro-inflammatory signaling. J Neurosci Res. 2002 Nov 1;70(3):462-473. [PubMed]
  18. Yang JJ, Preston GA, Alcorta DA, Waga I, Munger WE, Hogan SL, Sekura SB, Phillips BD, Thomas RP, Jennette JC, Falk RJ. Expression profile of leukocyte genes activated by anti-neutrophil cytoplasmic autoantibodies (ANCA). Kidney Int. 2002 Nov;62(5):1638-49. [PubMed]
  19. van de Rijn M, Rubin BP. Gene expression studies on soft tissue tumors. Am J Pathol. 2002 Nov;161(5):1531-4. [PubMed]
  20. Allander SV, Illei PB, Chen Y, Antonescu CR, Bittner M, Ladanyi M, Meltzer PS. Expression Profiling of Synovial Sarcoma by cDNA Microarrays : Association of ERBB2, IGFBP2, and ELF3 with Epithelial Differentiation. Am J Pathol. 2002 Nov;161(5):1587-95. [PubMed]
  21. Yang X, Pratley RE, Tokraks S, Bogardus C, Permana PA. Microarray profiling of skeletal muscle tissues from equally obese, non-diabetic insulin-sensitive and insulin-resistant Pima Indians. Diabetologia. 2002 Nov;45(11):1584-93. [PubMed]
  22. Dieckgraefe BK, Crimmins DL, Landt V, Houchen C, Anant S, Porche-Sorbet R, Ladenson JH. Expression of the regenerating gene family in inflammatory bowel disease mucosa: Reg Ialpha upregulation, processing, and antiapoptotic activity. J Investig Med. 2002 Nov;50(6):421-34. [PubMed]
  23. Kim S, Dougherty ER, Shmulevich L, Hess KR, Hamilton SR, Trent JM, Fuller GN, Zhang W. Identification of combination gene sets for glioma classification. Mol Cancer Ther. 2002 Nov;1(13):1229-36. [PubMed]
  24. Heighway J, Knapp T, Boyce L, Brennand S, Field JK, Betticher DC, Ratschiller D, Gugger M, Donovan M, Lasek A, Rickert P. Expression profiling of primary non-small cell lung cancer for target identification. Oncogene. 2002 Oct 31;21(50):7749-63. [PubMed]
  25. Lee S, Baek M, Yang H, Bang YJ, Kim WH, Ha JH, Kim DK, Jeoung DI. Identification of genes differentially expressed between gastric cancers and normal gastric mucosa with cDNA microarrays. Cancer Lett. 2002 Oct 28;184(2):197-206. [PubMed]
  26. Greenberg SA, Sanoudou D, Haslett JN, Kohane IS, Kunkel LM, Beggs AH, Amato AA. Molecular profiles of inflammatory myopathies. Neurology. 2002 Oct 22;59(8):1170-1182. [PubMed]
  27. Fathallah-Shaykh HM, Rigen M, Zhao LJ, Bansal K, He B, Engelhard HH, Cerullo L, Roenn KV, Byrne R, Munoz L, Rosseau GL, Glick R, Lichtor T, DiSavino E. Mathematical modeling of noise and discovery of genetic expression classes in gliomas. Oncogene. 2002 Oct 17;21(47):7164-74. [PubMed]
  28. Nagayama S, Katagiri T, Tsunoda T, Hosaka T, Nakashima Y, Araki N, Kusuzaki K, Nakayama T, Tsuboyama T, Nakamura T, Imamura M, Nakamura Y, Toguchida J. Genome-wide Analysis of Gene Expression in Synovial Sarcomas Using a cDNA Microarray. Cancer Res. 2002 Oct 15;62(20):5859-66. [PubMed]
  29. Mendez E, Cheng C, Farwell DG, Ricks S, Agoff SN, Futran ND, Weymuller EA Jr, Maronian NC, Zhao LP, Chen C. Transcriptional expression profiles of oral squamous cell carcinomas. Cancer. 2002 Oct 1;95(7):1482-94. [PubMed]
  30. Ginestier C, Charafe-Jauffret E, Bertucci F, Eisinger F, Geneix J, Bechlian D, Conte N, Adelaide J, Toiron Y, Nguyen C, Viens P, Mozziconacci MJ, Houlgatte R, Birnbaum D, Jacquemier J. Distinct and complementary information provided by use of tissue and DNA microarrays in the study of breast tumor markers. Am J Pathol. 2002 Oct;161(4):1223-33. [PubMed]
  31. Ying-Hao S, Qing Y, Lin-Hui W, Li G, Rong T, Kang Y, Chuan-Liang X, Song-Xi Q, Yao L, Yi X, Yu-Ming M. Monitoring gene expression profile changes in bladder transitional cell carcinoma using cDNA microarray. Urol Oncol. 2002 Sep-Oct;7(5):207-12. [PubMed]
  32. Baranzini SE, Hauser SL. Large-scale gene-expression studies and the challenge of multiple sclerosis. Genome Biol 2002 Sep 16;3(10):reviews1027 [PubMed]
  33. Bakay M, Zhao P, Chen J, Hoffman E. A web-accessible complete transcriptome of normal human and DMD muscle. Neuromuscul Disord. 2002 Oct;12 Suppl:S125. [PubMed]
  34. Liapis H, Doshi RH, Watson MA, Liapis A, Steinhardt GF. Reduced renin expression and altered gene transcript profiles in multicystic dysplastic kidneys. J Urol. 2002 Oct;168(4 Pt 2):1816-20; discussion 1820. [PubMed]
  35. Wilson KS, Roberts H, Leek R, Harris AL, Geradts J. Differential Gene Expression Patterns in HER2/neu-Positive and -Negative Breast Cancer Cell Lines and Tissues. Am J Pathol. 2002 Oct;161(4):1171-85. [PubMed]
  36. Frierson HF Jr, El-Naggar AK, Welsh JB, Sapinoso LM, Su AI, Cheng J, Saku T, Moskaluk CA, Hampton GM. Large scale molecular analysis identifies genes with altered expression in salivary adenoid cystic carcinoma. Am J Pathol. 2002 Oct;161(4):1315-23. [PubMed]
  37. Gu J, Rihl M, Marker-Hermann E, Baeten D, Kuipers JG, Song YW, Maksymowych WP, Burgos-Vargas R, Veys EM, Keyser FD, Deister H, Xiong M, Huang F, Tsai WC, Yu DT. Clues to pathogenesis of spondyloarthropathy derived from synovial fluid mononuclear cell gene expression profiles. J Rheumatol. 2002 Oct;29(10):2159-64. [PubMed]
  38. Pongrac J, Middleton FA, Lewis DA, Levitt P, Mirnics K. Gene expression profiling with DNA microarrays: advancing our understanding of psychiatric disorders. Neurochem Res. 2002 Oct;27(10):1049-63. [PubMed]
  39. Claudio JO, Masih-Khan E, Tang H, Goncalves J, Voralia M, Li ZH, Nadeem V, Cukerman E, Francisco-Pabalan O, Liew CC, Woodgett JR, Stewart AK. A molecular compendium of genes expressed in multiple myeloma. Blood. 2002 Sep 15;100(6):2175-2186. [PubMed]
  40. Lin L, Miller CT, Contreras JI, Prescott MS, Dagenais SL, Wu R, Yee J, Orringer MB, Misek DE, Hanash SM, Glover TW, Beer DG. The hepatocyte nuclear factor 3 alpha gene, HNF3alpha (FOXA1), on chromosome band 14q13 is amplified and overexpressed in esophageal and lung adenocarcinomas. Cancer Res. 2002 Sep 15;62(18):5273-9. [PubMed]
  41. Matei D, Graeber TG, Baldwin RL, Karlan BY, Rao J, Chang DD. Gene expression in epithelial ovarian carcinoma. Oncogene. 2002 Sep 12;21(41):6289-98. [PubMed]
  42. Miller SK, Good R, Drew DR, Delorenzi M, Sanders PR, Hodder AN, Speed TP, Cowman AF, De Koning-Ward TF, Crabb BS. A subset of plasmodium falciparum SERA genes are expressed and appear to play an important role in the erythrocytic cycle. J Biol Chem. 2002 Sep 11 [epub ahead of print][PubMed]
  43. Signoretti S, Di Marcotullio L, Richardson A, Ramaswamy S, Isaac B, Rue M, Monti F, Loda M, Pagano M. Oncogenic role of the ubiquitin ligase subunit Skp2 in human breast cancer.  J Clin Invest. 2002 Sep 1;110(5):633-641. [PubMed]
  44. Ueki A, Isozaki Y, Tomokuni A, Hatayama T, Ueki H, Kusaka M, Shiwa M, Arikuni H, Takeshita T, Morimoto K. Intramolecular epitope spreading among anti-caspase-8 autoantibodies in patients with silicosis, systemic sclerosis and systemic lupus erythematosus, as well as in healthy individuals. Clin Exp Immunol. 2002 Sep;129(3):556-61. [PubMed]
  45. Squire JA, Bayani J, Luk C, Unwin L, Tokunaga J, MacMillan C, Irish J,  Brown D, Gullane P, Kamel-Reid S. Molecular cytogenetic analysis of head and neck squamous cell carcinoma: By comparative genomic hybridization, spectral karyotyping, and expression array analysis. Head Neck. 2002 Sep;24(9):874-887. [PubMed]
  46. Welling DB, Lasak JM, Akhmametyeva E, Ghaheri B, Chang LS. cDNA microarray analysis of vestibular schwannomas. Otol Neurotol. 2002 Sep;23(5):736-48. [PubMed]
  47. Benz S, Lobler M, Obermaier R, Kortmann B, Pfeffer F, Koczan D, Thiesen H, Hopt U. New possible taget genes in pancreatic ischemia/reperfusion-injury identified by microarray analysis.Transplant Proc. 2002 Sep;34(6):2369. [PubMed]
  48. Lasak JM, Welling DB, Akhmametyeva EM, Salloum M, Chang LS. Retinoblastoma-cyclin-dependent kinase pathway deregulation in vestibular schwannomas. Laryngoscope. 2002 Sep;112(9):1555-61. [PubMed]
  49. Diehl S, Diehl F, El-Sayed N, Clayton C, Hoheisel J. Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray. Mol Biochem Parasitol. 2002 Aug 28;123(2):115. [PubMed]
  50. Ichikawa Y, Ishikawa T, Takahashi S, Hamaguchi Y, Morita T, Nishizuka I, Yamaguchi S, Endo I, Ike H, Togo S, Oki S, Shimada H, Kadota K, Nakamura S, Goto H, Nitanda H, Satomi S, Sakai T, Narita I, Gejyo F, Tomaru Y, Shimizu K, Hayashizaki Y, Okazaki Y. Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method. Biochem Biophys Res Commun. 2002 Aug 16;296(2):497. [PubMed]
  51. Tarte K, De Vos J, Thykjaer T, Zhan F, Fiol G, Costes V, Reme T, Legouffe E, Rossi JF, Shaughnessy J Jr, ORntoft TF, Klein B. Generation of polyclonal plasmablasts from peripheral blood B cells: a normal counterpart of malignant plasmablasts. Blood. 2002 Aug 15;100(4):1113-1122. [PubMed]
  52. Cheung ST, Chen X, Guan XY, Wong SY, Tai LS, Ng IO, So S, Fan ST. Identify Metastasis-associated Genes in Hepatocellular Carcinoma through Clonality Delineation for Multinodular Tumor. Cancer Res. 2002 Aug 15;62(16):4711-4721. [PubMed]
  53. Wang R, Beggs M, Robertson L, Cerniglia C. Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol Lett. 2002 Aug 6;213(2):175. [PubMed]
  54. Tanwar MK, Gilbert MR, Holland EC. Gene expression microarray analysis reveals YKL-40 to be a potential serum marker for malignant character in human glioma. Cancer Res. 2002 Aug 1;62(15):4364-8. [PubMed]
  55. Beer DG, Kardia SL, Huang CC, Giordano TJ, Levin AM, Misek DE, Lin L, Chen G, Gharib TG, Thomas DG, Lizyness ML, Kuick R, Hayasaka S, Taylor JM, Iannettoni MD, Orringer MB, Hanash S. Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat Med. 2002 Aug;8(8):816-24. [PubMed][web supplement]
  56. Makishima H, Ishida F, Ito T, Kitano K, Ueno S, Ohmine K, Yamashita Y, Ota J, Ota M, Yamauchi K, Mano H. DNA microarray analysis of T cell-type lymphoproliferative disease of granular lymphocytes. Br J Haematol. 2002 Aug;118(2):462-469. [PubMed]
  57. Zhang H, Lu H, Enosawa S, Takahara S, Sakamoto K, Nakajima T, Saito H, Suzuki S. Microarray analysis of gene expression in peripheral blood mononuclear cells derived from long-surviving renal recipients. Transplant Proc. 2002 Aug;34(5):1757. [PubMed]
  58. Watson MA, Gutmann DH, Peterson K, Chicoine MR, Kleinschmidt-DeMasters BK, Brown HG, Perry A. Molecular characterization of human meningiomas by gene expression profiling using high-density oligonucleotide microarrays. Am J Pathol. 2002 Aug;161(2):665-72. [PubMed]
  59. Nishiu M, Yanagawa R, Nakatsuka S, Yao M, Tsunoda T, Nakamura Y, Aozasa K. Microarray Analysis of Gene-expression Profiles in Diffuse Large B-cell Lymphoma: Identification of Genes Related to Disease Progression. Jpn J Cancer Res. 2002 Aug;93(8):894-901. [PubMed]
  60. Carroll JM, McElwee KJ, E King L, Byrne MC, Sundberg JP. Gene array profiling and immunomodulation studies define a cell-mediated immune response underlying the pathogenesis of alopecia areata in a mouse model and humans. J Invest Dermatol. 2002 Aug;119(2):392-402. [PubMed]
  61. Kitahara O, Katagiri T, Tsunoda T, Harima Y, Nakamura Y. Classification of sensitivity or resistance of cervical cancers to ionizing radiation according to expression profiles of 62 genes selected by cDNA microarray analysis. Neoplasia. 2002 Jul-Aug;4(4):295-303. [PubMed]
  62. Schoch C, Kohlmann A, Schnittger S, Brors B, Dugas M, Mergenthaler S, Kern W, Hiddemann W, Eils R, Haferlach T. Acute myeloid leukemias with reciprocal rearrangements can be distinguished by specific gene expression profiles. Proc Natl Acad Sci U S A 2002 Jul 23;99(15):10008-10013 [PubMed][pdf][web supplement]
  63. Zou TT, Selaru FM, Xu Y, Shustova V, Yin J, Mori Y, Shibata D, Sato F, Wang S, Olaru A, Deacu E, Liu TC, Abraham JM, Meltzer SJ. Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon.  Oncogene. 2002 Jul 18;21(31):4855-62. [PubMed]
  64. Iizuka N, Oka M, Yamada-Okabe H, Mori N, Tamesa T, Okada T, Takemoto N, Tangoku A, Hamada K, Nakayama H, Miyamoto T, Uchimura S, Hamamoto Y. Comparison of Gene Expression Profiles between Hepatitis B Virus- and Hepatitis C Virus-infected Hepatocellular Carcinoma by Oligonucleotide Microarray Data on the Basis of a Supervised Learning Method. Cancer Res. 2002 Jul 15;62(14):3939-44. [PubMed]
  65. Sugita M, Geraci M, Gao B, Powell RL, Hirsch FR, Johnson G, Lapadat R, Gabrielson E, Bremnes R, Bunn PA, Franklin WA. Combined use of oligonucleotide and tissue microarrays identifies cancer/testis antigens as biomarkers in lung carcinoma. Cancer Res. 2002 Jul 15;62(14):3971-9. [PubMed]
  66. Hwang JJ, Allen PD, Tseng GC, Lam CW, Fananapazir L, Dzau VJ, Liew CC. Microarray gene expression profiles in dilated and hypertrophic cardiomyopathic end-stage heart failure.  Physiol Genomics. 2002 Jul 12;10(1):31-44. [PubMed][web supplement]
  67. Burger MJ, Tebay MA, Keith PA, Samaratunga HM, Clements J, Lavin MF, Gardiner RA. Expression analysis of delta-catenin and prostate-specific membrane antigen: Their potential as diagnostic markers for prostate cancer. Int J Cancer. 2002 Jul 10;100(2):228-37. [PubMed]
  68. Crnogorac-Jurcevic T, Efthimiou E, Nielsen T, Loader J, Terris B, Stamp G, Baron A, Scarpa A, Lemoine NR. Expression profiling of microdissected pancreatic adenocarcinomas. Oncogene. 2002 Jul 4;21(29):4587-94. [PubMed]
  69. Hedenfalk IA. Gene Expression Profiling of Hereditary and Sporadic Ovarian Cancers Reveals Unique BRCA1 and BRCA2 Signatures. J Natl Cancer Inst 2002 Jul 3; 94: 960-961. [PubMed]
  70. Jazaeri AA. et al. Gene Expression Profiles of BRCA1-Linked, BRCA2-Linked, and Sporadic Ovarian Cancers. J Natl Cancer Inst 2002 Jul 3; 94: 990-1000. [PubMed][web supplement]
  71. Kato HD, Terao Y, Ogawa M, Matsuda T, Arima T, Kato K, Yong Z, Wake N. Growth-associated Gene Expression Profiles by Microarray Analysis of Trophoblast of Molar Pregnancies and Normal Villi. Int J Gynecol Pathol. 2002 Jul;21(3):255-260. [PubMed]
  72. Reimer T, Koczan D, Gerber B, Richter D, Thiesen HJ, Friese K. Microarray analysis of differentially expressed genes in placental tissue of pre-eclampsia: up-regulation of obesity-related genes. Mol Hum Reprod. 2002 Jul;8(7):674-80. [PubMed]
  73. Gu J, Marker-Hermann E, Baeten D, Tsai WC, Gladman D, Xiong M, Deister H, Kuipers JG, Huang F, Song YW, Maksymowych W, Kalsi J, Bannai M, Seta N, Rihl M, Crofford LJ, Veys E, Keyser FD, Yu DT. A 588-gene microarray analysis of the peripheral blood mononuclear cells of spondyloarthropathy patients. Rheumatology (Oxford). 2002 Jul;41(7):759-766. [PubMed]
  74. Tsibris JC, Segars J, Coppola D, Mane S, Wilbanks GD, O'Brien WF, Spellacy WN. Insights from gene arrays on the development and growth regulation of uterine leiomyomata. Fertil Steril. 2002 Jul;78(1):114-21. [PubMed]
  75. Skubitz KM, Skubitz AP. Differential gene expression in renal-cell cancer. J Lab Clin Med. 2002 Jul;140(1):52-64. [PubMed]
  76. Li Y, Li Y, Tang R, Xu H, Qiu M, Chen Q, Chen J, Fu Z, Ying K, Xie Y, Mao Y. Discovery and analysis of hepatocellular carcinoma genes using cDNA microarrays. J Cancer Res Clin Oncol. 2002 Jul;128(7):369-79. [PubMed]
  77. Wei SH, Chen CM, Strathdee G, Harnsomburana J, Shyu CR, Rahmatpanah F, Shi H, Ng SW, Yan PS, Nephew KP, Brown R, Huang TH. Methylation Microarray Analysis of Late-Stage Ovarian Carcinomas Distinguishes Progression-free Survival in Patients and Identifies Candidate Epigenetic Markers. Clin Cancer Res. 2002 Jul;8(7):2246-52. [PubMed]

Diagnosis and clinical practice

  1. Sauter G, Simon R. Predictive molecular pathology. N Engl J Med. 2002 Dec 19;347(25):1995-6. [PubMed]
  2. Kallioniemi A. Molecular signatures of breast cancer--predicting the future. N Engl J Med. 2002 Dec 19;347(25):2067-8. [PubMed]
  3. van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C, Marton MJ, Parrish M, Atsma D, Witteveen A, Glas A, Delahaye L, van der Velde T, Bartelink H, Rodenhuis S, Rutgers ET, Friend SH, Bernards R. A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med. 2002 Dec 19;347(25):1999-2009. [PubMed]
  4. Kebriaei P, Anastasi J, Larson RA. Acute lymphoblastic leukaemia: diagnosis and classification. Best Pract Res Clin Haematol. 2002 Dec;15(4):597-621. [PubMed]
  5. Inoue H, Matsuyama A, Mimori K, Ueo H, Mori M. Prognostic score of gastric cancer determined by cDNA microarray. Clin Cancer Res. 2002 Nov;8(11):3475-9. [PubMed]
  6. Eikmans M, Baelde HJ, De Heer E, Bruijn JA. RNA expression profiling as prognostic tool in renal patients: Toward nephrogenomics. Kidney Int. 2002 Oct;62(4):1125-35. [PubMed]
  7. Jenssen TK, Kuo WP, Stokke T, Hovig E. Associations between gene expressions in breast cancer and patient survival. Hum Genet. 2002 Oct;111(4-5):411-20. [PubMed]
  8. Gordon GJ, Jensen RV, Hsiao LL, Gullans SR, Blumenstock JE, Ramaswamy S, Richards WG, Sugarbaker DJ, Bueno R. Translation of Microarray Data into Clinically Relevant Cancer Diagnostic Tests Using Gene Expression Ratios in Lung Cancer and Mesothelioma. Cancer Res. 2002 Sep 1;62(17):4963-4967. [PubMed]
  9. Cole J, Isik F. Human genomics and microarrays: implications for the plastic surgeon. Plast Reconstr Surg. 2002 Sep 1;110(3):849-58. [PubMed]
  10. Ichikawa Y, Ishikawa T, Takahashi S, Hamaguchi Y, Morita T, Nishizuka I, Yamaguchi S, Endo I, Ike H, Togo S, Oki S, Shimada H, Kadota K, Nakamura S, Goto H, Nitanda H, Satomi S, Sakai T, Narita I, Gejyo F, Tomaru Y, Shimizu K, Hayashizaki Y, Okazaki Y. Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method. Biochem Biophys Res Commun. 2002 Aug 16;296(2):497. [PubMed]
  11. Davis RE, Staudt LM. Molecular diagnosis of lymphoid malignancies by gene expression profiling.  Curr Opin Hematol. 2002 Jul;9(4):333-8. [PubMed]

Animal model studies

  1. Schmidt-Kastner R, Zhang B, Belayev L, Khoutorova L, Amin R, Busto R, Ginsberg MD. DNA microarray analysis of cortical gene expression during early recirculation after focal brain ischemia in rat. Brain Res Mol Brain Res. 2002 Dec 16;108(1-2):81-93. [PubMed]
  2. Xu Y, Clark JC, Aronow BJ, Dey CR, Liu C, Wooldridge JL, Whitsett JA. Transcriptional adaptation to CFTR deficiency. J Biol Chem. 2002 Dec 12 [epub ahead of print] [PubMed]
  3. Hoshikawa Y, Nana-Sinkam P, Moore MD, Sotto-Santiago S, Phang T, Keith RL, Morris KG, Kondo T, Tuder RM, Voelkel NF, Geraci MW. Hypoxia induces different genes in the lungs of rats when compared with mice. Physiol Genomics. 2002 Dec 3 [epub ahead of print] [PubMed]
  4. Levy SE, Muldowney JA 3rd. Microarray analysis of neointima: flowing toward a clear future. Arterioscler Thromb Vasc Biol. 2002 Dec 1;22(12):1946-7.  [PubMed]
  5. Geary RL, Wong JM, Rossini A, Schwartz SM, Adams LD. Expression profiling identifies 147 genes contributing to a unique primate neointimal smooth muscle cell phenotype. Arterioscler Thromb Vasc Biol. 2002 Dec 1;22(12):2010-6. [PubMed]
  6. Nakahashi TK, Hoshina K, Tsao PS, Sho E, Sho M, Karwowski JK, Yeh C, Yang RB, Topper JN, Dalman RL. Flow loading induces macrophage antioxidative gene expression in experimental aneurysms. Arterioscler Thromb Vasc Biol. 2002 Dec 1;22(12):2017-22. [PubMed]
  7. Alexander JJ, Saxena AK, Bao L, Jacob A, Haas M, Quigg RJ. Prominent renal expression of a murine leukemia retrovirus in experimental systemic lupus erythematosus. J Am Soc Nephrol. 2002 Dec;13(12):2869-77. [PubMed]
  8. Adner M, Rose AC, Zhang Y, Sward K, Benson M, Uddman R, Shankley NP, Cardell LO. An assay to evaluate the long-term effects of inflammatory mediators on murine airway smooth muscle: evidence that TNFalpha up-regulates 5-HT(2A)-mediated contraction. Br J Pharmacol. 2002 Dec;137(7):971-82. [PubMed]
  9. Carmody RJ, Hilliard B, Maguschak K, Chodosh LA, Chen YH. Genomic scale profiling of autoimmune inflammation in the central nervous system: the nervous response to inflammation. J Neuroimmunol. 2002 Dec;133(1-2):95-107. [PubMed]
  10. Cobb JP, Laramie JM, Stormo GD, Morrissey JJ, Shannon WD, Qiu Y, Karl IE, Buchman TG, Hotchkiss RS. Sepsis gene expression profiling: Murine splenic compared with hepatic responses determined by using complementary DNA microarrays. Crit Care Med. 2002 Dec;30(12):2711-21. [PubMed]
  11. Nelson GA, Jones TA, Chesnut A, Smith AL. Radiation-induced gene expression in the nematode Caenorhabditis elegans. J Radiat Res (Tokyo). 2002 Dec;43 Suppl:S199-203. [PubMed]
  12. Cho G, Ryu S, Kim Y, Kim Y, Cheon E, Park J, Kim H, Kang S, Choi W. Upregulation of glucose-dependent insulinotropic polypeptide and its receptor in the retina of streptozotocin-induced diabetic rats. Curr Eye Res. 2002 Dec;25(6):381-8. [PubMed]
  13. Youdim MB, Grunblatt E, Levites Y, Maor G, Mandel S. Early and late molecular events in neurodegeneration and neuroprotection in Parkinson's disease MPTP model as assessed by cDNA microarray; the role of iron. Neurotox Res. 2002 Nov-Dec;4(7-8):679-689. [PubMed]
  14. Amberger A, Schneeberger S, Hernegger G, Brandacher G, Obrist P, Lackner P, Margreiter R, Mark W. Gene expression profiling of prolonged cold ischemia and reperfusion in murine heart transplants. Transplantation. 2002 Nov 27;74(10):1441-9. [PubMed]
  15. Tudor M, Akbarian S, Chen RZ, Jaenisch R. Transcriptional profiling of a mouse model for Rett syndrome reveals subtle transcriptional changes in the brain. Proc Natl Acad Sci U S A 2002 Nov 26;99(24):15536-15541 [PubMed][web supplement]
  16. Weinberg EO, Mirotsou M, Gannon J, Dzau VJ, Lee RT, Pratt RE. GENDER AND TEMPORAL DEPENDENCE OF THE LEFT VENTRICULAR GENOMIC RESPONSE TO PRESSURE OVERLOAD. Physiol Genomics. 2002 Nov 26 [epub ahead of print] [PubMed]
  17. Sheng JG, Price DL, Koliatsos VE. Disruption of corticocortical connections ameliorates amyloid burden in terminal fields in a transgenic model of abeta amyloidosis. J Neurosci. 2002 Nov 15;22(22):9794-9. [PubMed]
  18. Dong H, Toyoda N, Yoneyama H, Kurachi M, Kasahara T, Kobayashi Y, Inadera H, Hashimoto S, Matsushima K. Gene expression profile analysis of the mouse liver during bacteria-induced fulminant hepatitis by a cDNA microarray system. Biochem Biophys Res Commun. 2002 Nov 15;298(5):675-86. [PubMed]
  19. Wang W, Wyckoff JB, Frohlich VC, Oleynikov Y, Huttelmaier S, Zavadil J, Cermak L, Bottinger EP, Singer RH, White JG, Segall JE, Condeelis JS. Single cell behavior in metastatic primary mammary tumors correlated with gene expression patterns revealed by molecular profiling. Cancer Res. 2002 Nov 1;62(21):6278-88. [PubMed]
  20. Saiura A, Sugawara Y, Harihara Y, Sata M, Hamakubo T, Kodama T, Makuuchi M. Gene expression profile during acute rejection in rat-to-mouse concordant cardiac xenograft by means of DNA microarray. Transpl Int. 2002 Nov;15(11):535-40. [PubMed]
  21. Stegall M, Park W, Kim D, Kremers W. Gene expression during acute allograft rejection: novel statistical analysis of microarray data. Am J Transplant. 2002 Nov;2(10):913-25. [PubMed]
  22. Thornton S, Sowders D, Aronow B, Witte DP, Brunner HI, Giannini EH, Hirsch R. DNA microarray analysis reveals novel gene expression profiles in collagen-induced arthritis. Clin Immunol. 2002 Nov;105(2):155-68. [PubMed]
  23. Nakajima A, Wada K, Katayama K, Saubermann L, Osawa E, Nagase H, Ueno N, Matsuhashi N, Aburatani H. Gene expression profile after peroxisome proliferator activator receptor-gamma ligand administration in dextran sodium sulfate mice. J Gastroenterol. 2002 Nov;37 Suppl 14:62-6. [PubMed]
  24. Costigan M, Befort K, Karchewski L, Griffin RS, D'Urso D, Allchorne A, Sitarski J, Mannion JW, Pratt RE, Woolf CJ. Replicate high-density rat genome oligonucleotide microarrays reveal hundreds of regulated genes in the dorsal root ganglion after peripheral nerve injury. BMC Neurosci 2002 Oct 25;3(1):16 [PubMed][pdf]
  25. Zhang X, Liu Y, Gilcrease MZ, Yuan XH, Clayman GL, Adler-Storthz K, Chen Z. A lymph node metastatic mouse model reveals alterations of metastasis-related gene expression in metastatic human oral carcinoma sublines selected from a poorly metastatic parental cell line. Cancer. 2002 Oct 15;95(8):1663-72. [PubMed]
  26. Bowler R, Sheng H, Enghild J, Pearlstein R, Warner D, Crapo J. A catalytic antioxidant (AEOL 10150) attenuates expression of inflammatory genes in stroke. Free Radic Biol Med. 2002 Oct 15;33(8):1141. [PubMed]
  27. Stegall MD, Park WD, Kim DY, Covarrubias M, Khair A, Kremers WK. Changes in intragraft gene expression secondary to ischemia reperfusion after cardiac transplantation. Transplantation. 2002 Oct 15;74(7):924-930. [PubMed]
  28. Sergeant GP, Large RJ, Beckett EA, McGeough CM, Ward SM, Horowitz B. Microarray comparison of normal and W/Wv mice in the gastric fundus indicates a supersensitive phenotype. Physiol Genomics. 2002 Oct 2;11(1):1-9. [PubMed]
  29. Wiechmann AF. Regulation of gene expression by melatonin: a microarray survey of the rat retina. J Pineal Res. 2002 Oct;33(3):178-85. [PubMed]
  30. Spies M, Dasu MR, Svrakic N, Nesic O, Barrow RE, Perez-Polo JR, Herndon DN. Gene expression analysis in burn wounds of rats. Am J Physiol Regul Integr Comp Physiol. 2002 Oct;283(4):R918-30. [PubMed]
  31. Shan L, He M, Yu M, Qiu C, Lee NH, Liu ET, Snyderwine EG. cDNA microarray profiling of rat mammary gland carcinomas induced by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine and 7,12-dimethylbenz[a]anthracene. Carcinogenesis. 2002 Oct;23(10):1561-1568. [PubMed]
  32. Saito M, Smiley J, Toth R, Vadas C. Microarray analysis of gene expression in rat hippocampus after chronic ethanol treatment. Neurochem Res. 2002 Oct;27(10):1221-9. [PubMed]
  33. Mandel S, Grunblatt E, Maor G, Youdim MB. Early and late gene changes in MPTP mice model of Parkinson's disease employing cDNA microarray. Neurochem Res. 2002 Oct;27(10):1231-43. [PubMed]
  34. Calvo A, Xiao N, Kang J, Best CJ, Leiva I, Emmert-Buck MR, Jorcyk C, Green JE. Alterations in Gene Expression Profiles during Prostate Cancer Progression: Functional Correlations to Tumorigenicity and Down-Regulation of Selenoprotein-P in Mouse and Human Tumors. Cancer Res. 2002 Sep 15;62(18):5325-35. [PubMed]
  35. Hu Y, Ippolito JE, Garabedian EM, Humphrey PA, Gordon JI. Molecular characterization of a metastatic neuroendocrine cell cancer arising in the prostates of transgenic mice. J Biol Chem. 2002 Sep 11 [epub ahead of print] [PubMed]
  36. Tadic SD, Elm MS, Li HS, Van Londen GJ, Subbotin VM, Whitcomb DC, Eagon PK. Sex differences in hepatic gene expression in a rat model of ethanol-induced liver injury. J Appl Physiol. 2002 Sep;93(3):1057-68. [PubMed]
  37. Cao Z, Wu HK, Bruce A, Wollenberg K, Panjwani N. Detection of differentially expressed genes in healing mouse corneas, using cDNA microarrays. Invest Ophthalmol Vis Sci. 2002 Sep;43(9):2897-904. [PubMed]
  38. Lemon WJ, Bernert H, Sun H, Wang Y, You M. Identification of candidate lung cancer susceptibility genes in mouse using oligonucleotide arrays. J Med Genet. 2002 Sep; 39:644-655. [PubMed]
  39. Lumkul R, Gorin NC, Malehorn MT, Hoehn GT, Zheng R, Baldwin B, Small D, Gore S, Smith D, Meltzer PS, Civin CI. Human AML cells in NOD/SCID mice: engraftment potential and gene expression. Leukemia. 2002 Sep;16(9):1818-26. [PubMed]
  40. Rouger K, Le Cunff M, Steenman M, Potier MC, Gibelin N, Dechesne CA, Leger JJ. Global/temporal gene expression in diaphragm and hindlimb muscles of dystrophin-deficient (mdx) mice. Am J Physiol Cell Physiol. 2002 Sep;283(3):C773-84. [PubMed]
  41. Magee TR, Ferrini M, Garban HJ, Vernet D, Mitani K, Rajfer J, Gonzalez-Cadavid NF. Gene therapy of erectile dysfunction in the rat with penile neuronal nitric oxide synthase. Biol Reprod. 2002 Sep;67(3):1033-41. [PubMed]
  42. Lenzner S, Prietz S, Feil S, Nuber UA, Ropers HH, Berger W. Global gene expression analysis in a mouse model for Norrie disease: late involvement of photoreceptor cells. Invest Ophthalmol Vis Sci. 2002 Sep;43(9):2825-33. [PubMed]
  43. Orr HT. Microarrays and polyglutamine disorders: reports from the Hereditary Disease Array Group. Hum Mol Genet. 2002 Aug 15;11(17):1909-10. [PubMed]
  44. Luthi-Carter R, Hanson SA, Strand AD, Bergstrom DA, Chun W, Peters NL, Woods AM, Chan EY, Kooperberg C, Krainc D, Young AB, Tapscott SJ, Olson JM. Dysregulation of gene expression in the R6/2 model of polyglutamine disease: parallel changes in muscle and brain. Hum Mol Genet. 2002 Aug 15;11(17):1911-1926. [PubMed]
  45. Luthi-Carter R, Strand AD, Hanson SA, Kooperberg C, Schilling G, La Spada AR, Merry DE, Young AB, Ross CA, Borchelt DR, Olson JM. Polyglutamine and transcription: gene expression changes shared by DRPLA and Huntington's disease mouse models reveal context-independent effects.  Hum Mol Genet. 2002 Aug 15;11(17):1927-1937. [PubMed][web supplement]
  46. Chan EY, Luthi-Carter R, Strand A, Solano SM, Hanson SA, DeJohn MM, Kooperberg C, Chase KO, DiFiglia M, Young AB, Leavitt BR, Cha JH, Aronin N, Hayden MR, Olson JM. Increased huntingtin protein length reduces the number of polyglutamine-induced gene expression changes in mouse models of Huntington's disease. Hum Mol Genet. 2002 Aug 15;11(17):1939-1951. [PubMed]
  47. Xu XL, Olson JM, Zhao LP. A regression-based method to identify differentially expressed genes in microarray time course studies and its application in an inducible Huntington's disease transgenic model. Hum Mol Genet. 2002 Aug 15;11(17):1977-85. [PubMed]
  48. Kobori N, Clifton G, Dash P. Altered expression of novel genes in the cerebral cortex following experimental brain injury. Brain Res Mol Brain Res. 2002 Aug 1;104(2):148. [PubMed]
  49. Sebert ME, Palmer LM, Rosenberg M, Weiser JN. Microarray-Based Identification of htrA, a Streptococcus pneumoniae Gene That Is Regulated by the CiaRH Two-Component System and Contributes to Nasopharyngeal Colonization. Infect Immun. 2002 Aug;70(8):4059-4067. [PubMed]
  50. Sonis ST, Scherer J, Phelan S, Lucey CA, Barron JE, O'Donnell KE, Brennan RJ, Pan H, Busse P, Haley JD. The gene expression sequence of radiated mucosa in an animal mucositis model. Cell Prolif. 2002 Aug;35 Suppl 1:93-102. [PubMed]
  51. Nur T, Peijnenburg AA, Noteborn HP, Baykus H, Reifen R. DNA microarray technology reveals similar gene expression patterns in rats with vitamin a deficiency and chemically induced colitis. J Nutr. 2002 Aug;132(8):2131-6. [PubMed]
  52. Stein T, Schluter M, Galante A, Soteropoulos P, Tolias P, Grindeland R, Moran M, Wang T, Polansky M, Wade C. Energy metabolism pathways in rat muscle under conditions of simulated microgravity. J Nutr Biochem. 2002 Aug;13(8):471. [PubMed]
  53. Yajima N, Masuda M, Miyazaki M, Nakajima N, Chien S, Shyy JY. Oxidative stress is involved in the development of experimental abdominal aortic aneurysm: A study of the transcription profile with complementary DNA microarray. J Vasc Surg. 2002 Aug;36(2):379-385. [PubMed]
  54. Carroll JM, McElwee KJ, E King L, Byrne MC, Sundberg JP. Gene array profiling and immunomodulation studies define a cell-mediated immune response underlying the pathogenesis of alopecia areata in a mouse model and humans. J Invest Dermatol. 2002 Aug;119(2):392-402. [PubMed]
  55. Tabuchi Y, Zhao QL, Kondo T. DNA microarray analysis of differentially expressed genes responsive to bisphenol A, an alkylphenol derivative, in an in vitro mouse Sertoli cell model. Jpn J Pharmacol. 2002 Aug;89(4):413-6. [PubMed]
  56. D'Agata V, Warren S, Zhao W, Torre E, Alkon D, Cavallaro S. Gene expression profiles in a transgenic animal model of fragile x syndrome. Neurobiol Dis. 2002 Aug;10(3):211. [PubMed]
  57. Jenkins ES, Broadhead C. The implications of microarray technology for animal use in scientific research. Altern Lab Anim. 2002 Jul-Aug;30(4):361-2. [PubMed]
  58. Ko JS, Na DS, Lee YH, Shin SY, Kim JH, Hwang BG, Min BI, Park DS. cDNA microarray analysis of the differential gene expression in the neuropathic pain and electroacupuncture treatment models.  J Biochem Mol Biol. 2002 Jul 31;35(4):420-7. [PubMed]
  59. Tachibana T, Noguchi K, Ruda MA. Analysis of gene expression following spinal cord injury in rat using complementary DNA microarray. Neurosci Lett 2002 Jul 19; 327:133-137. [PubMed]
  60. Cui CY, Durmowicz M, Tanaka TS, Hartung AJ, Tezuka T, Hashimoto K, Ko MS, Srivastava AK, Schlessinger D. EDA targets revealed by skin gene expression profiles of wild-type, Tabby and Tabby EDA-A1 transgenic mice. Hum Mol Genet. 2002 Jul 15;11(15):1763-1773. [PubMed]
  61. Inoue K, Matsuda K, Itoh M, Kawaguchi H, Tomoike H, Aoyagi T, Nagai R, Hori M, Nakamura Y, Tanaka T. Osteopenia and male-specific sudden cardiac death in mice lacking a zinc transporter gene, Znt5. Hum Mol Genet. 2002 Jul 15;11(15):1775-1784. [PubMed]
  62. Domachowske JB, Bonville CA, Easton AJ, Rosenberg HF. Differential expression of proinflammatory cytokine genes in vivo in response to pathogenic and nonpathogenic pneumovirus infections. J Infect Dis. 2002 Jul 1;186(1):8-14. [PubMed]
  63. Nambiar PR, Giardina C, Guda K, Aizu W, Raja R, Rosenberg DW. Role of the Alternating Reading Frame (P19)-p53 Pathway in an in Vivo Murine Colon Tumor Model. Cancer Res. 2002 Jul 1;62(13):3667-74. [PubMed]
  64. Dillner K, Kindblom J, Flores-Morales A, Pang ST, Tornell J, Wennbo H, Norstedt G. Molecular characterization of prostate hyperplasia in prolactin-transgenic mice by using cDNA representational difference analysis*. Prostate. 2002 Jul 1;52(2):139-49. [PubMed]
  65. Suzuki J, Shen WJ, Nelson BD, Selwood SP, Murphy GM Jr, Kanefara H, Takahashi S, Oida K, Miyamori I, Kraemer FB. Cardiac gene expression profile and lipid accumulation in response to starvation. Am J Physiol Endocrinol Metab. 2002 Jul;283(1):E94-E102. [PubMed]
  66. Liu S, Gallo DJ, Green AM, Williams DL, Gong X, Shapiro RA, Gambotto AA, Humphris EL, Vodovotz Y, Billiar TR. Role of toll-like receptors in changes in gene expression and NF-kappaB activation in mouse hepatocytes stimulated with lipopolysaccharide. Infect Immun. 2002 Jul;70(7):3433-42. [PubMed]
  67. Stier Jr CT. Microarray analysis of gene expression in vascular smooth muscle cells from spontaneously hypertensive rats at an early age. J Hypertens. 2002 Jul;20(7):1259-61. [PubMed]
  68. Hu WY, Fukuda N, Kanmatsuse K. Growth characteristics, angiotensin II generation, and microarray-determined gene expression in vascular smooth muscle cells from young spontaneously hypertensive rats. J Hypertens. 2002 Jul;20(7):1323-33. [PubMed]
  69. Yussman MG, Toyokawa T, Odley A, Lynch RA, Wu G, Colbert MC, Aronow BJ, Lorenz JN, Dorn GW. Mitochondrial death protein Nix is induced in cardiac hypertrophy and triggers apoptotic cardiomyopathy. Nat Med 2002 Jul;8(7):725-30 [PubMed]
  70. Li HS, Doyle WJ, Swarts JD, Hebda PA. Suppression of epithelial ion transport transcripts during pneumococcal acute otitis media in the rat. Acta Otolaryngol. 2002 Jul;122(5):488-94. [PubMed]

In vitro studies

  1. Mauser A, Holley-Guthrie E, Zanation A, Yarborough W, Kaufmann W, Klingelhutz A, Seaman WT, Kenney S. The Epstein-Barr Virus Immediate-Early Protein BZLF1 Induces Expression of E2F-1 and Other Proteins Involved in Cell Cycle Progression in Primary Keratinocytes and Gastric Carcinoma Cells. J Virol. 2002 Dec 15;76(24):12543-12552. [PubMed]
  2. Yang WC, Devi-Rao GV, Ghazal P, Wagner EK, Triezenberg SJ. General and Specific Alterations in Programming of Global Viral Gene Expression during Infection by VP16 Activation-Deficient Mutants of Herpes Simplex Virus Type 1. J Virol. 2002 Dec 15;76(24):12758-12774. [PubMed]
  3. FitzPatrick DR, Ramsay J, McGill NI, Shade M, Carothers AD, Hastie ND. Transcriptome analysis of human autosomal trisomy. Hum Mol Genet. 2002 Dec 15;11(26):3249-56. [PubMed]
  4. Nagasako T, Sugiyama T, Mizushima T, Miura Y, Kato M, Asaka M. Upregulated Smad5 mediates apoptosis of gastric epithelial cells induced by Helicobacter pylori infection. J Biol Chem. 2002 Dec 6 [epub ahead of print] [PubMed]
  5. Li Y, Sarkar F. Down-regulation of invasion and angiogenesis-related genes identified by cDNA microarray analysis of PC3 prostate cancer cells treated with genistein. Cancer Lett. 2002 Dec 5;186(2):157. [PubMed]
  6. Park WY, Hwang CI, Im CN, Kang MJ, Woo JH, Kim JH, Kim YS, Kim JH, Kim H, Kim KA, Yu HJ, Lee SJ, Lee YS, Seo JS. Identification of radiation-specific responses from gene expression profile. Oncogene. 2002 Dec 5;21(55):8521-8. [PubMed]
  7. Mizuki M, Schwaeble J, Steur C, Choudhary C, Agrawal S, Sargin B, Steffen B, Matsumura I, Kanakura Y, Boehmer FD, Mueller-Tidow C, Berdel WE, Serve H. Suppression of myeloid transcription factors and induction of STAT response genes by AML-specific Flt3 mutations. Blood. 2002 Dec 5 [epub ahead of print] [PubMed]
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  19. Weigel AL, Handa JT, Hjelmeland LM. Microarray analysis of H(2)O(2)-, HNE-, or tBH-treated ARPE-19 cells. Free Radic Biol Med. 2002 Nov 15;33(10):1419-32. [PubMed]
  20. Gildea JJ, Seraj MJ, Oxford G, Harding MA, Hampton GM, Moskaluk CA, Frierson HF, Conaway MR, Theodorescu D. RhoGDI2 Is an Invasion and Metastasis Suppressor Gene in Human Cancer. Cancer Res. 2002 Nov 15;62(22):6418-23. [PubMed]
  21. Delsite R, Kachhap S, Anbazhagan R, Gabrielson E, Singh KK. Nuclear genes involved in mitochondria-to-nucleus communication in breast cancer cells. Mol Cancer 2002 Nov 12;1(1):6 [epub ahead of print] [PubMed]
  22. Zhang X, Chen Z, Huang H, Gordon J, Xiang J. DNA microarray analysis of the gene expression profiles of naive versus activated tumor-specific T cells. Life Sci. 2002 Nov 8;71(25):3005. [PubMed]
  23. Traynor J, Agarwal P, Lazzeroni L, Francke U. Gene expression patterns vary in clonal cell cultures from Rett syndrome females with eight different MECP2 mutations. BMC Med Genet 2002 Nov 5;3(1):12 [PubMed][pdf]
  24. Wei SJ, Trempus CS, Cannon RE, Bortner CD, Tennant RW. Identification of Dss1 as a TPA-responsive gene expressed in keratinocyte progenitor cells, with possible involvement in early skin tumorigenesis. J Biol Chem. 2002 Nov 4 [epub ahead of print] [PubMed]
  25. Sakakura C, Hagiwara A, Nakanishi M, Shimomura K, Takagi T, Yasuoka R, Fujita Y, Abe T, Ichikawa Y, Takahashi S, Ishikawa T, Nishizuka I, Morita T, Shimada H, Okazaki Y, Hayashizaki Y, Yamagishi H. Differential gene expression profiles of gastric cancer cells established from primary tumour and malignant ascites. Br J Cancer. 2002 Nov 4;87(10):1153-61. [PubMed]
  26. Yuyama N, Davies DE, Akaiwa M, Matsui K, Hamasaki Y, Suminami Y, Yoshida NL, Maeda M, Pandit A, Lordan JL, Kamogawa Y, Arima K, Nagumo F, Sugimachi M, Berger A, Richards I, Roberds SL, Yamashita T, Kishi F, Kato H, Arai KI, Ohshima K, Tadano J, Hamasaki N, Miyatake S, Sugita Y, Holgate ST, Izuhara K. Analysis of novel disease-related genes in bronchial asthma. Cytokine. 2002 Nov;19(6):287-96. [PubMed]
  27. Chay CH, Cooper CR, Gendernalik JD, Dhanasekaran SM, Chinnaiyan AM, Rubin MA, Schmaier AH, Pienta KJ. A functional thrombin receptor (PAR1) is expressed on bone-derived prostate cancer cell lines.Urology. 2002 Nov;60(5):760-5. [PubMed]
  28. Baran-Marszak F, Fagard R, Girard B, Camilleri-Broet S, Zeng F, Lenoir GM, Raphael M, Feuillard J.  Gene Array Identification of Epstein Barr Virus-Regulated Cellular Genes in EBV-Converted Burkitt Lymphoma Cell Lines.  Lab Invest. 2002 Nov;82(11):1463-79. [PubMed]
  29. Hu D, Cao K, Peterson-Wakeman R, Wang R. Altered profile of gene expression in rat hearts induced by chronic nicotine consumption. Biochem Biophys Res Commun. 2002 Oct 4;297(4):729. [PubMed]
  30. De Vos J, Thykjaer T, Tarte K, Ensslen M, Raynaud P, Requirand G, Pellet F, Pantesco V, Reme T, Jourdan M, Rossi JF, ORntoft T, Klein B. Comparison of gene expression profiling between malignant and normal plasma cells with oligonucleotide arrays. Oncogene. 2002 Oct 3;21(44):6848-6857. [PubMed]
  31. Mamane Y, Grandvaux N, Hernandez E, Sharma S, Innocente SA, Lee JM, Azimi N, Lin R, Hiscott J. Repression of IRF-4 target genes in human T cell leukemia virus-1 infection. Oncogene. 2002 Oct 3;21(44):6751-65. [PubMed]
  32. Carter KL, Cahir-McFarland E, Kieff E. Epstein-barr virus-induced changes in B-lymphocyte gene expression. J Virol. 2002 Oct;76(20):10427-36. [PubMed]
  33. Spector A, Li D, Ma W, Sun F, Pavlidis P. Differential amplification of gene expression in lens cell lines conditioned to survive peroxide stress. Invest Ophthalmol Vis Sci. 2002 Oct;43(10):3251-64. [PubMed]
  34. Wilson KS, Roberts H, Leek R, Harris AL, Geradts J. Differential Gene Expression Patterns in HER2/neu-Positive and -Negative Breast Cancer Cell Lines and Tissues. Am J Pathol. 2002 Oct;161(4):1171-85. [PubMed]
  35. Rice AM, Currier MA, Adams LC, Bharatan NS, Collins MH, Snyder JD, Khan J, Cripe TP. Ewing sarcoma family of tumors express adenovirus receptors and are susceptible to adenovirus-mediated oncolysis. J Pediatr Hematol Oncol. 2002 Oct;24(7):527-33. [PubMed]
  36. Wang J, Chen S. Screening and identification of gastric adenocarcinoma metastasis-related genes using cDNA microarray coupled to FDD-PCR. J Cancer Res Clin Oncol. 2002 Oct;128(10):547-53. [PubMed]
  37. Arendt BK, Velazquez-Dones A, Tschumper RC, Howell KG, Ansell SM, Witzig TE, Jelinek DF. Interleukin 6 induces monocyte chemoattractant protein-1 expression in myeloma cells. Leukemia. 2002 Oct;16(10):2142-7. [PubMed]
  38. Salnikow K, Davidson T, Costa M. The role of hypoxia-inducible signaling pathway in nickel carcinogenesis. Environ Health Perspect. 2002 Oct;110 Suppl 5:831-4. [PubMed]
  39. Jin K, Mao XO, Eshoo MW, del Rio G, Rao R, Chen D, Simon RP, Greenberg DA. cDNA microarray analysis of changes in gene expression induced by neuronal hypoxia in vitro. Neurochem Res. 2002 Oct;27(10):1105-12. [PubMed]
  40. Kaszubska W, Falls H, Schaefer V, Haasch D, Frost L, Hessler P, Kroeger P, White D, Jirousek M, Trevillyan J. Protein tyrosine phosphatase 1B negatively regulates leptin signaling in a hypothalamic cell line. Mol Cell Endocrinol. 2002 Sep 30;195(1-2):109. [PubMed]
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  42. Schwering I, Brauninger A, Klein U, Jungnickel B, Tinguely M, Diehl V, Hansmann ML, Dalla-Favera R, Rajewsky K, Kuppers R. Loss of the B lineage-specific gene expression program in Hodgkin and Reed/Sternberg cells of Hodgkin's lymphoma. Blood. 2002 Sep 26 [epub ahead of print] [PubMed]
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Basic science studies

  1. Pedram A, Razandi M, Aitkenhead M, Hughes CC, Levin ER. Integration of the non-genomic and genomic actions of estrogen: Membrane initiated signaling by steroid (MISS) to transcription and cell biology. J Biol Chem 2002 Dec 27;277(52):50768-75 [PubMed]
  2. Zeng Q, McCauley LK, Wang CY. Hepatocyte growth factor inhibits anoikis by induction of AP-1-dependent cyclooxygenase-2 : Implication in head and neck squamous cell carcinoma progression. J Biol Chem 2002 Dec 20;277(51):50137-50142 [PubMed]
  3. Malcolm KC, Arndt PG, Manos EJ, Jones DA, Worthen GS. Microarray analysis of lipopolysaccharide-treated human neutrophils. Am J Physiol Lung Cell Mol Physiol. 2002 Dec 20 [epub ahead of print] [PubMed]
  4. Schlaak JF, Hilkens CM, Costa-Pereira AP, Strobl B, Aberger F, Frischauf AM, Kerr IM. Cell-type and Donor-specific Transcriptional Responses to Interferon-alpha. USE OF CUSTOMIZED GENE ARRAYS. J Biol Chem. 2002 Dec 20;277(51):49428-49437. [PubMed]
  5. Raghavan A, Ogilvie RL, Reilly C, Abelson ML, Raghavan S, Vasdewani J, Krathwohl M, Bohjanen PR. Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes. Nucleic Acids Res. 2002 Dec 15;30(24):5529-38. [PubMed]
  6. Cavallaro S, D'Agata V, Manickam P, Dufour F, Alkon DL. Memory-specific temporal profiles of gene expression in the hippocampus. Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):16279-84. [PubMed]
  7. Delaunay F, Laudet V. Circadian clock and microarrays: mammalian genome gets rhythm. Trends Genet 2002 Dec; 18:595 [PubMed]
  8. Stulnig TM, Steffensen KR, Gao H, Reimers M, Dahlman-Wright K, Schuster GU, Gustafsson JA. Novel roles of liver X receptors exposed by gene expression profiling in liver and adipose tissue. Mol Pharmacol. 2002 Dec;62(6):1299-305. [PubMed]
  9. Myers C, Charboneau A, Cheung I, Hanks D, Boudreau N. Sustained expression of homeobox d10 inhibits angiogenesis. Am J Pathol. 2002 Dec;161(6):2099-109. [PubMed]
  10. Tanaka TS, Kunath T, Kimber WL, Jaradat SA, Stagg CA, Usuda M, Yokota T, Niwa H, Rossant J, Ko MS. Gene expression profiling of embryo-derived stem cells reveals candidate genes associated with pluripotency and lineage specificity. Genome Res. 2002 Dec;12(12):1921-8. [PubMed]
  11. Endo Y, Fu Z, Abe K, Arai S, Kato H. Dietary protein quantity and quality affect rat hepatic gene expression. J Nutr. 2002 Dec;132(12):3632-7. [PubMed]
  12. Vaes BL, Dechering KJ, Feijen A, Hendriks JM, Lefevre C, Mummery CL, Olijve W, van Zoelen EJ, Steegenga WT. Comprehensive microarray analysis of bone morphogenetic protein 2-induced osteoblast differentiation resulting in the identification of novel markers for bone development. J Bone Miner Res. 2002 Dec;17(12):2106-18. [PubMed]
  13. de Jong DS, van Zoelen EJ, Bauerschmidt S, Olijve W, Steegenga WT. Microarray analysis of bone morphogenetic protein, transforming growth factor beta, and activin early response genes during osteoblastic cell differentiation. J Bone Miner Res. 2002 Dec;17(12):2119-29. [PubMed]
  14. Lindberg MK, Moverare S, Eriksson AL, Skrtic S, Gao H, Dahlman-Wright K, Gustafsson JA, Ohlsson C. Identification of estrogen-regulated genes of potential importance for the regulation of trabecular bone mineral density. J Bone Miner Res. 2002 Dec;17(12):2183-95. [PubMed]
  15. Luo Y, Cai J, Liu Y, Xue H, Chrest FJ, Wersto RP, Rao M. Microarray analysis of selected genes in neural stem and progenitor cells. J Neurochem. 2002 Dec;83(6):1481-97. [PubMed]
  16. McLean DJ, Friel PJ, Pouchnik D, Griswold MD. Oligonucleotide microarray analysis of gene expression in follicle-stimulating hormone-treated rat sertoli cells. Mol Endocrinol. 2002 Dec;16(12):2780-92. [PubMed]
  17. Elliott SF, Coon CI, Hays E, Stadheim TA, Vincenti MP. Bcl-3 is an interleukin-1-responsive gene in chondrocytes and synovial fibroblasts that activates transcription of the matrix metalloproteinase 1 gene. Arthritis Rheum. 2002 Dec;46(12):3230-9. [PubMed]
  18. Vinuesa CG, Cook MC, Cooke MP, Maclennan IC, Goodnow CC. Analysis of B Cell Memory Formation Using DNA Microarrays. Ann N Y Acad Sci. 2002 Dec;975:33-45. [PubMed]
  19. Verdeil G, Puthier D, Nguyen C, Schmitt-Verhulst AM, Auphan-Anezin N. Gene Profiling Approach to Establish the Molecular Bases for Partial versus Full Activation of Naive CD8 T Lymphocytes. Ann N Y Acad Sci. 2002 Dec;975:68-76. [PubMed]
  20. Bandman O, Coleman RT, Loring JF, Seilhamer JJ, Cocks BG. Complexity of Inflammatory Responses in Endothelial Cells and Vascular Smooth Muscle Cells Determined by Microarray Analysis. Ann N Y Acad Sci. 2002 Dec;975:77-90. [PubMed]
  21. Richards J, Le Naour F, Hanash S, Beretta L. Integrated Genomic and Proteomic Analysis of Signaling Pathways in Dendritic Cell Differentiation and Maturation. Ann N Y Acad Sci. 2002 Dec;975:91-100. [PubMed]
  22. Verdeil G, Puthier D, Nguyen C, Schmitt-Verhulst AM, Auphan-Anezin N. Gene Profiling Approach to Establish the Molecular Bases for Partial versus Full Activation of Naive CD8 T Lymphocytes. Ann N Y Acad Sci. 2002 Dec;975:68-76. [PubMed]
  23. Lee SW, Kwak HB, Lee HC, Lee SK, Kim HH, Lee ZH. The Anti-proliferative Gene TIS21 Is Involved in Osteoclast Differentiation. J Biochem Mol Biol. 2002 Nov 30;35(6):609-14. [PubMed]
  24. Gracey AY, Cossins AR. Application of Microarray Technology in Environmental and Comparative Physiology. Annu Rev Physiol. 2002 Nov 19 [epub ahead of print] [PubMed]
  25. Chen ZY, Corey DP. Understanding inner ear development with gene expression profiling. J Neurobiol. 2002 Nov 5;53(2):276-285. [PubMed]
  26. Gu Y, Byrne MC, Paranavitana NC, Aronow B, Siefring JE, D'Souza M, Horton HF, Quilliam LA, Williams DA. Rac2, a Hematopoiesis-Specific Rho GTPase, Specifically Regulates Mast Cell Protease Gene Expression in Bone Marrow-Derived Mast Cells. Mol Cell Biol. 2002 Nov 1;22(21):7645-7657. [PubMed]
  27. Nagarajan UM, Bushey A, Boss JM. Modulation of Gene Expression by the MHC Class II Transactivator. J Immunol. 2002 Nov 1;169(9):5078-5088. [PubMed]
  28. Hilpert