Proteomics

General Hardware    Two dimension gel electrophoresis/ Mass Spectrometry (2D gel/MS)    Structural genomics Software Database Institute Lab/ people Eduction Conference Literature Books Company Glossaries

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General

• Bio-IT World Resource Centers
• Proteomics Gears Up - A good historical article published in SIGNALS magazine
• ProteomicsSURF - A Pointer to Proteomics Research Resources including Proteomics, Bioinformatics, Microarrays, PCR, Crystallography, NMR, Chromatography, Electrophoresis.

Hardware

Two dimensional gel electrophoresis/ Mass Spectrometry (2D gel/MS)

• The ProteomeWorks System - A complete solution provides by BioRad and Micromass.

Structural genomics

• Structural Proteomics Lab. (Prof. Se Won Suh) - Prof. Se Won Suh's lab website contains a lot of resources related to structural genomics.

Software

• dbsieve - extraction and formatting of proteomic information from NCBI and MendelBase™ databases.
• ExPASy Proteomics tools - Tons of softwares for proteomics analysis in ExPASy (Expert Protein Analysis System) server, maintained by Swiss Institute of Bioinformatics (SIB).
• Model@home - is a distributed computing environment that follows the spirit of the famous Seti@Home project, but is not tied to a specific application; mainly used for large scale molecular modeling
• Structural Biology Software Database - software database maintained by University of Illinois

Database

Language & Standard

Institute

Lab/ people

Education

• Boston University Biology Proteomics Resource Page
• Mathematical Sciences Research Institute (MSRI) - provides a number of online video seminars on mathematical analysis on genomics, microarray, bioinformatics, proteomics, linkage analysis and genome mapping
• MSRI/PMMB Short Course: Mathematical and Computational Challenges in Molecular and  Cell Biology, June 12-23, 2000
• Protein Structure Prediction - by Ram Samudrala [video]
• Prediction and design of protein structures and folding mechanisms - by David Baker [video]
• Mathematics and Computational Biology of Genome Analysis, June 12-23, 2000
• Identification of modified proteins by tandem mass-spectrometry - by Pavel A. Pevzner [video]
• An integrated view of bioinformatics for both genomics and proteomics - by William S. Hancock [video]
• Mathematics in Imaging Workshop, November 1-5, 1999
• The Phase Problem Of X-Ray Crystallography - by Herbert A. Hauptman [video]

Conference

• Third Annual PepTalk. January 12-15, 2004. San Diego, California; organized by Cambridge Healthtech Institute.

Literature

Books

Company

• BioRad - famous for its apparatus for protein science. It forms an alliance with micromass recently to conquer the proteomics market by 2D gel/MS.
• Hybrigenics - functional proteomics company dedicated to the identification of novel  biological targets involved in key cellular functions, using protein-protein interactions  to discover lead compounds which are the precursors of future medicines.
• PROTANA - provides functional proteomics tools, services and research to accelerate the drug development process
• MDS proteomics - aimed at  improving the productivity of the pharmaceutical industry in discovering and developing new medicines for the treatment of disease through its proprietary proteomics systems
• Micromass - a company dedicated to MS for health and life science sector.
• Myriad Genetics - a biopharmaceutical company focused on the development of therapeutic and diagnostic products using genomic and proteomic technologies.
• Structural GenomiX - performing X-ray crystallography on an industrial scale to speed up the lead discovery process.

Glossaries

• Genomics Glossary - A comprehensive genomic glossary draft covering many aspects, maintained by Mary Chitty of Cambridge Healthtech Institute