My microarray journal watch - year 2002 Jan-Jun  [ this week | 2004 Oct-Dec | 2004 Jul-Sep | 2004 Apr-Jun | 2004 Jan-Mar | 2003 Oct-Dec | 2003 Jul-Sep | 2003 Apr-Jun | 2003 Jan-Mar | 2002 Jul-Dec | 2002 Jan-Jun | 2001 Jul-Dec | 2001 Jan-Jun | 2000 | 1999 | 1998 | 1997 | 1996 & before ]

General
Human disease studies
   Disease screening, profiling and classification
   Diagnosis and clinical application
   Animal model studies
   In vitro studies
Basic science studies
   Human
   Animal
   Plant
   Microbiology
Genome scale studies
   Network/pathway reconstruction and analysis
Genetic analysis
   ArrayCGH
Pharmacogenomics and pharmacogenetics
Toxicogenomics
Technical development
Other related technical issue; microdissection; linear amplification of RNA (aRNA)
Experimental design, sample size & power
Data analysis
   Oligo design for array manufacturing
   Image analysis
   Normalization
   Pattern recognition, classification & data mining by unsupervised methods
   Pattern recognition, classification & data mining by supervised methods
   Network/pathway reconstruction and analysis
   Statistical significance of analysis
   Software
Database
Tissue microarray
Protein array
Biochip/lab-on-a-chip/micro-Total Analysis System (uTAS)
Other array platforms		 Can't find the microarray article published in 2002 in my site? 
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General

  1. Causton H. Applications of microarrays. Trends Mol Med. 2002 Jun;8(6):308. [PubMed]
  2. Shoemaker DD, Linsley PS. Recent developments in DNA microarrays. Curr Opin Microbiol. 2002 Jun; 5:334-337 [PubMed]
  3. Soll D, Strosberg D. Genome-wide technologies — the first half of the story. Curr Opin Microbiol. 2002 Jun; 5: 311-312. [PubMed]
  4. Afshari CA. Perspective: microarray technology, seeing more than spots. Endocrinology. 2002 Jun;143(6):1983-9. [PubMed]
  5. Brooksbank C. Web Watch: Microarray mania. Nat Rev Cancer. 2002 Jun;2(6):405. [PubMed]
  6. Schaechter M, Ingraham JL. What limits genomics, proteomics, transcriptomics? Int Microbiol. 2002 Jun;5(2):51-2. [PubMed]
  7. Broude NE. Differential display in the time of microarrays. Expert Rev Mol Diagn. 2002 May;2(3):209-16. [PubMed]
  8. Hardiman G. Microarray Technologies - An Overview. Pharmacogenomics. 2002 May;3(3):293. [PubMed]
  9. Gershon D. Microarray technology: An array of opportunities. Nature. 2002 Apr 25;416(6883):885-91. [PubMed]
  10. Firestein GS, Pisetsky DS. DNA microarrays: Boundless technology or bound by technology? Guidelines for studies using microarray technology. Arthritis Rheum. 2002 Apr;46(4):859-61. [PubMed]
  11. Foster WR, Huber RM. Current themes in microarray experimental design and analysis. Drug Discov Today. 2002 Mar 1;7(5):290-292. [PubMed]
  12. Arcellana-Panlilio M, Robbins SM. I. Global gene expression profiling using DNA microarrays.  Am J Physiol Gastrointest Liver Physiol. 2002 Mar;282(3):G397-402. [PubMed]
  13. Xiang CC, Chen Y. cDNA microarray technology and its applications. Biotechnol Adv. 2000 Mar;18(1):35-46. [PubMed]
  14. Jansen RC, Nap JP, Mlynarova L. Errors in genomics and proteomics.Nat Biotechnol. 2002 Jan 1;20(1):19. [PubMed]
  15. Li X, Gu W, Mohan S, Baylink DJ. DNA microarrays: their use and misuse. Microcirculation. 2002 Jan;9(1):13-22. [PubMed]
  16. Johnson KF, Lin SM. Microarray analysis: a comparative approach. Mol Cancer Ther. 2002 Jan;1(3):237-8. [PubMed]
  17. Roy S, Khanna S, Bentley K, Beffrey P, Sen CK. Functional genomics: high-density oligonucleotide arrays. Methods Enzymol. 2002;353:487-97. [PubMed]
  18. Iida K, Nishimura I. Gene expression profiling by DNA microarray technology. Crit Rev Oral Biol Med. 2002;13(1):35-50. [PubMed]
  19. Heller MJ. DNA MICROARRAY TECHNOLOGY: Devices, Systems, and Applications. Annu Rev Biomed Eng. 2002;4:129-53. [PubMed]
  20. Burgess JK, McParland BE. Analysis of gene expression. Methods Enzymol. 2002;356:259-70. [PubMed]

Human disease studies

  1. Soulet D, Rivest S. Perspective: How to Make Microarray, Serial Analysis of Gene Expression, and Proteomic Relevant to Day-to-Day Endocrine Problems and Physiological Systems. Endocrinology. 2002 Jun;143(6):1995-2001. [PubMed]
  2. Walder K, Segal D, Chehab S, Augert G, Cameron-Smith D, Hargreaves M, Collier GR. A Custom-Built Insulin Resistance Gene Chip. Ann N Y Acad Sci. 2002 Jun;967:274-282. [PubMed]
  3. Schaid DJ. Genetic epidemiology and microarrays. Genet Epidemiol. 2002 Jun;23(1):1-3. [PubMed]
  4. Dalma-Weiszhausz DD, Chicurel ME, Gingeras TR. Microarrays and genetic epidemiology: A multipurpose tool for a multifaceted field.  Genet Epidemiol. 2002 Jun;23(1):4-20. [PubMed]
  5. Gu CC, Rao DC, Stormo G, Hicks C, Province MA. Role of gene expression microarray analysis in finding complex disease genes. Genet Epidemiol. 2002 Jun;23(1):37-56. [PubMed]
  6. Ye SQ, Lavoie T, Usher DC, Zhang LQ. Microarray, SAGE and their applications to cardiovascular diseases. Cell Res. 2002 Jun;12(2):105-15. [PubMed]
  7. Haslett J, Kunkel L. Microarray analysis of normal and dystrophic skeletal muscle. Int J Dev Neurosci. 2002 Jun;20(3-5):359. [PubMed]
  8. Natarajan K, Shepard LA, Chodosh J. The use of DNA array technology in studies of ocular viral pathogenesis. DNA Cell Biol. 2002 May-Jun;21(5-6):483-90. [PubMed]
  9. Haviv I, Campbell IG. DNA microarrays for assessing ovarian cancer gene expression. Mol Cell Endocrinol. 2002 May 31;191(1):121-6. [PubMed]
  10. Gene expression and cancer: getting it together. Nat Genet. 2002 May;31(1):1-2. [PubMed]
  11. Williams NM, O'Donovan MC, Owen MJ. Genome scans and microarrays: converging on genes for schizophrenia? Genome Biol 2002 May; 3(4):reviews1011.1-1011.5 [PubMed]
  12. Ring BZ, Ross DT. Microarrays and molecular markers for tumor classification. Genome Biol 2002 May;3(5):comment2005.1-2005.6  [PubMed]
  13. Anzick SL, Trent JM. Role of genomics in identifying new targets for cancer therapy. Oncology (Huntingt). 2002 May;16(5 Suppl 4):7-13. [PubMed]
  14. Falkai P, Poustka A. The use of the microarray-technology in schizophrenia. Eur Psychiatry. 2002 May;17 Suppl 1:24. [PubMed]
  15. Harris RA, Mayfield RD, Lewohl J, Dodd P. Microarray analysis of brain gene expression in human alcoholism. Eur Psychiatry. 2002 May;17 Suppl 1:33. [PubMed]
  16. Orr MS, Scherf U. Large-scale gene expression analysis in molecular target discovery. Leukemia. 2002 Apr;16(4):473-7. [PubMed]
  17. Watchko J, Daood M, Biniwale M. Understanding neonatal hyperbilirubinaemia in the era of genomics. Semin Neonatol. 2002 Apr;7(2):143. [PubMed]
  18. Cheval L, Virlon B, Billon E, Aude JC, Elalouf JM, Doucet A. Large-scale analysis of gene expression: methods and application to the kidney. J Nephrol. 2002 Mar-Apr;15 Suppl 5:S170-83. [PubMed]
  19. Denton MD, Yoshida T, Hsiao LL, Jenson RV, Gullans SR. DNA microarrays: applicability to renal physiology and disease. J Nephrol. 2002 Mar-Apr;15 Suppl 5:S184-91. [PubMed]
  20. Bashyam MD. Understanding cancer metastasis: an urgent need for using differential gene expression analysis. Cancer. 2002 Mar 15;94(6):1821-9. [PubMed]
  21. Giudice LC, Telles TL, Lobo S, Kao L. The molecular basis for implantation failure in endometriosis: on the road to discovery. Ann N Y Acad Sci. 2002 Mar;955:252-64; discussion 293-5, 396-406. [PubMed]
  22. Agostini C, Miorin M, Semenzato G. Gene expression profile analysis by DNA microarrays: a new approach to assess functional genomics in diseases.  Sarcoidosis Vasc Diffuse Lung Dis. 2002 Mar;19(1):5-9. [PubMed]
  23. Kipps TJ. Advances in classification and therapy of indolent B-cell malignancies. Semin Oncol. 2002 Feb;29(1 Suppl 2):98-104. [PubMed]
  24. Rowe D, Lichtler A. A strategy for identifying osteoporosis risk genes. Endocrine. 2002 Feb;17(1):67-75. [PubMed]
  25. Ho SM, Lau KM. DNA microarrays in prostate cancer. Curr Urol Rep. 2002 Feb;3(1):53-60. [PubMed]
  26. Zhang W, Wang H, Song SW, Fuller GN. Insulin-like growth factor binding protein 2: gene expression microarrays and the hypothesis-generation paradigm. Brain Pathol. 2002 Jan;12(1):87-94. [PubMed]
  27. Hanash SM, Bobek MP, Rickman DS, Williams T, Rouillard JM, Kuick R, Puravs E. Integrating cancer genomics and proteomics in the post-genome era. Proteomics. 2002 Jan;2(1):69-75. [PubMed]
  28. Swerdlow SH, Williams ME. From centrocytic to mantle cell lymphoma: A clinicopathologic and molecular review of 3 decades. Hum Pathol. 2002 Jan;33(1):7-20. [PubMed]
  29. Rathod PK, Ganesan K, Hayward RE, Bozdech Z, DeRisi JL. DNA microarrays for malaria. Trends Parasitol. 2002 Jan;18(1):39-45. [PubMed]
  30. Bottinger EP, Ju W, Zavadil J. Applications for microarrays in renal biology and medicine. Exp Nephrol. 2002;10(2):93-101. [PubMed]
  31. Del Rio JA, Barlow C. Genomics and neurological phenotypes: applications for seizure-induced damage. Prog Brain Res. 2002;135:149-60. [PubMed]
  32. Becker AJ, Wiestler OD, Blumcke I. Functional genomics in experimental and human temporal lobe epilepsy: powerful new tools to identify molecular disease mechanisms of hippocampal damage. Prog Brain Res. 2002;135:161-73. [PubMed]
  33. Yin L, Li J, Zhu H, Lin M, Cheng L, Wang Y, Zhou Z, Sha J. Identification and characterization of a gene coding a novel isoform of DEAD-box protein. Reprod Fertil Dev. 2002;14(3-4):185-9. [PubMed]

Disease screening, profiling and classification

  1. Magrath I. Molecular characteristics of diffuse large-B-cell lymphoma. N Engl J Med. 2002 Jun 20;346(25):1998-9. [PubMed]
  2. Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, Fisher RI, Gascoyne RD, Muller-Hermelink HK, Smeland EB, Giltnane JM, Hurt EM, Zhao H, Averett L, Yang L, Wilson WH, Jaffe ES, Simon R, Klausner RD, Powell J, Duffey PL, Longo DL, Greiner TC, Weisenburger DD, Sanger WG, Dave BJ, Lynch JC, Vose J, Armitage JO, Montserrat E, Lopez-Guillermo A, Grogan TM, Miller TP, LeBlanc M, Ott G, Kvaloy S, Delabie J, Holte H, Krajci P, Stokke T, Staudt LM. The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med. 2002 Jun 20;346(25):1937-47. [PubMed]
  3. Bayani J, Brenton JD, Macgregor PF, Beheshti B, Albert M, Nallainathan D, Karaskova J, Rosen B, Murphy J, Laframboise S, Zanke B, Squire JA. Parallel analysis of sporadic primary ovarian carcinomas by spectral karyotyping, comparative genomic hybridization, and expression microarrays. Cancer Res. 2002 Jun 15;62(12):3466-76. [PubMed]
  4. Lin YM, Furukawa Y, Tsunoda T, Yue CT, Yang KC, Nakamura Y. Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas. Oncogene. 2002 Jun 13;21(26):4120-8. [PubMed]
  5. Mukasa A, Ueki K, Matsumoto S, Tsutsumi S, Nishikawa R, Fujimaki T, Asai A, Kirino T, Aburatani H. Distinction in gene expression profiles of oligodendrogliomas with and without allelic loss of 1p. Oncogene. 2002 Jun 6;21(25):3961-8. [PubMed]
  6. Merrell DS, Butler SM, Qadri F, Dolganov NA, Alam A, Cohen MB, Calderwood SB, Schoolnik GK, Camilli A. Host-induced epidemic spread of the cholera bacterium. Nature. 2002 Jun 6;417(6889):642-5. [PubMed]
  7. Fritz B, Schubert F, Wrobel G, Schwaenen C, Wessendorf S, Nessling M, Korz C, Rieker RJ, Montgomery K, Kucherlapati R, Mechtersheimer G, Eils R, Joos S, Lichter P. Microarray-based Copy Number and Expression Profiling in Dedifferentiated and Pleomorphic Liposarcoma. Cancer Res. 2002 Jun 1;62(11):2993-8. [PubMed]
  8. Shi H, Yan PS, Chen CM, Rahmatpanah F, Lofton-Day C, Caldwell CW, Huang TH. Expressed CpG island sequence tag microarray for dual screening of DNA hypermethylation and gene silencing in cancer cells. Cancer Res. 2002 Jun 1;62(11):3214-20. [PubMed]
  9. Miura K, Bowman ED, Simon R, Peng AC, Robles AI, Jones RT, Katagiri T, He P, Mizukami H, Charboneau L, Kikuchi T, Liotta LA, Nakamura Y, Harris CC. Laser Capture Microdissection and Microarray Expression Analysis of Lung Adenocarcinoma Reveals Tobacco Smoking- and Prognosis-related  Molecular Profiles. Cancer Res. 2002 Jun 1;62(11):3244-3250. [PubMed]
  10. Yagyu R, Hamamoto R, Furukawa Y, Okabe H, Yamamura T, Nakamura Y. Isolation and characterization of a novel human gene, VANGL1, as a therapeutic target for hepatocellular carcinoma. Int J Oncol. 2002 Jun;20(6):1173-8. [PubMed]
  11. Sreekumar R, Halvatsiotis P, Schimke JC, Nair KS. Gene expression profile in skeletal muscle of type 2 diabetes and the effect of insulin treatment. Diabetes. 2002 Jun;51(6):1913-20. [PubMed]
  12. Medh RD. Microarray-based expression profiling of normal and malignant immune cells. Endocr Rev. 2002 Jun;23(3):393-400. [PubMed]
  13. Barrans JD, Allen PD, Stamatiou D, Dzau VJ, Liew CC.  Global gene expression profiling of end-stage dilated cardiomyopathy using a human cardiovascular-based cDNA microarray. Am J Pathol. 2002 Jun;160(6):2035-43. [PubMed]
  14. Ernst T, Hergenhahn M, Kenzelmann M, Cohen CD, Bonrouhi M, Weninger A, Klaren R, Grone EF, Wiesel M, Gudemann C, Kuster J, Schott W, Staehler G, Kretzler M, Hollstein M, Grone HJ. Decrease and Gain of Gene Expression Are Equally Discriminatory Markers for Prostate Carcinoma : A Gene Expression Analysis on Total and Microdissected Prostate Tissue. Am J Pathol. 2002 Jun;160(6):2169-2180. [PubMed]
  15. Yan PS, Efferth T, Chen HL, Lin J, Rodel F, Fuzesi L, Huang TH. Use of CpG island microarrays to identify colorectal tumors with a high degree of concurrent methylation. Methods. 2002 Jun;27(2):162-9. [PubMed]
  16. Chen X, Cheung ST, So S, Fan ST, Barry C, Higgins J, Lai KM, Ji J, Dudoit S, Ng IO, Van De Rijn M, Botstein D, Brown PO. Gene expression patterns in human liver cancers. Mol Biol Cell. 2002 Jun;13(6):1929-39. [PubMed]
  17. Suzuki H, Gabrielson E, Chen W, Anbazhagan R, Van Engeland M, Weijenberg MP, Herman JG, Baylin SB. A genomic screen for genes upregulated by demethylation and histone deacetylase inhibition in human colorectal cancer. Nat Genet 2002 Jun;31(2):141-9 [PubMed]
  18. Prakash K, Pirozzi G, Elashoff M, Munger W, Waga I, Dhir R, Kakehi Y, Getzenberg RH. Symptomatic and asymptomatic benign prostatic hyperplasia: Molecular differentiation by using microarrays. Proc Natl Acad Sci U S A. 2002 May 28;99(11):7598-603. [PubMed][pdf]
  19. Ritter MR, Dorrell MI, Edmonds J, Friedlander SF, Friedlander M. Insulin-like growth factor 2 and potential regulators of hemangioma growth and involution identified by large-scale expression analysis. Proc Natl Acad Sci U S A. 2002 May 28;99(11):7455-60. [PubMed][pdf][web supplement]
  20. Dickens DS, Kozielski R, Khan J, Forus A, Cripe TP. Cyclooxygenase-2 Expression in Pediatric Sarcomas. Pediatr Dev Pathol. 2002 May 24 [epub ahead of print] [PubMed]
  21. Bangur CS, Switzer A, Fan L, Marton MJ, Meyer MR, Wang T. Identification of genes over-expressed in small cell lung carcinoma using suppression subtractive hybridization and cDNA microarray expression analysis. Oncogene. 2002 May 23;21(23):3814-25. [PubMed]
  22. Luo J, Dunn T, Ewing C, Sauvageot J, Chen Y, Trent J, Isaacs W. Gene expression signature of benign prostatic hyperplasia revealed by cDNA microarray analysis. Prostate 2002 May 15;51(3):189-200 [PubMed]
  23. Nesic O, Svrakic NM, Xu GY, McAdoo D, Westlund KN, Hulsebosch CE, Ye Z, Galante A, Soteropoulos P, Tolias P, Young W, Hart RP, Perez-Polo JR. DNA microarray analysis of the contused spinal cord: Effect of NMDA receptor inhibition. J Neurosci Res 2002 May 15;68(4):406-23 [PubMed]
  24. Varis A, Wolf M, Monni O, Vakkari ML, Kokkola A, Moskaluk C, Frierson H Jr, Powell SM, Knuutila S, Kallioniemi A, El-Rifai W. Targets of gene amplification and overexpression at 17q in gastric cancer. Cancer Res. 2002 May 1;62(9):2625-9. [PubMed]
  25. Tompkins SM, Miller SD. An array of possibilities for multiple sclerosis. Nat Med. 2002 May;8(5):451-3. [PubMed]
  26. Lock C, Hermans G, Pedotti R, Brendolan A, Schadt E, Garren H, Langer-Gould A, Strober S, Cannella B, Allard J, Klonowski P, Austin A, Lad N, Kaminski N, Galli SJ, Oksenberg JR, Raine CS, Heller R, Steinman L. Gene-microarray analysis of multiple sclerosis lesions yields new targets validated in autoimmune encephalomyelitis. Nat Med. 2002 May;8(5):500-8. [PubMed][web supplement]
  27. Young GD, Winokur TS, Cerfolio RJ, Van Tine BA, Chow LT, Okoh V, Garver RI. Differential expression and biodistribution of cytokeratin 18 and desmoplakins in non-small cell lung carcinoma subtypes. Lung Cancer. 2002 May;36(2):133-41. [PubMed]
  28. Zhao J, Roth J, Bode-Lesniewska B, Pfaltz M, Heitz PU, Komminoth P. Combined comparative genomic hybridization and genomic microarray for detection of gene amplifications in pulmonary artery intimal sarcomas and adrenocortical tumors. Genes Chromosomes Cancer. 2002 May;34(1):48-57. [PubMed]
  29. Luzina IG, Atamas SP, Wise R, Wigley FM, Xiao HQ, White B. Gene expression in bronchoalveolar lavage cells from scleroderma patients. Am J Respir Cell Mol Biol. 2002 May;26(5):549-57. [PubMed]
  30. Terris B, Blaveri E, Crnogorac-Jurcevic T, Jones M, Missiaglia E, Ruszniewski P, Sauvanet A, Lemoine NR. Characterization of gene expression profiles in intraductal papillary-mucinous tumors of the pancreas. Am J Pathol. 2002 May;160(5):1745-54. [PubMed]
  31. Li H, Jie S, Zou P, Zou G. CDNA microarray analysis of chronic myeloid leukemia. Int J Hematol. 2002 May;75(4):388-93. [PubMed]
  32. Stremmel C, Wein A, Hohenberger W, Reingruber B. DNA microarrays: a new diagnostic tool and its implications in colorectal cancer. Int J Colorectal Dis. 2002 May;17(3):131-6. [PubMed]
  33. Mayfield RD, Lewohl JM, Dodd PR, Herlihy A, Liu J, Harris RA. Patterns of gene expression are altered in the frontal and motor cortices of human alcoholics. J Neurochem. 2002 May;81(4):802-13. [PubMed]
  34. Zuo F, Kaminski N, Eugui E, Allard J, Yakhini Z, Ben-Dor A, Lollini L, Morris D, Kim Y, DeLustro B, Sheppard D, Pardo A, Selman M, Heller RA. Gene expression analysis reveals matrilysin as a key regulator of pulmonary fibrosis in mice and humans.  Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6292-6297. [PubMed][pdf][web supplement]
  35. Al Moustafa AE, Alaoui-Jamali MA, Batist G, Hernandez-Perez M, Serruya C, Alpert L, Black MJ, Sladek R, Foulkes WD. Identification of genes associated with head and neck carcinogenesis by cDNA microarray comparison between matched primary normal epithelial and squamous carcinoma cells. Oncogene. 2002 Apr 18;21(17):2634-40. [PubMed]
  36. Dirix LY, van Oosterom AT. Gene-expression profiling to classify soft-tissue sarcomas. Lancet. 2002 Apr 13;359(9314):1263-4. [PubMed]
  37. Nielsen TO, West RB, Linn SC, Alter O, Knowling MA, O'Connell JX, Zhu S, Fero M, Sherlock G, Pollack JR, Brown PO, Botstein D, van de Rijn M. Molecular characterisation of soft tissue tumours: a gene expression study. Lancet. 2002 Apr 13;359(9314):1301-7. [PubMed]
  38. Benson M, Carlsson B, Carlsson LM, Mostad P, Svensson PA, Cardell LO. DNA MICROARRAY ANALYSIS OF TRANSFORMING GROWTH FACTOR-beta AND RELATED TRANSCRIPTS IN NASAL BIOPSIES FROM PATIENTS WITH ALLERGIC RHINITIS. Cytokine. 2002 Apr 7;18(1):20-5. [PubMed]
  39. Agrawal D, Chen T, Irby R, Quackenbush J, Chambers AF, Szabo M, Cantor A, Coppola D, Yeatman TJ. Osteopontin identified as lead marker of colon cancer progression, using pooled sample expression profiling. J Natl Cancer Inst. 2002 Apr 3;94(7):513-21. [PubMed]
  40. Kim JH, Skates SJ, Uede T, Wong Kk KK, Schorge JO, Feltmate CM, Berkowitz RS, Cramer DW, Mok SC. Osteopontin as a potential diagnostic biomarker for ovarian cancer. JAMA. 2002 Apr 3;287(13):1671-9. [PubMed]
  41. Rubin MA, Zhou M, Dhanasekaran SM, Varambally S, Barrette TR, Sanda MG, Pienta KJ, Ghosh D, Chinnaiyan AM. alpha-Methylacyl Coenzyme A Racemase as a Tissue Biomarker for Prostate Cancer. JAMA. 2002 Apr 3;287(13):1662-70. [PubMed]
  42. Huang JZ, Sanger WG, Greiner TC, Staudt LM, Weisenburger DD, Pickering DL, Lynch JC, Armitage JO, Warnke RA, Alizadeh AA, Lossos IS, Levy R, Chan WC.  The t(14;18) defines a unique subset of diffuse large B-cell lymphoma with a germinal center B-cell gene expression profile. Blood. 2002 Apr 1;99(7):2285-2290. [PubMed]
  43. Middleton FA, Mirnics K, Pierri JN, Lewis DA, Levitt P. Gene expression profiling reveals alterations of specific metabolic pathways in schizophrenia. J Neurosci. 2002 Apr 1;22(7):2718-29. [PubMed]
  44. O'Neill L. Microarray analysis reveals osteopontin as important player in MS. Trends Immunol. 2002 Apr 1;23(4):178. [PubMed]
  45. Middleton FA, Mirnics K, Pierri JN, Lewis DA, Levitt P. Gene expression profiling reveals alterations of specific metabolic pathways in schizophrenia. J Neurosci. 2002 Apr 1;22(7):2718-29. [PubMed]
  46. Shmulevich I, Hunt K, El-Naggar A, Taylor E, Ramdas L, Laborde P, Hess KR, Pollock R, Zhang W. Tumor specific gene expression profiles in human leiomyosarcoma: an evaluation of intratumor heterogeneity. Cancer. 2002 Apr 1;94(7):2069-75. [PubMed]
  47. Klein CA, Seidl S, Petat-Dutter K, Offner S, Geigl JB, Schmidt-Kittler O, Wendler N, Passlick B, Huber RM, Schlimok G, Baeuerle PA, Riethmuller G. Combined transcriptome and genome analysis of single micrometastatic cells. Nat Biotechnol. 2002 Apr;20(4):387-92. [PubMed][web supplement]
  48. Schaefer KL, Wai D, Poremba C, Diallo R, Boecker W, Dockhorn-Dworniczak B. Analysis of TP53 germline mutations in pediatric tumor patients using DNA microarray-based sequencing technology. Med Pediatr Oncol. 2002 Apr;38(4):247-53. [PubMed]
  49. Iacobuzio-Donahue CA, Maitra A, Shen-Ong GL, van Heek T, Ashfaq R, Meyer R, Walter K, Berg K, Hollingsworth MA, Cameron JL, Yeo CJ, Kern SE, Goggins M, Hruban RH. Discovery of novel tumor markers of pancreatic cancer using global gene expression technology. Am J Pathol. 2002 Apr;160(4):1239-49. [PubMed]
  50. Jiang Y, Harlocker SL, Molesh DA, Dillon DC, Stolk JA, Houghton RL, Repasky EA, Badaro R, Reed SG, Xu J. Discovery of differentially expressed genes in human breast cancer using subtracted cDNA libraries and cDNA microarrays. Oncogene. 2002 Mar 28;21(14):2270-82. [PubMed]
  51. Cheng Q, Lau WM, Tay SK, Chew SH, Ho TH, Hui KM. Identification and characterization of genes involved in the carcinogenesis of human squamous cell cervical carcinoma. Int J Cancer. 2002 Mar 20;98(3):419-26. [PubMed]
  52. Bouras T, Southey MC, Chang AC, Reddel RR, Willhite D, Glynne R, Henderson MA, Armes JE, Venter DJ. Stanniocalcin 2 Is an Estrogen-responsive Gene Coexpressed with the Estrogen Receptor in Human Breast Cancer. Cancer Res. 2002 Mar 1;62(5):1289-95. [PubMed]
  53. Rus V, Atamas SP, Shustova V, Luzina IG, Selaru F, Magder LS, Via CS. Expression of cytokine- and chemokine-related genes in peripheral blood mononuclear cells from lupus patients by cDNA array. Clin Immunol. 2002 Mar;102(3):283-90. [PubMed]
  54. Magee TR, Qian A, Rajfer J, Sander FC, Levine LA, Gonzalez-Cadavid NF. Gene expression profiles in the Peyronie's disease plaque. Urology. 2002 Mar;59(3):451-457. [PubMed]
  55. Powell CA, Xu G, Filmus J, Busch S, Brody JS, Rothman PB. Oligonucleotide microarray analysis of lung adenocarcinoma in smokers and nonsmokers identifies GPC3 as a potential lung tumor suppressor. Chest. 2002 Mar;121(3 Suppl):6S-7S. [PubMed]
  56. Pold M, Dohadwala M, Luo J, Lin Y, Dubinett S. Microarray Identifies Cyclo-oxygenase-2-Dependent Modulation of Insulin-like Growth Factor Binding Protein-3 in Non-small Cell Lung Cancer Cells. Chest. 2002 Mar;121(3 Suppl):29S-30S. [PubMed]
  57. Olman MA, White KE, Ware LB, Cross MT, Zhu S, Matthay MA. Microarray analysis indicates that pulmonary edema fluid from patients with acute lung injury mediates inflammation, mitogen gene expression, and fibroblast proliferation through bioactive interleukin-1.  Chest. 2002 Mar;121(3 Suppl):69S-70S. [PubMed]
  58. Hunter S, Young A, Olson J, Brat DJ, Bowers G, Wilcox JN, Jaye D, Mendrinos S, Neish A. Differential expression between pilocytic and anaplastic astrocytomas: identification of apolipoprotein D as a marker for low-grade, non-infiltrating primary CNS neoplasms. J Neuropathol Exp Neurol. 2002 Mar;61(3):275-81. [PubMed]
  59. Assersohn L, Gangi L, Zhao Y, Dowsett M, Simon R, Powles TJ, Liu ET. The feasibility of using fine needle aspiration from primary breast cancers for cDNA microarray analyses. Clin Cancer Res. 2002 Mar;8(3):794-801. [PubMed]
  60. Sheppard D. Uses of expression microarrays in studies of pulmonary fibrosis, asthma, acute lung injury, and emphysema : roger s. Mitchell lecture. Chest. 2002 Mar;121(3 Suppl):21S-5S. [PubMed]
  61. Singh D, Febbo PG, Ross K, Jackson DG, Manola J, Ladd C, Tamayo P, Renshaw AA, D'Amico AV, Richie JP, Lander ES, Loda M, Kantoff PW, Golub TR, Sellers WR. Gene expression correlates of clinical prostate cancer behavior. Cancer Cell. 2002 Mar;1(2):203-9. [PubMed]
  62. Belbin TJ, Singh B, Barber I, Socci N, Wenig B, Smith R, Prystowsky MB, Childs G. Molecular classification of head and neck squamous cell carcinoma using cDNA microarrays. Cancer Res. 2002 Feb 15;62(4):1184-90. [PubMed]
  63. Brown VM, Ossadtchi A, Khan AH, Cherry SR, Leahy RM, Smith DJ. High-throughput imaging of brain gene expression. Genome Res. 2002 Feb;12(2):244-54. [PubMed][web supplement]
  64. Qi ZY, Li Y, Ying K, Wu CQ, Tang R, Zhou ZX, Chen ZP, Hui GZ, Xie Y. Isolation of novel differentially expressed genes related to human glioma using cDNA microarray and characterizations of two novel full-length genes. J Neurooncol. 2002 Feb;56(3):197-208. [PubMed]
  65. Pomeroy SL, Tamayo P, Gaasenbeek M, Sturla LM, Angelo M, McLaughlin ME, Kim JY, Goumnerova LC, Black PM, Lau C, Allen JC, Zagzag D, Olson JM, Curran T, Wetmore C, Biegel JA, Poggio T, Mukherjee S, Rifkin R, Califano A, Stolovitzky G, Louis DN, Mesirov JP, Lander ES, Golub TR. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature. 2002 Jan 24;415(6870):436-42. [PubMed][web supplement]
  66. Selaru FM, Zou T, Xu Y, Shustova V, Yin J, Mori Y, Sato F, Wang S, Olaru A, Shibata D, Greenwald BD, Krasna MJ, Abraham JM, Meltzer SJ. Global gene expression profiling in Barrett's esophagus and esophageal cancer: a comparative analysis using cDNA microarrays. Oncogene. 2002 Jan 17;21(3):475-8. [PubMed]
  67. Hippo Y, Taniguchi H, Tsutsumi S, Machida N, Chong JM, Fukayama M, Kodama T, Aburatani H. Global Gene Expression Analysis of Gastric Cancer by Oligonucleotide Microarrays. Cancer Res. 2002 Jan 1;62(1):233-240. [PubMed]
  68. Smith DI. Transcriptional profiling develops molecular signatures for ovarian tumors. Cytometry. 2002 Jan 1;47(1):60-2. [PubMed]
  69. Eyster KM, Boles AL, Brannian JD, Hansen KA. DNA microarray analysis of gene expression markers of endometriosis. Fertil Steril. 2002 Jan;77(1):38-42. [PubMed]
  70. Furushima K, Shimo-Onoda K, Maeda S, Nobukuni T, Ikari K, Koga H, Komiya S, Nakajima T, Harata S, Inoue I. Large-scale screening for candidate genes of ossification of the posterior longitudinal ligament of the spine. J Bone Miner Res. 2002 Jan;17(1):128-37. [PubMed]
  71. Chinnaiyan AM, Rubin MA. Gene-Expression Profiles in Hereditary Breast Cancer: On: Gene-expression profiles in hereditary breast cancer. Hedenfalk I, Duggan, D, Chen Y, et al. N Engl J Med 2001;344:539-48. Adv Anat Pathol. 2002 Jan;9(1):1-6. [PubMed]
  72. Armstrong SA, Staunton JE, Silverman LB, Pieters R, den Boer ML, Minden MD, Sallan SE, Lander ES, Golub TR, Korsmeyer SJ. MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia. Nat Genet 2002 Jan; 30:41-47. [PubMed][web supplement]
  73. Van't Veer LJ, De Jong D. The microarray way to tailored cancer treatment. Nat Med. 2002 Jan; 8:13-14 [PubMed]
  74. Shipp MA, Ross KN, Tamayo P, Weng AP, Kutok JL, Aguiar RC, Gaasenbeek M, Angelo M, Reich M, Pinkus GS, Ray TS, Koval MA, Last KW, Norton A, Lister TA, Mesirov J, Neuberg DS, Lander ES, Aster JC, Golub TR. Diffuse large B-cell lymphoma outcome prediction by gene expression profiling and supervised machine learning. Nat Med. 2002 Jan; 8: 68-74 [PubMed]
  75. Mori M, Mimori K, Yoshikawa Y, Shibuta K, Utsunomiya T, Sadanaga N, Tanaka F, Matsuyama A, Inoue H, Sugimachi K. Analysis of the gene-expression profile regarding the progression of human gastric carcinoma.  Surgery. 2002 Jan;131(1 Pt 2):S39-47. [PubMed]
  76. Ahram M, Best CJ, Flaig MJ, Gillespie JW, Leiva IM, Chuaqui RF, Zhou G, Shu H, Duray PH, Linehan WM, Raffeld M, Ornstein DK, Zhao Y, Petricoin EF 3rd, Emmert-Buck MR. Proteomic analysis of human prostate cancer. Mol Carcinog. 2002 Jan;33(1):9-15. [PubMed]
  77. Haase D, Lehmann MH, Ko?rner MM, Ko?rfer R, Sigusch HH, Figulla HR. Identification and validation of selective upregulation of ventricular myosin light chain type 2 mRNA in idiopathic dilated cardiomyopathy. Eur J Heart Fail. 2002 Jan;4(1):23-31. [PubMed]
  78. Mori M, Mimori K, Yoshikawa Y, Shibuta K, Utsunomiya T, Sadanaga N, Tanaka F, Matsuyama A, Inoue H, Sugimachi K. Analysis of the gene-expression profile regarding the progression of human gastric carcinoma. Surgery. 2002 Jan;131(1 Pt 2):S39-47. [PubMed]
  79. Luo JH, Yu YP, Cieply K, Lin F, Deflavia P, Dhir R, Finkelstein S, Michalopoulos G, Becich M. Gene expression analysis of prostate cancers. Mol Carcinog. 2002 Jan;33(1):25-35. [PubMed]
  80. Neumann E, Kullmann F, Judex M, Justen HP, Wessinghage D, Gay S, Scholmerich J, Muller-Ladner U. Identification of differentially expressed genes in rheumatoid arthritis by a combination of complementary DNA array and RNA arbitrarily primed-polymerase chain reaction. Arthritis Rheum. 2002 Jan;46(1):52-63. [PubMed]
  81. Nishizuka I, Ishikawa T, Hamaguchi Y, Kamiyama M, Ichikawa Y, Kadota K, Miki R, Tomaru Y, Mizuno Y, Tominaga N, Yano R, Goto H, Nitanda H, Togo S, Yasushi Y, Hayashizaki Y, Shimada H. Analysis of gene expression involved in brain metastasis from breast cancer using cDNA microarray. Breast Cancer. 2002;9(1):26-32. [PubMed]
  82. Alcorta D, Preston G, Munger W, Sullivan P, Yang JJ, Waga I, Jennette JC, Falk R. Microarray studies of gene expression in circulating leukocytes in kidney diseases. Exp Nephrol. 2002;10(2):139-49. [PubMed]
  83. Chen HW, Li HN, Lee YT, Yang PC, Chen JJ, Tzeng CR. Global analysis of differentially expressed genes in endometrium with or without endometriosis using human cDNA microarray. Fertil Steril. 2002 Feb;77 Suppl 1:S16. [PubMed]
  84. Morita T, Togo S, Kubota T, Kamimukai N, Nishizuka I, Kobayashi T, Ichikawa Y, Ishikawa T, Takahashi S, Matsuo K, Tomaru Y, Okazaki Y, Hayashizaki Y, Shimada H. Mechanism of postoperative liver failure after excessive hepatectomy investigated using a cDNA microarray. J Hepatobiliary Pancreat Surg. 2002;9(3):352-9. [PubMed]
  85. Omoto Y, Hayashi S. A study of estrogen signaling using DNA microarray in human breast cancer. Breast Cancer. 2002;9(4):308-11. [PubMed]

Diagnosis and clinical practice

  1. Lin YM, Furukawa Y, Tsunoda T, Yue CT, Yang KC, Nakamura Y. Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas. Oncogene. 2002 Jun 13;21(26):4120-8. [PubMed]
  2. Yagyu R, Hamamoto R, Furukawa Y, Okabe H, Yamamura T, Nakamura Y. Isolation and characterization of a novel human gene, VANGL1, as a therapeutic target for hepatocellular carcinoma. Int J Oncol. 2002 Jun;20(6):1173-8. [PubMed]
  3. Thompson CJ, Tam NN, Joyce JM, Leav I, Ho SM. Gene expression profiling of testosterone and estradiol-17 beta-induced prostatic dysplasia in Noble rats and response to the antiestrogen ICI 182,780. Endocrinology. 2002 Jun;143(6):2093-105. [PubMed]
  4. Stenger DA, Andreadis JD, Vora GJ, Pancrazio JJ. Potential applications of DNA microarrays in biodefense-related diagnostics. Curr Opin Biotechnol. 2002 Jun; 13:208-212. [PubMed]
  5. Fortina P, Surrey S, Kricka LJ. Molecular diagnostics: hurdles for clinical implementation. Trends Mol Med. 2002 Jun;8(6):264-6. [PubMed]
  6. Bustin SA, Dorudi S. The value of microarray techniques for quantitative gene profiling in molecular diagnostics. Trends Mol Med. 2002 Jun;8(6):269-72. [PubMed]
  7. Rosenwald A, Staudt LM. Clinical translation of gene expression profiling in lymphomas and leukemias. Semin Oncol. 2002 Jun;29(3):258-63. [PubMed]
  8. Pollack JR, Van de Rijn M, Botstein D. Challenges in developing a molecular characterization of cancer. Semin Oncol. 2002 Jun;29(3):280-5. [PubMed]
  9. Fey MF. Impact of the Human Genome Project on the clinical management of sporadic cancers. Lancet Oncol. 2002 Jun;3(6):349-56. [PubMed]
  10. Liefers GJ, Tollenaar RA. Cancer genetics and their application to individualised medicine. Eur J Cancer. 2002 May;38(7):872-9. [PubMed]
  11. Ellis M, Davis N, Coop A, Liu M, Schumaker L, Lee RY, Srikanchana R, Russell CG, Singh B, Miller WR, Stearns V, Pennanen M, Tsangaris T, Gallagher A, Liu A, Zwart A, Hayes DF, Lippman ME, Wang Y, Clarke R. Development and Validation of a Method for Using Breast Core Needle Biopsies for Gene Expression Microarray Analyses. Clin Cancer Res. 2002 May;8(5):1155-1166. [PubMed]
  12. Stremmel C, Wein A, Hohenberger W, Reingruber B. DNA microarrays: a new diagnostic tool and its implications in colorectal cancer. Int J Colorectal Dis. 2002 May;17(3):131-6. [PubMed]
  13. Ring BZ, Ross DT. Microarrays and molecular markers for tumor classification. Genome Biol. 2002 May;3(5):comment2005. [PubMed]
  14. Ramaswamy S, Golub TR. DNA microarrays in clinical oncology. J Clin Oncol. 2002 Apr 1;20(7):1932-41. [PubMed]
  15. Adorjan P, Distler J, Lipscher E, Model F, Muller J, Pelet C, Braun A, Florl AR, Gutig D, Grabs G, Howe A, Kursar M, Lesche R, Leu E, Lewin A, Maier S, Muller V, Otto T, Scholz C, Schulz WA, Seifert HH, Schwope I, Ziebarth H, Berlin K, Piepenbrock C, Olek A. Tumour class prediction and discovery by microarray-based DNA methylation analysis. Nucl acid Res. 2002 Mar 1; 30:e21 [PubMed][web supplement]
  16. Selaru FM, Xu Y, Yin J, Zou T, Liu TC, Mori Y, Abraham JM, Sato F, Wang S, Twigg C, Olaru A, Shustova V, Leytin A, Hytiroglou P, Shibata D, Harpaz N, Meltzer SJ. Artificial neural networks distinguish among subtypes of neoplastic colorectal lesions. Gastroenterology. 2002 Mar;122(3):606-13. [PubMed]
  17. Assersohn L, Gangi L, Zhao Y, Dowsett M, Simon R, Powles TJ, Liu ET. The feasibility of using fine needle aspiration from primary breast cancers for cDNA microarray analyses. Clin Cancer Res. 2002 Mar;8(3):794-801. [PubMed]
  18. Brown VM, Ossadtchi A, Khan AH, Gambhir SS, Cherry SR, Leahy RM, Smith DJ. Gene expression tomography. Physiol Genomics. 2002 Feb 28;8(2):159-167. [PubMed]
  19. Sotiriou C, Khanna C, Jazaeri AA, Petersen D, Liu ET. Core Biopsies Can Be Used to Distinguish Differences in Expression Profiling by cDNA Microarrays. J Mol Diagn. 2002 Feb;4(1):30-36. [PubMed]
  20. Kipps TJ. Advances in classification and therapy of indolent B-cell malignancies. Semin Oncol. 2002 Feb;29(1 Suppl 2):98-104. [PubMed]
  21. Todd R, Wong DT. DNA hybridization arrays for gene expression analysis of human oral cancer. J Dent Res. 2002 Feb;81(2):89-97. [PubMed]
  22. Lacroix M, Zammatteo N, Remacle J, Leclercq G. A low-density DNA microarray for analysis of markers in breast cancer. Int J Biol Markers. 2002 Jan-Mar;17(1):5-23. [PubMed]
  23. Macoska JA. The progressing clinical utility of DNA microarrays. CA Cancer J Clin. 2002 Jan-Feb;52(1):50-9. [PubMed]
  24. Kim CJ, Reintgen DS, Yeatman TJ. The promise of microarray technology in melanoma care. Cancer Control. 2002 Jan-Feb;9(1):49-53. [PubMed]
  25. Caldas C, Aparicio SA. The molecular outlook. Nature 2002 Jan 31; 415:484-485 [PubMed]
  26. van 't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M, Peterse HL, van der Kooy K, Marton MJ, Witteveen AT, Schreiber GJ, Kerkhoven RM, Roberts C, Linsley PS, Bernards R, Friend SH. Gene expression profiling predicts clinical outcome of breast cancer. Nature 2002 Jan 31; 415: 530-536 [PubMed][web supplement]
  27. Pomeroy SL, Tamayo P, Gaasenbeek M, Sturla LM, Angelo M, McLaughlin ME, Kim JY, Goumnerova LC, Black PM, Lau C, Allen JC, Zagzag D, Olson JM, Curran T, Wetmore C, Biegel JA, Poggio T, Mukherjee S, Rifkin R, Califano A, Stolovitzky G, Louis DN, Mesirov JP, Lander ES, Golub TR. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature. 2002 Jan 24;415(6870):436-42. [PubMed][web supplement]
  28. Ahr A, Karn T, Solbach C, Seiter T, Strebhardt K, Holtrich U, Kaufmann M. Identification of high risk breast-cancer patients by gene expression profiling. Lancet. 2002 Jan 12;359(9301):131-2. [PubMed]
  29. Van't Veer LJ, De Jong D. The microarray way to tailored cancer treatment. Nat Med. 2002 Jan; 8:13-14 [PubMed]
  30. Shipp MA, Ross KN, Tamayo P, Weng AP, Kutok JL, Aguiar RC, Gaasenbeek M, Angelo M, Reich M, Pinkus GS, Ray TS, Koval MA, Last KW, Norton A, Lister TA, Mesirov J, Neuberg DS, Lander ES, Aster JC, Golub TR. Diffuse large B-cell lymphoma outcome prediction by gene expression profiling and supervised machine learning. Nat Med. 2002 Jan; 8: 68-74 [PubMed]
  31. Zammatteo N, Lockman L, Brasseur F, De Plaen E, Lurquin C, Lobert PE, Hamels S, Boon T, Remacle J. DNA Microarray to Monitor the Expression of MAGE-A Genes. Clin Chem 2002 Jan; 48: 25-34 [PubMed]
  32. Hedenfak IA, Ringner M, Trent JM, Borg A. Gene expression in inherited breast cancer. Adv Cancer Res. 2002;84:1-34. [PubMed]
  33. Sotiriou C, Powles TJ, Dowsett M, Jazaeri AA, Feldman AL, Assersohn L, Gadisetti C, Libutti SK, Liu ET. Gene expression profiles derived from fine needle aspiration correlate with response to systemic chemotherapy in breast cancer. Breast Cancer Res. 2002;4(3):R3. [PubMed][pdf]
  34. Zammatteo N, Hamels S, De Longueville F, Alexandre I, Gala JL, Brasseur F, Remacle J. New chips for molecular biology and diagnostics. Biotechnol Annu Rev. 2002;8:85-101. [PubMed]

Animal model studies

  1. Kaushal D, Schroeder BG, Tyagi S, Yoshimatsu T, Scott C, Ko C, Carpenter L, Mehrotra J, Manabe YC, Fleischmann RD, Bishai WR. Reduced immunopathology and mortality despite tissue persistence in a Mycobacterium tuberculosis mutant lacking alternative sigma factor, SigH. Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8330-5. [PubMed][pdf]
  2. Xiao HS, Huang QH, Zhang FX, Bao L, Lu YJ, Guo C, Yang L, Huang WJ, Fu G, Xu SH, Cheng XP, Yan Q, Zhu ZD, Zhang X, Chen Z, Han ZG, Zhang X. Identification of gene expression profile of dorsal root ganglion in the rat peripheral axotomy model of neuropathic pain. Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8360-8365. [PubMed][pdf][web supplement]
  3. Lin CS, Ho HC, Chen KC, Lin G, Nunes L, Lue TF. Intracavernosal injection of vascular endothelial growth factor induces nitric oxide synthase isoforms. BJU Int. 2002 Jun;89(9):955-960. [PubMed]
  4. Koike E, Hirano S, Shimojo N, Kobayashi T. cDNA Microarray Analysis of Gene Expression in Rat Alveolar Macrophages in Response to Organic Extract of Diesel Exhaust Particles. Toxicol Sci. 2002 Jun;67(2):241-246. [PubMed]
  5. Wittwer M, Fluck M, Hoppeler H, Muller S, Desplanches D, Billeter R. Prolonged unloading of rat soleus muscle causes distinct adaptations of the gene profile. FASEB J. 2002 Jun;16(8):884-886. [PubMed]
  6. Higaki S, Gebhardt BM, Lukiw WJ, Thompson HW, Hill JM. Effect of Immunosuppression on Gene Expression in the HSV-1 Latently Infected Mouse Trigeminal Ganglion. Invest Ophthalmol Vis Sci. 2002 Jun;43(6):1862-1869. [PubMed]
  7. Brown VM, Ossadtchi A, Khan AH, Yee S, Lacan G, Melega WP, Cherry SR, Leahy RM, Smith DJ. Multiplex three-dimensional brain gene expression mapping in a mouse model of Parkinson's disease. Genome Res. 2002 Jun;12(6):868-84. [PubMed]
  8. Saban MR, Nguyen NB, Hammond TG, Saban R. Gene expression profiling of mouse bladder inflammatory responses to LPS, substance p, and antigen-stimulation. Am J Pathol. 2002 Jun;160(6):2095-110. [PubMed]
  9. Li CM, Guo M, Borczuk A, Powell CA, Wei M, Thaker HM, Friedman R, Klein U, Tycko B. Gene expression in wilms' tumor mimics the earliest committed stage in the metanephric mesenchymal-epithelial transition. Am J Pathol. 2002 Jun;160(6):2181-90. [PubMed]
  10. Toyooka K, Usui M, Washiyama K, Kumanishi T, Takahashi Y. Gene expression profiles in the brain from phencyclidine-treated mouse by using DNA microarray. Ann N Y Acad Sci. 2002 Jun;965:10-20. [PubMed]
  11. Onaivi ES, Ali SF, Chirwa SS, Zwiller J, Thiriet N, Akinshola BE, Ishiguro H. Ibogaine Signals Addiction Genes and Methamphetamine Alteration of Long-Term Potentiation. Ann N Y Acad Sci. 2002 Jun;965:28-46. [PubMed]
  12. Saiura A, Kohro T, Yamamoto T, Izumi A, Wada Y, Aburatani H, Sugawara Y, Hamakubo T, Taniguchi T, Naito M, Kodama T, Makuuchi M. Detection of an up-regulation of a group of chemokine genes in murine cardiac allograft in the absence of interferon-gamma by means of DNA microarray1. Transplantation. 2002 May 15;73(9):1480-1486. [PubMed]
  13. Azuma T, Takei M, Yoshikawa T, Nagasugi Y, Kato M, Otsuka M, Shiraiwa H, Sugano S, Mitamura K, Sawada S, Masuho Y, Seki N. Identification of candidate genes for Sjogren's syndrome using MRL/lpr mouse model of Sjogren's syndrome and cDNA microarray analysis. Immunol Lett. 2002 May 1;81(3):171-6. [PubMed]
  14. Yoshida T, Kurella M, Beato F, Min H, Ingelfinger JR, Stears RL, Swinford RD, Gullans SR, Tang SS. Monitoring changes in gene expression in renal ischemia-reperfusion in the rat. Kidney Int. 2002 May;61(5):1646-1654. [PubMed]
  15. Zou J, Young S, Zhu F, Gheyas F, Skeans S, Wan Y, Wang L, Ding W, Billah M, McClanahan T, Coffman RL, Egan R, Umland S. Microarray profile of differentially expressed genes in a monkey model of allergic asthma. Genome Biol 2002 May; 3(5):research0020.1-0020.13 [PubMed][pdf]
  16. Saiura A, Kohro T, Yamamoto T, Izumi A, Wada Y, Aburatani H, Sugawara Y, Hamakubo T, Taniguchi T, Naito M, Kodama T, Makuuchi M. Detection of an up-regulation of a group of chemokine genes in murine cardiac allograft in the absence of interferon-gamma by means of DNA microarray. Transplantation. 2002 May 15;73(9):1480-6. [PubMed]
  17. Philpott DJ, Belaid D, Troubadour P, Thiberge JM, Tankovic J, Labigne A, Ferrero RL. Reduced activation of inflammatory responses in host cells by mouse-adapted Helicobacter pylory isolates. Cell Microbiol. 2002 May;4(5):285-96. [PubMed]
  18. Dell'Era P, Coco L, Ronca R, Sennino B, Presta M. Gene expression profile in fibroblast growth factor 2-transformed endothelial cells. Oncogene. 2002 Apr 4;21(15):2433-40. [PubMed]
  19. Kabashima K, Saji T, Murata T, Nagamachi M, Matsuoka T, Segi E, Tsuboi K, Sugimoto Y, Kobayashi T, Miyachi Y, Ichikawa A, Narumiya S. The prostaglandin receptor EP4 suppresses colitis, mucosal damage and CD4 cell activation in the gut. J Clin Invest. 2002 Apr 1;109(7):883-93. [PubMed]
  20. Choudhuri R, Cui L, Yong C, Bowyer S, Klein RM, Welch KM, Berman NE. Cortical spreading depression and gene regulation: relevance to migraine. Ann Neurol. 2002 Apr;51(4):499-506. [PubMed]
  21. Sepulveda AR, Tao H, Carloni E, Sepulveda J, Graham DY, Peterson LE. Screening of gene expression profiles in gastric epithelial cells induced by Helicobacter pylori using microarray analysis. Aliment Pharmacol Ther. 2002 Apr;16 Suppl 2:145-57. [PubMed]
  22. Wallace CA, Ali S, Glazier AM, Norsworthy PJ, Carlos DC, Scott J, Freeman TC, Stanton LW, Kwitek AE, Aitman TJ. Radiation hybrid mapping of 70 rat genes from a data set of differentially expressed genes. Mamm Genome. 2002 Apr;13(4):194-7. [PubMed]
  23. Gu W, Li X, Lau KH, Edderkaoui B, Donahae LR, Rosen CJ, Beamer WG, Shultz KL, Srivastava A, Mohan S, Baylink DJ. Gene expression between a congenic strain that contains a quantitative trait locus of high bone density from CAST/EiJ and its wild-type strain C57BL/6J. Funct Integr Genomics. 2002 Apr;1(6):375-86. [PubMed]
  24. Napoli C, de Nigris F, Welch JS, Calara FB, Stuart RO, Glass CK, Palinski W. Maternal Hypercholesterolemia During Pregnancy Promotes Early Atherogenesis in LDL Receptor-Deficient Mice and Alters Aortic Gene Expression Determined by Microarray. Circulation. 2002 Mar 19;105(11):1360-1367. [PubMed]
  25. Kennan A, Aherne A, Palfi A, Humphries M, McKee A, Stitt A, Simpson DA, Demtroder K, Orntoft T, Ayuso C, Kenna PF, Farrar GJ, Humphries P. Identification of an IMPDH1 mutation in autosomal dominant retinitis pigmentosa (RP10) revealed following comparative microarray analysis of transcripts derived from retinas of wild-type and Rho(--/--) mice. Hum Mol Genet. 2002 Mar 1;11(5):547-558. [PubMed]
  26. Matzilevich DA, Rall JM, Moore AN, Grill RJ, Dash PK. High-density microarray analysis of hippocampal gene expression following experimental brain injury. J Neurosci Res. 2002 Mar 1;67(5):646-63. [PubMed]
  27. Johnston CJ, Williams JP, Okunieff P, Finkelstein JN. Radiation-Induced Pulmonary Fibrosis: Examination of Chemokine and Chemokine Receptor Families. Radiat Res. 2002 Mar;157(3):256-265. [PubMed]
  28. Zou J, Young S, Zhu F, Xia L, Skeans S, Wan Y, Wang L, McClanahan T, Gheyas F, Wei D, Garlisi C, Jakway J, Umland S. Identification of differentially expressed genes in a monkey model of allergic asthma by microarray technology. Chest. 2002 Mar;121(3 Suppl):26S-7S. [PubMed]
  29. Okuda T, Sumiya T, Muzutani K, Tago N, Miyata T, Tanabe T, Kato H, Katsuya T, Higaki J, Ogihara T, Tsujita Y, Iwai N. Analyses of differential gene expression in genetic hypertensive rats by microarray. Hypertens Res. 2002 Mar;25(2):249-55. [PubMed]
  30. Liang M, Yuan B, Rute E, Greene AS, Zou AP, Soares P, MCQuestion GD, Slocum GR, Jacob HJ, Cowley AW Jr. Renal medullary genes in salt-sensitive hypertension: a chromosomal substitution and cDNA microarray study. Physiol Genomics. 2002 Feb 28;8(2):139-49. [PubMed]
  31. Porter JD, Khanna S, Kaminski HJ, Rao JS, Merriam AP, Richmonds CR, Leahy P, Li J, Guo W, Andrade FH. A chronic inflammatory response dominates the skeletal muscle molecular signature in dystrophin-deficient mdx mice. Hum Mol Genet. 2002 Feb 1;11(3):263-272. [PubMed]
  32. Wood WM, Sarapura VD, Dowding JM, Woodmansee WW, Haakinson DJ, Gordon DF, Ridgway EC.  Early gene expression changes preceding thyroid hormone-induced involution of a thyrotrope tumor. Endocrinology. 2002 Feb;143(2):347-59. [PubMed]
  33. Tzou P, De Gregorio E, Lemaitre B. How Drosophila combats microbial infection: a model to study innate immunity and host?pathogen interactions. Curr Opin Microbiol. 2002 Feb 1;5(1):102-110. [PubMed]
  34. Carson JA, Nettleton D, Reecy JM. Differential gene expression in the rat soleus muscle during early work overload-induced hypertrophy. FASEB J 2002 Feb;16(2):207-9 [PubMed]
  35. Eaves IA, Wicker LS, Ghandour G, Lyons PA, Peterson LB, Todd JA, Glynne RJ. Combining Mouse Congenic Strains and Microarray Gene Expression Analyses to Study a Complex Trait: The NOD Model of Type 1 Diabetes. Genome Res. 2002 Feb;12(2):232-243. [PubMed][web supplement]
  36. Nakajima T, Nakajima E, Fukiage C, Azuma M, Shearer TR. Differential gene expression in the lens epithelial cells from selenite injected rats. Exp Eye Res. 2002 Feb;74(2):231-6. [PubMed]
  37. Bosetti F, Seemann R, Bell JM, Zahorchak R, Friedman E, Rapoport SI, Manickam P. Analysis of gene expression with cDNA microarrays in rat brain after 7 and 42 days of oral lithium administration. Brain Res Bulletin. 2002 Jan 15; 57:205-209 [PubMed]
  38. McDowell SA, Mallakin A, Bachurski CJ, Toney-Earley K, Prows DR, Bruno T, Kaestner KH, Witte DP, Melin-Aldana H, Degen SJ, Leikauf GD, Waltz SE. The Role of the Receptor Tyrosine Kinase Ron in Nickel-Induced Acute Lung Injury. Am J Respir Cell Mol Biol. 2002 Jan 1;26(1):99-104. [PubMed]
  39. Balasubramaniam J, Del Bigio MR. Analysis of age-dependant alteration in the brain gene expression profile following induction of hydrocephalus in rats. Exp Neurol. 2002 Jan;173(1):105-13. [PubMed]
  40. Yoshihara T, Ishigaki S, Yamamoto M, Liang Y, Niwa Ji J, Takeuchi H, Doyu M, Sobue G. Differential expression of inflammation- and apoptosis-related genes in spinal cords of a mutant SOD1 transgenic mouse model of familial amyotrophic lateral sclerosis. J Neurochem. 2002 Jan;80(1):158-67. [PubMed]
  41. Wang HY, Song X, Huang XP, Tao J. Gene profiling of transgenic mice with targeted expression of activated heterotrimeric G protein alpha subunits using DNA microarray. Methods Enzymol. 2002;345:529-39. [PubMed]
  42. Fischer MD, Gorospe JR, Felder E, Bogdanovich S, Pedrosa-Domellof F, Ahima RS, Rubinstein NA, Hoffman EP, Khurana TS. Expression profiling reveals metabolic and structural components of extraocular muscles. Physiol Genomics. 2002;9(2):71-84. [PubMed]
  43. Wang H, Sun H, Della Penna K, Benz R, Xu J, Gerhold D, Holder D, Koblan K. Chronic neuropathic pain is accompanied by global changes in gene expression and shares pathobiology with neurodegenerative diseases. Neuroscience. 2002;114(3):529. [PubMed]

In vitro studies

  1. Nagarajan R, Le N, Mahoney H, Araki T, Milbrandt J. Deciphering peripheral nerve myelination by using Schwann cell expression profiling. Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8998-9003. [PubMed][pdf][web supplement]
  2. Ruutu M, Peitsaro P, Johansson B, Syrjanen S. Transcriptional profiling of a human papillomavirus 33-positive squamous epithelial cell line which acquired a selective growth advantage after viral integration. Int J Cancer. 2002 Jul 20;100(3):318-26. [PubMed]
  3. Niizeki H, Kobayashi M, Horiuchi I, Akakura N, Chen J, Wang J, Hamada JI, Seth P, Katoh H, Watanabe H, Raz A, Hosokawa M. Hypoxia enhances the expression of autocrine motility factor and the motility of human pancreatic cancer cells. Br J Cancer. 2002 Jun 17;86(12):1914-9. [PubMed]
  4. Scheffer GL, De Jong MC, Monks A, Flens MJ, Hose CD, Izquierdo MA, Shoemaker RH, Scheper RJ. Increased expression of beta 2-microglobulin in multidrug-resistant tumour cells. Br J Cancer. 2002 Jun 17;86(12):1943-50. [PubMed]
  5. Comerford KM, Wallace TJ, Karhausen J, Louis NA, Montalto MC, Colgan SP. Hypoxia-inducible Factor-1-dependent Regulation of the Multidrug Resistance (MDR1) Gene.  Cancer Res. 2002 Jun 15;62(12):3387-94. [PubMed]
  6. McGill GG, Horstmann M, Widlund HR, Du J, Motyckova G, Nishimura EK, Lin YL, Ramaswamy S, Avery W, Ding HF, Jordan SA, Jackson IJ, Korsmeyer SJ, Golub TR, Fisher DE. Bcl2 regulation by the melanocyte master regulator mitf modulates lineage survival and melanoma cell viability. Cell. 2002 Jun 14;109(6):707-18. [PubMed]
  7. De La Fuente C, Santiago F, Deng L, Eadie C, Zilberman I, Kehn K, Maddukuri A, Baylor S, Wu K, Lee C, Pumfery A, Kashanchi F. Gene expression profile of HIV-1 Tat expressing cells: a close interplay between proliferative and differentiation signals. BMC Biochem. 2002 Jun 10;3(1):14. [PubMed]
  8. Lobenhofer EK, Bennett L, Cable PL, Li L, Bushel PR, Afshari CA. Regulation of DNA Replication Fork Genes by 17beta-Estradiol. Mol Endocrinol. 2002 Jun 1;16(6):1215-1229. [PubMed]
  9. Deliliers GL, Servida F, Fracchiolla NS, Ricci C, Borsotti C, Colombo G, Soligo D. Effect of inositol hexaphosphate (IP6) on human normal and leukaemic haematopoietic cells. Br J Haematol. 2002 Jun;117(3):577-87. [PubMed]
  10. Larramendy ML, Niini T, Elonen E, Nagy B, Ollila J, Vihinen M, Knuutila S. Overexpression of translocation-associated fusion genes of FGFRI, MYC, NPMI, and DEK, but absence of the translocations in acute myeloid leukemia. A microarray analysis. Haematologica. 2002 Jun;87(6):569-77. [PubMed]
  11. Tsukahara T, Tsujino S, Arahata K. CDNA microarray analysis of gene expression in fibroblasts of patients with x-linked Emery-Dreifuss muscular dystrophy. Muscle Nerve. 2002 Jun;25(6):898-901. [PubMed]
  12. Cho-Chung YS, Nesterova M, Becker KG, Srivastava R, Park YG, Lee YN, Cho YS, Kim MK, Neary C, Cheadle C. Dissecting the circuitry of protein kinase a and cAMP signaling in cancer genesis: antisense, microarray, gene overexpression, and transcription factor decoy. Ann N Y Acad Sci. 2002 Jun;968:22-36. [PubMed]
  13. Shaw G, Morse S, Ararat M, Graham FL. Preferential transformation of human neuronal cells by human adenoviruses and the origin of HEK 293 cells. FASEB J 2002 Jun;16(8):869-71 [PubMed]
  14. Welcsh PL, Lee MK, Gonzalez-Hernandez RM, Black DJ, Mahadevappa M, Swisher EM, Warrington JA, King MC. BRCA1 transcriptionally regulates genes involved in breast tumorigenesis. Proc Natl Acad Sci U S A. 2002 May 28;99(11):7560-5. [PubMed][pdf]
  15. Tabuchi Y, Arai Y, Kondo T, Takeguchi N, Asano S. Identification of genes responsive to sodium butyrate in colonic epithelial cells. Biochem Biophys Res Commun. 2002 May 17;293(4):1287-94. [PubMed]
  16. Han H, Bearss DJ, Browne LW, Calaluce R, Nagle RB, Von Hoff DD. Identification of differentially expressed genes in pancreatic cancer cells using cDNA microarray. Cancer Res. 2002 May 15;62(10):2890-6. [PubMed]
  17. Dunican DS, McWilliam P, Tighe O, Parle-McDermott A, Croke DT. Gene expression differences between the microsatellite instability (MIN) and chromosomal instability (CIN) phenotypes in colorectal cancer revealed by high-density cDNA array hybridization. Oncogene. 2002 May 9;21(20):3253-7. [PubMed]
  18. Narita N, Noda I, Ohtsubo T, Fujieda S, Tokuriki M, Saito T, Saito H. Analysis of heat-shock related gene expression in head-and-neck cancer using cDNA arrays. Int J Radiat Oncol Biol Phys. 2002 May 1;53(1):190-6. [PubMed]
  19. Dressler D, Sarang Z, Szondy Z, Engelhart K, Grafstrom RC. Expression of retinoid-related genes in serum-free cultures of normal, immortalized and malignant human oral keratinocytes. Int J Oncol. 2002 May;20(5):897-903. [PubMed]
  20. Spender LC, Cornish GH, Sullivan A, Farrell PJ. Expression of Transcription Factor AML-2 (RUNX3, CBFalpha-3) Is Induced by Epstein-Barr Virus EBNA-2 and Correlates with the B-Cell Activation Phenotype.  J Virol. 2002 May;76(10):4919-27. [PubMed]
  21. Bolt G, Berg K, Blixenkrone-Moller M. Measles virus-induced modulation of host-cell gene expression. J Gen Virol. 2002 May;83(Pt 5):1157-1165. [PubMed]
  22. Lee JS, Thorgeirsson SS. Functional and genomic implications of global gene expression profiles in cell lines from human hepatocellular cancer. Hepatology. 2002 May;35(5):1134-43. [PubMed]
  23. Shimada H, Ichikawa H, Ohki M. Potential involvement of the AML1-MTG8 fusion protein in the granulocytic maturation characteristic of the t(8;21) acute myelogenous leukemia revealed by microarray analysis. Leukemia. 2002 May;16(5):874-85. [PubMed]
  24. Porkka K, Saramaki O, Tanner M, Visakorpi T. Amplification and overexpression of elongin C gene discovered in prostate cancer by cDNA microarrays. Lab Invest. 2002 May;82(5):629-38. [PubMed]
  25. Yih LH, Peck K, Lee TC. Changes in gene expression profiles of human fibroblasts in response to sodium arsenite treatment. Carcinogenesis. 2002 May;23(5):867-876. [PubMed]
  26. Bosio A, Knorr C, Janssen U, Gebel S, Haussmann HJ, Muller T. Kinetics of gene expression profiling in Swiss 3T3 cells exposed to aqueous extracts of cigarette smoke. Carcinogenesis. 2002 May;23(5):741-8. [PubMed]
  27. Lee JS, Thorgeirsson SS. Functional and genomic implications of global gene expression profiles in cell lines from human hepatocellular cancer. Hepatology. 2002 May;35(5):1134-43. [PubMed]
  28. Li K, Prow T, Lemon SM, Beard MR. Cellular response to conditional expression of hepatitis C virus core protein in Huh7 cultured human hepatoma cells. Hepatology. 2002 May;35(5):1237-46. [PubMed]
  29. Schwarze SR, DePrimo SE, Grabert LM, Fu VX, Brooks JD, Jarrard DF. Novel pathways associated with bypassing cellular senescence in human prostate epithelial cells.  J Biol Chem 2002 Apr 26;277(17):14877-83 [PubMed]
  30. Freemantle SJ, Kerley JS, Olsen SL, Gross RH, Spinella MJ. Developmentally-related candidate retinoic acid target genes regulated early during neuronal differentiation of human embryonal carcinoma. Oncogene. 2002 Apr 25;21(18):2880-9. [PubMed]
  31. Zhao Q, Kho A, Kenney AM, Yuk Di DI, Kohane I, Rowitch DH. Identification of genes expressed with temporal-spatial restriction to developing cerebellar neuron precursors by a functional genomic approach. Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5704-9. [PubMed][pdf][web supplement]
  32. Takahashi F, Akutagawa S, Fukumoto H, Tsukiyama S, Ohe Y, Takahashi K, Fukuchi Y, Saijo N, Nishio K. Osteopontin induces angiogenesis of murine neuroblastoma cells in mice. Int J Cancer. 2002 Apr 10;98(5):707-12. [PubMed]
  33. Hernandez MR, Agapova OA, Yang P, Salvador-Silva M, Ricard CS, Aoi S. Differential gene expression in astrocytes from human normal and glaucomatous optic nerve head analyzed by cDNA microarray. Glia. 2002 Apr 1;38(1):45-64. [PubMed]
  34. Ohki R, Yamamoto K, Mano H, Lee RT, Ikeda U, Shimada K. Identification of mechanically induced genes in human monocytic cells by DNA microarrays. J Hypertens. 2002 Apr;20(4):685-691. [PubMed]
  35. Radaeva S, Jaruga B, Hong F, Kim WH, Fan S, Cai H, Strom S, Liu Y, El-Assal O, Gao B. Interferon-alpha activates multiple STAT signals and down-regulates c-Met in primary human hepatocytes. Gastroenterology. 2002 Apr;122(4):1020-1034. [PubMed]
  36. Islam TC, Lindvall J, Wennborg A, Branden LJ, Rabbani H, Smith CI. Expression profiling in transformed human B cells: influence of Btk mutations and comparison to B cell lymphomas using filter and oligonucleotide arrays. Eur J Immunol. 2002 Apr;32(4):982-93. [PubMed]
  37. Kallmann BA, Wagner S, Hummel V, Buttmann M, Bayas A, Tonn JC, Rieckmann P. Characteristic gene expression profile of primary human cerebral endothelial cells. FASEB J. 2002 Apr;16(6):589-91. [PubMed]
  38. Patel CA, Mukhtar M, Harley S, Kulkosky J, Pomerantz RJ. Lentiviral expression of HIV-1 Vpr induces apoptosis in human neurons. J Neurovirol. 2002 Apr;8(2):86-99. [PubMed]
  39. Zhu Y, Lee HC, Zhang L. An examination of heme action in gene expression: heme and heme deficiency affect the expression of diverse genes in erythroid k562 and neuronal PC12 cells. DNA Cell Biol. 2002 Apr;21(4):333-46. [PubMed]
  40. Wong JC, Lee SB, Bell MD, Reynolds PA, Fiore E, Stamenkovic I, Truong V, Oliner JD, Gerald WL, Haber DA. Induction of the interleukin-2/15 receptor beta-chain by the EWS-WT1 translocation product. Oncogene. 2002 Mar 27;21(13):2009-19. [PubMed]
  41. Kitareewan S, Pitha-Rowe I, Sekula D, Lowrey CH, Nemeth MJ, Golub TR, Freemantle SJ, Dmitrovsky E. UBE1L is a retinoid target that triggers PML/RARalpha degradation and apoptosis in acute promyelocytic leukemia. Proc Natl Acad Sci U S A 2002 Mar 19;99(6):3806-11[PubMed]
  42. Canny G, Levy O, Furuta GT, Narravula-Alipati S, Sisson RB, Serhan CN, Colgan SP. Lipid mediator-induced expression of bactericidal/ permeability-increasing protein (BPI) in human mucosal epithelia. Proc Natl Acad Sci U S A 2002 Mar 19;99(6):3902-3907[PubMed][pdf]
  43. Tang P, Cheng TP, Agnello D, Wu CY, Hissong BD, Watford WT, Ahn HJ, Galon J, Moss J, Vaughan M, O'Shea JJ, Gadina M.  Cybr, a cytokine-inducible protein that binds cytohesin-1 and regulates its activity. Proc Natl Acad Sci U S A 2002 Mar 5;99(5):2625-9 [PubMed][pdf]
  44. Sesto A, Navarro M, Burslem F, Jorcano JL. Analysis of the ultraviolet B response in primary human keratinocytes using oligonucleotide microarrays. Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2965-70. [PubMed][pdf][web supplement]
  45. Li H, Lewis A, Brodsky S, Rieger R, Iden C, Goligorsky MS. Homocysteine induces 3-hydroxy-3-methylglutaryl coenzyme a reductase in vascular endothelial cells: a mechanism for development of atherosclerosis? Circulation. 2002 Mar 5;105(9):1037-43. [PubMed]
  46. Suzuki S, Kobayashi M, Chiba K, Horiuchi I, Wang J, Kondoh T, Hashino S, Tanaka J, Hosokawa M, Asaka M. Autocrine production of epithelial cell-derived neutrophil attractant-78 induced by granulocyte colony-stimulating factor in neutrophils.  Blood. 2002 Mar 1;99(5):1863-5. [PubMed]
  47. Iiizumi M, Arakawa H, Mori T, Ando A, Nakamura Y. Isolation of a Novel Gene, CABC1, Encoding a Mitochondrial Protein That Is Highly Homologous to Yeast Activity of bc1 Complex. Cancer Res. 2002 Mar 1;62(5):1246-50. [PubMed]
  48. Euer N, Schwirzke M, Evtimova V, Burtscher H, Jarsch M, Tarin D, Weidle UH. Identification of genes associated with metastasis of mammary carcinoma in metastatic versus non-metastatic cell lines. Anticancer Res. 2002 Mar-Apr;22(2A):733-40. [PubMed]
  49. Quarmby S, West C, Magee B, Stewart A, Hunter? R, Kumar? S. Differential Expression of Cytokine Genes in Fibroblasts Derived from Skin Biopsies of Patients who Developed Minimal or Severe Normal Tissue Damage after Radiotherapy. Radiat Res. 2002 Mar;157(3):243-248. [PubMed]
  50. Chauhan D, Auclair D, Robinson EK, Hideshima T, Li G, Podar K, Gupta D, Richardson P, Schlossman RL, Krett N, ChenLB, Munshi NC, Anderson KC. Identification of genes regulated by dexamethasone in multiple myeloma cells using oligonucleotide arrays. Oncogene. 2002 Feb 21;21(9):1346-58. [PubMed]
  51. Shohet JM, Hicks MJ, Plon SE, Burlingame SM, Stuart S, Chen SY, Brenner MK, Nuchtern JG. Minichromosome Maintenance Protein MCM7 Is a Direct Target of the MYCN Transcription Factor in Neuroblastoma. Cancer Res. 2002 Feb 15;62(4):1123-1128. [PubMed]
  52. Chen X, Shen B, Xia L, Khaletzkiy A, Chu D, Wong JY, Li JJ. Activation of Nuclear Factor kappaB in Radioresistance of TP53-inactive Human Keratinocytes. Cancer Res. 2002 Feb 15;62(4):1213-1221. [PubMed]
  53. Kuwabara I, Kuwabara Y, Yang RY, Schuler M, Green DR, Zuraw BL, Hsu DK, Liu FT. Galectin-7 (PIG1:p53-induced gene 1) exhibits pro-apoptotic function through JNK activation and mitochondrial cytochrome c release.  J Biol Chem 2002 Feb 1;277(5):3487-97[PubMed]
  54. Dong Y, Ganther HE, Stewart C, Ip C. Identification of molecular targets associated with selenium-induced growth inhibition in human breast cells using cDNA microarrays. Cancer Res. 2002 Feb 1;62(3):708-14. [PubMed]
  55. Stokes DG, Liu G, Coimbra IB, Piera?Velazquez S, Crowl RM, Jimenez SA. Assessment of the gene expression profile of differentiated and dedifferentiated human fetal chondrocytes by microarray analysis. Arthritis Rheum. 2002 Feb;46(2):404-419. [PubMed]
  56. Medhora M, Bousamra M 2nd, Zhu D, Somberg L, Jacobs ER. Upregulation of collagens detected by gene array in a model of flow-induced pulmonary vascular remodeling. Am J Physiol Heart Circ Physiol. 2002 Feb;282(2):H414-22. [PubMed]
  57. Viguerie N, Millet L, Avizou S, Vidal H, Larrouy D, Langin D. Regulation of human adipocyte gene expression by thyroid hormone. J Clin Endocrinol Metab. 2002 Feb;87(2):630-4. [PubMed]
  58. Takao J, Ariizumi K, Dougherty II, Cruz PD. Genomic scale analysis of the human keratinocyte response to broad-band ultraviolet-B irradiation. Photodermatol Photoimmunol Photomed. 2002 Feb;18(1):5-13. [PubMed]
  59. Takahashi Y, Nagata T, Ishii Y, Ikarashi M, Ishikawa K, Asai S. Up-regulation of vitamin D3 up-regulated protein 1 gene in response to 5-fluorouracil in colon carcinoma SW620. Oncol Rep. 2002 Jan-Feb;9(1):75-79. [PubMed]
  60. Shaheduzzaman S, Krishnan V, Petrovic A, Bittner M, Meltzer P, Trent J, Venkatesan S, Zeichner S. Effects of HIV-1 Nef on Cellular Gene Expression Profiles. J Biomed Sci. 2002 Jan-Feb;9(1):82-96. [PubMed]
  61. Ochi K, Mori T, Toyama Y, Nakamura Y, Arakawa H. Identification of semaphorin3B as a direct target of p53. Neoplasia. 2002 Jan-Feb;4(1):82-7. [PubMed]
  62. Dokmanovic M, Chang BD, Fang J, Roninson IB. Retinoid-induced growth arrest of breast carcinoma cells involves co-activation of multiple growth-inhibitory genes. Cancer Biol Ther. 2002 Jan-Feb;1(1):24-7; discussion 28-30. [PubMed]
  63. Miyazaki YJ, Hamada J, Tada M, Furuuchi K, Takahashi Y, Kondo S, Katoh H, Moriuchi T. HOXD3 enhances motility and invasiveness through the TGF-beta-dependent and -independent pathways in A549 cells. Oncogene. 2002 Jan 24;21(5):798-808. [PubMed]
  64. Boldrick JC, Alizadeh AA, Diehn M, Dudoit S, Liu CL, Belcher CE, Botstein D, Staudt LM, Brown PO, Relman DA.  Stereotyped and specific gene expression programs in human innate immune responses to bacteria.  Proc Natl Acad Sci U S A. 2002 Jan 22; 99(2): 972-977. [PubMed][pdf][web supplement]
  65. Jena N, Deng M, Sicinska E, Sicinski P, Daley GQ. Critical role for cyclin D2 in BCR/ABL-induced proliferation of hematopoietic cells. Cancer Res. 2002 Jan 15;62(2):535-41. [PubMed]
  66. Tabuchi Y, Kondo T, Ogawa R, Mori H. DNA microarray analyses of genes elicited by ultrasound in human U937 cells. Biochem Biophys Res Commun. 2002 Jan 11;290(1):498-503. [PubMed]
  67. Chang BD, Swift ME, Shen M, Fang J, Broude EV, Roninson IB. Molecular determinants of terminal growth arrest induced in tumor cells by a chemotherapeutic agent. Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):389-94. [PubMed][pdf]
  68. Gurova KV, Roklin OW, Krivokrysenko VI, Chumakov PM, Cohen MB, Feinstein E, Gudkov AV.  Expression of prostate specific antigen (PSA) is negatively regulated by p53. Oncogene. 2002 Jan 3;21(1):153-7. [PubMed]
  69. Tanaka F, Hori N, Sato K. Identification of differentially expressed genes in rat hepatoma cell lines using subtraction and microarray.  J Biochem (Tokyo). 2002 Jan 1;131(1):39-44. [PubMed]
  70. Dvorakova K, Payne CM, Tome ME, Briehl MM, Vasquez MA, Waltmire CN, Coon A, Dorr RT.  Molecular and cellular characterization of imexon-resistant RPMI8226/I myeloma cells. Mol Cancer Ther. 2002 Jan;1(3):185-95. [PubMed]
  71. Manderson EN, Mes-Masson AM, Novak J, Lee PD, Provencher D, Hudson TJ, Tonin PN. Expression Profiles of 290 ESTs Mapped to Chromosome 3 in Human Epithelial Ovarian Cancer Cell Lines Using DNA Expression Oligonucleotide Microarrays. Genome Res. 2002 Jan;12(1):112-21. [PubMed]
  72. Lee SY, Madan A, Furuta GT, Colgan SP, Sibley E. Lactase Gene Transcription Is Activated in Response to Hypoxia in Intestinal Epithelial Cells. Mol Genet Metab. 2002 Jan;75(1):65-69. [PubMed]
  73. Patrone L, Damore MA, Lee MB, Malone CS, Wall R. Genes expressed during the IFN gamma-induced maturation of pre-B cells. Mol Immunol. 2002 Jan;38(8):597-606. [PubMed]
  74. Brooks AR, Lelkes PI, Rubanyi GM. Gene expression profiling of human aortic endothelial cells exposed to disturbed flow and steady laminar flow. Physiol Genomics. 2002;9(1):27-41. [PubMed]
  75. Li H, Goligorsky MS. Endothelial gene responses to homocysteine: relation to atherosclerosis. Exp Nephrol. 2002;10(2):164-9. [PubMed]
  76. Seftor EA, Meltzer PS, Kirschmann DA, Pe'er J, Maniotis AJ, Trent JM, Folberg R, Hendrix MJ. Molecular determinants of human uveal melanoma invasion and metastasis. Clin Exp Metastasis. 2002;19(3):233-46. [PubMed]
  77. Sers C, Tchernitsa OI, Zuber J, Diatchenko L, Zhumabayeva B, Desai S, Htun S, Hyder K, Wiechen K, Agoulnik A, Scharff KM, Siebert PD, Schafer R. Gene expression profiling in RAS oncogene-transformed cell lines and in solid tumors using subtractive suppression hybridization and cDNA arrays. Adv Enz Regul. 2002; 42: 63-82. [PubMed]
  78. Nishizuka I, Ishikawa T, Hamaguchi Y, Kamiyama M, Ichikawa Y, Kadota K, Miki R, Tomaru Y, Mizuno Y, Tominaga N, Yano R, Goto H, Nitanda H, Togo S, Yasushi Y, Hayashizaki Y, Shimada H. Analysis of gene expression involved in brain metastasis from breast cancer using cDNA microarray. Breast Cancer. 2002;9(1):26-32. [PubMed]
  79. Nomura H, Nishimori H, Yasoshima T, Hata F, Tanaka H, Nakajima F, Honma T, Araya J, Kamiguchi K, Isomura H, Sato N, Denno R, Hirata K. A new liver metastatic and peritoneal dissemination model established from the same human pancreatic cancer cell line: analysis using cDNA macroarray. Clin Exp Metastasis. 2002;19(5):391-9. [PubMed]
  80. Kunz M, Koczan D, Ibrahim SM, Gillitzer R, Gross G, Thiesen HJ. Differential expression of thrombospondin 2 in primary and metastatic malignant melanoma. Acta Derm Venereol. 2002;82(3):163-9. [PubMed]
  81. Okubo Y, Hamada J, Takahashi Y, Tada M, Tsutsumida A, Furuuchi K, Aoyama T, Sugihara T, Moriuchi T. Transduction of HOXD3-antisense into human melanoma cells results in decreased invasive and motile activities. Clin Exp Metastasis. 2002;19(6):503-11. [PubMed]
  82. Zimmer R, Thomas P. Expression profiling and interferon-beta regulation of liver metastases in colorectal cancer cells. Clin Exp Metastasis. 2002;19(6):541-50. [PubMed]
  83. Omoto Y, Hayashi S. A study of estrogen signaling using DNA microarray in human breast cancer. Breast Cancer. 2002;9(4):308-11. [PubMed]

Basic science studies

  1. Burton GR, Guan Y, Nagarajan R, McGehee RE. Microarray analysis of gene expression during early adipocyte differentiation. Gene. 2002 Jun 26;293(1-2):21-31. [PubMed]
  2. Hodge DL, Schill WB, Wang JM, Blanca I, Reynolds DA, Ortaldo JR, Young HA. IL-2 and IL-12 Alter NK Cell Responsiveness to IFN-gamma-Inducible Protein 10 by Down-Regulating CXCR3 Expression. J Immunol. 2002 Jun 15;168(12):6090-6098. [PubMed]
  3. Nakamoto T, Suzuki T, Huang J, Matsumura T, Seo S, Honda H, Sakai R, Hirai H. Analysis of gene expression profile in p130(Cas)-deficient fibroblasts. Biochem Biophys Res Commun. 2002 Jun 14;294(3):635-41. [PubMed]
  4. Li J, Johnson JA. Time-dependent changes in ARE-driven gene expression by use of a noise-filtering process for microarray data. Physiol Genomics. 2002 Jun 3;9(3):137-144. [PubMed]
  5. Grandvaux N, Servant MJ, TenOever B, Sen GC, Balachandran S, Barber GN, Lin R, Hiscott J. Transcriptional Profiling of Interferon Regulatory Factor 3 Target Genes: Direct Involvement in the Regulation of Interferon-Stimulated Genes. J Virol. 2002 Jun 1;76(11):5532-5539. [PubMed]
  6. Yuen T, Wurmbach E, Ebersole BJ, Ruf F, Pfeffer RL, Sealfon SC. Coupling of GnRH Concentration and the GnRH Receptor-Activated Gene Program. Mol Endocrinol. 2002 Jun 1;16(6):1145-1153. [PubMed]
  7. Cooper S. Cell cycle analysis and microarrays. Trends Genet. 2002 Jun;18(6):289-90. [PubMed]
  8. Mong JA, Krebs C, Pfaff DW. Perspective: micoarrays and differential display PCR-tools for studying transcript levels of genes in neuroendocrine systems. Endocrinology. 2002 Jun;143(6):2002-6. [PubMed]
  9. Gerhold DL, Liu F, Jiang G, Li Z, Xu J, Lu M, Sachs JR, Bagchi A, Fridman A, Holder DJ, Doebber TW, Berger J, Elbrecht A, Moller DE, Zhang BB. Gene expression profile of adipocyte differentiation and its regulation by peroxisome proliferator-activated receptor-gamma agonists. Endocrinology. 2002 Jun;143(6):2106-18. [PubMed]
  10. Cotman CW, Berchtold NC. Exercise: a behavioral intervention to enhance brain health and plasticity. Trends Neurosci. 2002 Jun;25(6):295-301. [PubMed]
  11. Libutti SK, Costouros NG. Microarray technology and gene expression analysis for the study of angiogenesis. Expert Opin Biol Ther. 2002 Jun;2(5):545-56. [PubMed]
  12. Arias M, Lahme B, Van De Leur E, Gressner AM, Weiskirchen R. Adenoviral Delivery of an Antisense RNA Complementary to the 3' Coding Sequence of Transforming Growth Factor-beta1 Inhibits Fibrogenic Activities of Hepatic Stellate Cells. Cell Growth Differ. 2002 Jun;13(6):265-73. [PubMed]
  13. Zhou J, Thompson DK. Challenges in applying microarrays to environmental studies. Curr Opin Biotechnol. 2002 Jun;13(3):204-7. [PubMed]
  14. Kondo M, Shibata T, Kumagai T, Osawa T, Shibata N, Kobayashi M, Sasaki S, Iwata M, Noguchi N, Uchida K. 15-Deoxy-Delta(12,14)-prostaglandin J(2): The endogenous electrophile that induces neuronal apoptosis. Proc Natl Acad Sci U S A. 2002 May 28;99(11):7367-72. [PubMed][pdf]
  15. Yoshida NL, Miyashita T, U M, Yamada M, Reed JC, Sugita Y, Oshida T. Analysis of gene expression patterns during glucocorticoid-induced apoptosis using oligonucleotide arrays. Biochem Biophys Res Commun. 2002 May 17;293(4):1254-61. [PubMed]
  16. Huang Y, Tan M, Gosink M, Wang KK, Sun Y. Histone Deacetylase 5 Is Not a p53 Target Gene, But Its Overexpression Inhibits Tumor Cell Growth and Induces Apoptosis. Cancer Res. 2002 May 15;62(10):2913-22. [PubMed]
  17. Dalby MJ, Yarwood SJ, Riehle MO, Johnstone HJ, Affrossman S, Curtis AS. Increasing Fibroblast Response to Materials Using Nanotopography: Morphological and Genetic Measurements of Cell Response to 13-nm-High Polymer Demixed Islands. Exp Cell Res. 2002 May 15;276(1):1-9. [PubMed]
  18. Mori T, Anazawa Y, Matsui K, Fukuda S, Nakamura Y, Arakawa H. Cyclin K as a Direct Transcriptional Target of the p53 Tumor Suppressor. Neoplasia. 2002 May-Jun;4(3):268-74. [PubMed]
  19. Jayanthi S, McCoy MT, Ladenheim B, Cadet JL. Methamphetamine causes coordinate regulation of SRC, cas, crk, and the jun N-terminal kinase-jun pathway. Mol Pharmacol. 2002 May;61(5):1124-31. [PubMed]
  20. Li Y, Lazar MA. Differential Gene Regulation by PPARgamma Agonist and Constitutively Active PPARgamma2. Mol Endocrinol. 2002 May;16(5):1040-8. [PubMed]
  21. Rozenfeld-Granot G, Toren A, Amariglio N, Nagler A, Rosenthal E, Biniaminov M, Brok-Simoni F, Rechavi G. MAP kinase activation by mu opioid receptor in cord blood CD34(+)CD38(-) cells. Exp Hematol. 2002 May;30(5):473-80. [PubMed]
  22. Menssen A, Hermeking H. Characterization of the c-MYC-regulated transcriptome by SAGE: Identification and analysis of c-MYC target genes. Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6274-9. [PubMed][pdf]
  23. Stanelle J, Stiewe T, Theseling CC, Peter M, Putzer BM. Gene expression changes in response to E2F1 activation. Nucleic Acids Res. 2002 Apr 15;30(8):1859-67. [